mRNA_H-paniculata_contig45558.11430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45558.11430.1
Unique NamemRNA_H-paniculata_contig45558.11430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 206 bits (524), Expect = 2.020e-56
Identity = 132/327 (40.37%), Postives = 185/327 (56.57%), Query Frame = 1
Query:    7 PKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDPGRVPAGRKAIR--------------------------FSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQDIP--FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-RENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISA--PESADKPSEPKSGNST-EYRGMVGSLMYASTGTRP 891
            P++  EAL GP+++ WR A++ E  +  +N + E      +P G K I                           F+Q EG D+ E  APVA + ++R + +LAA+HD EL+ MDV  AYLN ++ E+L++ LPP+      DIP     +L+KSLYGLKQ+GR WN T D  L  +G  R   ++CLY  R EGG+   LV VYVDDL++A   R  +DE K  ++  F+M+DLG  S VLGI++R D     I +SQ  YI  VLKRCG  +C+ V TP+  + +++A  P + D  +E    N T  Y  +VGSLMYA  GTRP
Sbjct: 1003 PRTIKEALNGPDSKHWREALDDELNSFEENDVKEVVP---IPEGVKPITSKIVPKIKFDANGNIERYKIRIVARGFTQREGVDYQEVFAPVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRP 1320          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A2G2W4T7_CAPBA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W4T7_CAPBA)

HSP 1 Score: 198 bits (503), Expect = 1.290e-53
Identity = 119/325 (36.62%), Postives = 177/325 (54.46%), Query Frame = 1
Query:    1 GEPKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDPGRVPAGRKAIR---------------------------FSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREN-VDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            GEPK+ +EA+ G ++ KW AAM++E  +L+KN  W   D   +P G++ I                            F Q EG DF E  +PV R S++R + +L A +D ELE +DV  A+L+  +EEE++++ P  F    ++   V RL+KSLYGLKQS R W    D F+ G G  RS  D+C+YF +   G    L+ +YVDD++IA R +  VD+ K  ++  F MKDLG   ++LG+E+  D   G + +SQ  Y+ ++L R G  +C+ V TP+    K+S+ +      E +  +   Y   VGSLMYA   TRP
Sbjct:  469 GEPKNYSEAISGDDSAKWTAAMQEEVESLLKNETW---DLVMLPEGKRVISCKWIFKRKEGIPGVENARYKARFVVRGFDQQEGIDFNEVFSPVVRHSSIRVLLALVALYDLELEQLDVKTAFLHGNLEEEIYIQQPEGFVVPGKEN-HVCRLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSLVYLL-LYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNTPLAAHFKLSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRP 788          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 194 bits (493), Expect = 2.730e-52
Identity = 119/324 (36.73%), Postives = 182/324 (56.17%), Query Frame = 1
Query:    7 PKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDPGRVPAGRKAI-----------------RFS---------QVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQDIPF-VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREN-VDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVE-GKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            P++  EAL+G  A+ W+ +M  E+ AL+ N  W   D   +PAG K I                 RF          Q  G +++ET +PV R  T+R +F++AAE    +  +D+  AYLN+ ++EE++++ P  F   S + P  V +L+K++YGLKQSGR WNNTLD+ L  +G +RS  ++CLY  + + G +   +AVYVDDL+I    EN +   K  +S +F M D GSLS  LG+E++ D   G +++ Q +YIR +LK  G   CR V TP++ G +     +S  K       N T+Y+ ++GSLMY +  +RP
Sbjct:  818 PQTVTEALQGEYAQNWQESMRSEYNALLSNDTWSLVD---LPAGAKTIGSKWVFRIKRDKNGEIERFKSRLVAKGCGQQFGVNYWETFSPVIRYETIRMLFAIAAEKQLFMHQIDISNAYLNSSLDEEVYMRQPQNF--ISTEHPNKVLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKV------NVTQYQSLIGSLMYLAILSRP 1128          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 194 bits (493), Expect = 2.790e-52
Identity = 114/319 (35.74%), Postives = 182/319 (57.05%), Query Frame = 1
Query:    4 EPKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDP--------------------GRVPAGRKAI---RFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            EP+S  EA++ P+  +W+ A+EKE   L  +  ++  +P                    G++ + +  +    FSQ+ G DF +T APVA+++++R + +LAA HD+++  MDV  AYLNA +EEE+F+K PP  +   ++  +V  LR ++YGLKQSGR W   +   L  +GL RS+ D C+++  ++     L++A+ VDD  IAG    V  FK  +S+RF M DLG +  +LGIEVR D    T+++SQ +YI  ++ R    + + + TP+E    +S  +    P E +   +  YR  +GSLMYA+ GTRP
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEH-WVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRP 1276          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A0V1GS48_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1GS48_9BILA)

HSP 1 Score: 193 bits (490), Expect = 6.960e-52
Identity = 121/330 (36.67%), Postives = 180/330 (54.55%), Query Frame = 1
Query:    4 EPKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDPGRVPAGRKAIR--------------------------FSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEF------SPFSQDIPF-VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRE-NVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            +PKS  EAL   E+++W  AM++E+ ALVKN  WE  +    P  +K I                           F Q    DF ET APVAR+S++RT+ +++A +   +  +D  +AYLN  +EEE+++++P +       S   Q++   V R+RK+LYGLKQSGR W   LD+ L+  GL+ +  D C+YF R   G    + A+YVDD++IA      ++E K  +S+ F MKD+G +   LGIE++  S NG I +SQ  YI ++L+R G    + V TP++   K+SA       +E     +  YR +VGSLMY S  TRP
Sbjct:  867 DPKSVVEALSCHESKEWLEAMKREYEALVKNNTWEIVNR---PQRQKVITCQWVYNTKVNADGSIKQRKARLVAKGFLQRPNIDFHETYAPVARLSSIRTILAISANYGLTVHQLDFVSAYLNGEIEEEIYMEIPEKLDEVLKCSKMKQNLDGKVCRIRKALYGLKQSGRQWYKKLDEKLLQYGLKATSGDPCVYFERR--GRELTIAAIYVDDVIIASNNTARMNELKKTLSKSFEMKDMGPIHYCLGIEIK-QSANGDIEMSQQKYIMDILERFGMRNSKPVGTPIDASNKLSAETCPKTEAEKAEMQNMPYRSLVGSLMYLSVSTRP 1190          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.160e-51
Identity = 104/250 (41.60%), Postives = 149/250 (59.60%), Query Frame = 1
Query:  154 FSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFS---PFSQDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-RENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            +SQ  G D+  T APVA ++T+R + ++A   D EL+ MDVD AYL + +EE+++VK PP +    P  +++  V RLRKSLYGLKQSGRNW+  +D +  G G   S  D CLY      GE  L++ +YVDDL+IAG  R+ VD+FK  +S+   MKDL  L  +LG+ ++ +     + ISQ +YI  +L +    +C+ V TP+EG +        DKP         EY  +VGSL+YA+  TRP
Sbjct:   46 YSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG-ILTKMNGEGDKPDR-------EYMKLVGSLLYAALVTRP 284          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.760e-51
Identity = 120/305 (39.34%), Postives = 167/305 (54.75%), Query Frame = 1
Query:   55 RAAMEKEWGALVKNGIWE-------------------SEDPGRVPAGRKAI----RFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQDI-PFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-RENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISAPESAD-KPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            + A + E+ A +KNG WE                     D   V   RKA      +SQ  G D+  T APVA M+T+R V +LA   D EL+ MDVD AYL + +EE++++K PP +  +  +    V RLRKSLYGLKQSGRNW+  +D +  G GL  S  D CLY      GE  L++ +YVDDL+I    R   D+FK ++S+ F MKDL  L  +LG+ ++ +  N T+ ISQ  YI  +L + G  +C+ V TP+EG   ++  +  D KP         EY  +VGSL+YA+  TRP
Sbjct:  210 KKAKDAEYQAHMKNGTWELTPLPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGT--LTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRP 504          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 187 bits (475), Expect = 2.990e-51
Identity = 114/325 (35.08%), Postives = 179/325 (55.08%), Query Frame = 1
Query:    1 GEPKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDPGRVPAGRKAIR-------------------------FSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQD-IPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-ENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVK-ISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            G P++  EA++ PEA  W  AM+ E  AL +N  +E      +P G+  +                          ++QV G D+ ET +P A ++++R +  LAA+++  +  MDV  A+L+  ++ E+F++ P  F   S++ +  V RL+KSLYGLKQSGRNWN  LD++L+  G  R+  D C+Y  + + GE  ++V ++VDDL+IA    + + +FK N+  +FRMKDLG +S  LGI  +    NG I ++Q  YI+++L R G  +C+   TP E + + +S  E  D            YR +VGSL+Y  T TRP
Sbjct:  168 GVPQTYTEAMESPEASGWEKAMKGEMEALKENDTFELTS---LPEGKNLVGGSWVYTIKEDANGLETLKARYVAKGYNQVHGIDYEETFSPTANITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFK--QGNGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDP---------RRYREIVGSLIYLMTCTRP 476          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 184 bits (467), Expect = 3.430e-51
Identity = 115/315 (36.51%), Postives = 174/315 (55.24%), Query Frame = 1
Query:   22 EALKGPEAEKWRAAMEKEWGALVKNGIWE-------------------SEDPG---RVPAGRKAIRFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQD-IPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-ENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVK-ISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP 891
            EA++  EA  W  AM+ E  AL +N  +E                    ED      + A   A  +SQV G D+ ET +P A ++++  +  LAA++D  +  MDV  A+L+A ++ E+F++ P  F   S++ +  V RL+KSLYGLKQSGRNWN  LD++L+  G  R+  D C+Y  + + GE  ++V ++VDDL+IA    + + +FK N+  +FRMKDLG +S  LGI  +    NG I ++Q  YI+++L R G  +C+   TP E + + +S  E  D            YR +VGSL+Y  T TRP
Sbjct:  150 EAMESTEASGWEKAMKGEMEALKENDTFELTTLPEGKNLVGGRWVYTIKEDANGLETLKARYVAKGYSQVHGIDYEETFSPTANITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFK--QGNGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDP---------RRYREIVGSLIYLMTCTRP 451          
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Match: A0A4Q2D651_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D651_9AGAR)

HSP 1 Score: 191 bits (484), Expect = 4.470e-51
Identity = 122/324 (37.65%), Postives = 179/324 (55.25%), Query Frame = 1
Query:    7 PKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWE---SEDPGRVPAGRKAIR--------------------FSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNARVEEELFVKLPPEFSPFSQDIP--FVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-RENVDEFKHNVSQRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRGVPTPVEGKVKISAPESADKP---SEPKSGNSTEYRGMVGSLMYASTGTRP 891
            P + A+AL GP+   W+ A+E+E  +L+ N ++E   + D  R    +  +R                    F+Q +G DF +T +PVA + ++R + SL A+ + EL  MDV  AYLN  ++E++++  PPE      DIP     +L++SLYGLKQSGR WN TLD  L+ +GL R   ++CLY  +++G E   LV VYVDDL++A   R  +++ K  +S RF+MKDLG    +LG+ +  D  NG I +SQ +YI  VL+R G   C   PTP+    K +  +  D     S    G    Y+ +VGSLMYA   TRP
Sbjct:  996 PLTLADALLGPDGHHWKRALEEELQSLIDNDVFEVVKTPDGIRPITSKPVLRIKTDSNGNIERYKIRIVARGFTQRKGIDFKDTFSPVANLESIRLILSLTAQFNLELNQMDVTTAYLNGVLDEDIYLS-PPE----GVDIPEGHCWKLKRSLYGLKQSGRTWNKTLDQSLLSMGLVRLDAETCLYVYKEDG-EVCFLV-VYVDDLLLAATSRPFMNKVKAMLSSRFKMKDLGEAKFILGMAIHRDRRNGEIRLSQRNYIANVLERTGMSHCSPAPTPIPTSAKATEDDPVDNTILHSITIEGREVSYKSVVGSLMYAMLATRP 1312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45558.11430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A409WVI7_9AGAR2.020e-5640.37Integrase catalytic domain-containing protein (Fra... [more]
A0A2G2W4T7_CAPBA1.290e-5336.62Retrovirus-related Pol polyprotein from transposon... [more]
W8BWJ0_CERCA2.730e-5236.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GQU1_9APHY2.790e-5235.74Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A0V1GS48_9BILA6.960e-5236.67Retrovirus-related Pol polyprotein from transposon... [more]
W7TII5_9STRA2.160e-5141.60Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA2.760e-5139.34Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT2.990e-5135.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT3.430e-5136.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Q2D651_9AGAR4.470e-5137.65Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45558contigH-paniculata_contig45558:2..1030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score192.2
Seed ortholog evalue3.5e-46
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons3
Model size891
Cds size891
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45558.11430.1prot_H-paniculata_contig45558.11430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45558 2..1030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930364.8711376-CDS-H-paniculata_contig45558:1..711622930364.8711376-CDS-H-paniculata_contig45558:1..71Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45558 2..71 -
1691481259.071359-CDS-H-paniculata_contig45558:1..711691481259.071359-CDS-H-paniculata_contig45558:1..71Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45558 2..71 -
1622930364.8853388-CDS-H-paniculata_contig45558:131..8011622930364.8853388-CDS-H-paniculata_contig45558:131..801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45558 132..801 -
1691481259.0814314-CDS-H-paniculata_contig45558:131..8011691481259.0814314-CDS-H-paniculata_contig45558:131..801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45558 132..801 -
1622930364.8992398-CDS-H-paniculata_contig45558:879..10301622930364.8992398-CDS-H-paniculata_contig45558:879..1030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45558 880..1030 -
1691481259.0899312-CDS-H-paniculata_contig45558:879..10301691481259.0899312-CDS-H-paniculata_contig45558:879..1030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45558 880..1030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45558.11430.1

>prot_H-paniculata_contig45558.11430.1 ID=prot_H-paniculata_contig45558.11430.1|Name=mRNA_H-paniculata_contig45558.11430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
GEPKSAAEALKGPEAEKWRAAMEKEWGALVKNGIWESEDPGRVPAGRKAI
RFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAR
VEEELFVKLPPEFSPFSQDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVG
IGLERSITDSCLYFSRDEGGETNLLVAVYVDDLVIAGRRENVDEFKHNVS
QRFRMKDLGSLSRVLGIEVRCDSPNGTITISQGSYIREVLKRCGFYECRG
VPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTGTRP
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mRNA from alignment at H-paniculata_contig45558:2..1030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45558.11430.1 ID=mRNA_H-paniculata_contig45558.11430.1|Name=mRNA_H-paniculata_contig45558.11430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-paniculata_contig45558:2..1030- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGCCGAAATCCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAA ATGGCGCGCGGCAATGGAGAAAGAATGGGGGGCGTTGGTGAAAAATGGGA TATGGGAAAGCGAAGACCCGGGGAGGGTACCCGCAGGGCGGAAGGCGATT CGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGCCAGCGTGGC ACGCTACAAGGCTCGACTGGTGGCTCAAGGTTTTTCCCAGGTGGAGGGTG AAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGT ACTGTTTTTAGCCTGGCCGCAGAACATGATTTCGAATTAGAAGGCATGGA CGTAGATGCGGCGTATTTGAACGCCCGGGTAGAAGAAGAGCTGTTTGTTA AGCTACCCCCCGAGTTTTCCCCTTTCTCCCAAGACATACCGTTTGTGCGC CGCTTGCGTAAAAGCTTGTACGGCCTCAAACAGAGCGGTCGAAACTGGAA TAACACTCTTGATGATTTTCTTGTTGGGATAGGACTCGAACGTTCCATTA CCGACTCATGCCTGTACTTTTCCCGCGACGAAGGGGGAGAGACAAACCTT CTGGTGGCCGTGTATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAA CGTAGACGAGTTCAAGCATAACGTAAGTCAGCGTTTTAGGATGAAAGACT TGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGATGTGACAGCCCT AATGGTACCATAACCATCTCGCAGGGTAGCTATATCCGCGAGGTACTAAA AAGATGCGGTTTTTACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAA AAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCGAAG TCAATTGCAGCTGTACTGTCGGACATAGGCGCAGGAGTACAAGAAAGCAG CATAGGGAGAAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGATCAC TCATGTACGCCTCGACAGGAACTAGACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig45558:2..1030-

>mRNA_H-paniculata_contig45558.11430.1 ID=mRNA_H-paniculata_contig45558.11430.1|Name=mRNA_H-paniculata_contig45558.11430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig45558:2..1030- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGCCGAAATCCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAA
ATGGCGCGCGGCAATGGAGAAAGAATGGGGGGCGTTGGTGAAAAATGGGA
TATGGGAAAGCGAAGACCCGGGGAGGGTACCCGCAGGGCGGAAGGCGATT
CGGGGAGCCGAAATCCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAA
AATGGCGCGCGGCAATGGAGAAAGAATGGGGGGCGTTGGTGAAAAATGGG
ATATGGGAAAGCGAAGACCCGGGGAGGGTACCCGCAGGGCGGAAGGCGAT
TCGTTTTTCCCAGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCCG
TAGCTCGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCAGAACAT
GATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCG
GGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCT
CCCAAGACATACCGTTTGTGCGCCGCTTGCGTAAAAGCTTGTACGGCCTC
AAACAGAGCGGTCGAAACTGGAATAACACTCTTGATGATTTTCTTGTTGG
GATAGGACTCGAACGTTCCATTACCGACTCATGCCTGTACTTTTCCCGCG
ACGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTG
GTCATTGCTGGTCGTCGTGAGAACGTAGACGAGTTCAAGCATAACGTAAG
TCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAA
TAGAAGTACGATGTGACAGCCCTAATGGTACCATAACCATCTCGCAGGGT
AGCTATATCCGCGAGGTACTAAAAAGATGCGGTTTTTACGAGTGTCGAGG
AGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGG
CCGACAAGCCCTCCGAACCGAAGTTTTTCCCAGGTGGAGGGTGAAGATTT
CTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGTTT
TTAGCCTGGCCGCAGAACATGATTTCGAATTAGAAGGCATGGACGTAGAT
GCGGCGTATTTGAACGCCCGGGTAGAAGAAGAGCTGTTTGTTAAGCTACC
CCCCGAGTTTTCCCCTTTCTCCCAAGACATACCGTTTGTGCGCCGCTTGC
GTAAAAGCTTGTACGGCCTCAAACAGAGCGGTCGAAACTGGAATAACACT
CTTGATGATTTTCTTGTTGGGATAGGACTCGAACGTTCCATTACCGACTC
ATGCCTGTACTTTTCCCGCGACGAAGGGGGAGAGACAAACCTTCTGGTGG
CCGTGTATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAACGTAGAC
GAGTTCAAGCATAACGTAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTC
TCTCTCGCGCGTGTTGGGAATAGAAGTACGATGTGACAGCCCTAATGGTA
CCATAACCATCTCGCAGGGTAGCTATATCCGCGAGGTACTAAAAAGATGC
GGTTTTTACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAA
GATTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCGAAAAGTGGCA
ATTCGACTGAATACAGAGGCATGGTAGGATCACTCATGTACGCCTCGACA
GGAACTAGACCTAAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGAT
CACTCATGTACGCCTCGACAGGAACTAGACCT
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