mRNA_H-paniculata_contig45554.11429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45554.11429.1
Unique NamemRNA_H-paniculata_contig45554.11429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: D8LSW0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW0_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.450e-18
Identity = 58/121 (47.93%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPY--GLGIT----------------------LESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +NPEHLL++AAGNDG ++ D      CTVG+P L KN L VGA+SSG    T T  +G+     LG+T                       E A +DTV FFSS GPT DGRIKPDVVAPG
Sbjct:  661 ENPEHLLIFAAGNDGGYE-DIPNREACTVGSPALGKNSLAVGATSSGPFPGTRTGDDGNLVYEELGLTDYSPEGYPWICLTPFLGTPSASTEPAGVDTVAFFSSQGPTLDGRIKPDVVAPG 780
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: A0A6H5L2G3_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.950e-18
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +N EHLLL++AGN G   + + R   CT+ +PG++KN LTVG++SSG+ RL++TD +G  Y  G  L  +++D V+ FS YG T DGRIKP+VVAPG
Sbjct:  304 ENQEHLLLFSAGNTG---WTTDRD-TCTIDSPGIAKNVLTVGSTSSGVTRLSTTDLDGRGYADGDEL--STIDVVSEFSGYGFTEDGRIKPEVVAPG 394
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: D8LQI1_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.050e-18
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +N EHLLL++AGN G   + + R   CT+ +PG++KN LTVG++SSG+ RL++TD +G  Y  G  L  +++D V+ FS YG T DGRIKP+VVAPG
Sbjct:  615 ENQEHLLLFSAGNTG---WTTDRD-TCTIDSPGIAKNVLTVGSTSSGVTRLSTTDLDGRGYADGDEL--STIDVVSEFSGYGFTEDGRIKPEVVAPG 705
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: A0A6H5KDF8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDF8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.350e-18
Identity = 55/121 (45.45%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPY--GLGIT----------------------LESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +NPEHLL+++AGNDG ++ D      CTVG+P L KN L VGA+SSG    T T  +G+ +   +G+T                       E A +DTV +FSS GPT DGRIKPDVVAPG
Sbjct:  366 ENPEHLLIFSAGNDGGYE-DIPNREACTVGSPALGKNSLAVGATSSGPFPGTRTGDDGNLFYEEVGLTDYSPEGYPWICLMPYLGTPSASTEPAGVDTVAYFSSQGPTLDGRIKPDVVAPG 485
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.290e-17
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +N + LLL+AAGNDG    D   G  CT+GTP L+KN L VGAS+SG  RL+ TD +GDP      ++   +D + +FSS+GPT D RIKP+VVAPG
Sbjct:  740 RNQDQLLLFAAGNDG----DDWSG--CTMGTPALAKNVLAVGASTSGPGRLSFTDEDGDPTDGDSRVQD--IDAMAYFSSFGPTLDNRIKPEVVAPG 828
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 85.1 bits (209), Expect = 3.250e-17
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    4 NPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            NPE+L++ AAGN G    + GR  +CT+ +P + KN L VGA+SSG  R+T T ++GD   +  T   A +DTV  FSSYGPT DGRIKP+VVAPG
Sbjct:  576 NPENLVVVAAGNAG--DTEDGRT-VCTMYSPAIGKNALAVGATSSGETRITKTSADGDL--IDGTNGYADVDTVAQFSSYGPTQDGRIKPEVVAPG 666
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: D8LU20_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU20_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.260e-17
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNG----DPYGL--------------------GITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +NPEHLL++AAGN G  +      G CT+G+P L KN L VGA+SSG  R T T  +G    + +G+                      ++E A +DTV FFSS GPT DGRIKPDVVAPG
Sbjct:  620 ENPEHLLIFAAGNHGGNEDIPNHEG-CTIGSPALGKNILAVGATSSGPSRGTRTGEDGNLVYEEFGMTDYSPEGYPWICLSPSLGTPSASMEPAGVDTVAFFSSQGPTLDGRIKPDVVAPG 739
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: D8LBZ2_ECTSI (Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.330e-17
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +N + LLL+AAGNDG  +  SG    CT+G+P ++KN L VGAS+SG  RL+ TD +GDP      ++   +D + +FSS+GPT DGRIKP+VVAPG
Sbjct:  457 RNQDQLLLFAAGNDG--EEWSG----CTMGSPAVAKNVLAVGASTSGPGRLSFTDEDGDPTDGDSRVQD--IDAMAYFSSFGPTLDGRIKPEVVAPG 545
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BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 81.3 bits (199), Expect = 7.320e-16
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    4 NPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            NPE+L++ AAGN G  + + GR  +CT+ +P + KN L VGA+SSG  R+  T ++GD      T   + +DTV  FSSYGPT DGRIKP+VVAPG
Sbjct:  572 NPENLVVVAAGNAG--EIEDGRT-VCTMYSPAIGKNALAVGATSSGETRVGVTSADGDR--ADGTNGYSDVDTVAVFSSYGPTQDGRIKPEVVAPG 662
[Close]
BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-15
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMRLTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG 291
            +NPE+LL++AAGNDG  +       +CT+ +P + KN L VGAS+SG  R+ ST+              A +D V  FSSYG T+DGRIKP+VVAPG
Sbjct:  626 ENPENLLIFAAGNDGETERS-----VCTMASPAIGKNVLAVGASTSGDTRVISTEGG------------AGIDMVADFSSYGFTTDGRIKPEVVAPG 705
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45554.11429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW0_ECTSI1.450e-1847.93Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L2G3_9PHAE4.950e-1851.55Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LQI1_ECTSI5.050e-1851.55Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KDF8_9PHAE6.350e-1845.45Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A6H5JKA8_9PHAE1.290e-1752.58Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1R2_SACJA3.250e-1753.13Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
D8LU20_ECTSI3.260e-1745.45Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LBZ2_ECTSI4.330e-1751.55Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculos... [more]
A0A2I6U1S5_SACJA7.320e-1651.04Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5K229_9PHAE1.000e-1547.42Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45554contigH-paniculata_contig45554:160..450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LNG5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930364.8229508-CDS-H-paniculata_contig45554:159..4501622930364.8229508-CDS-H-paniculata_contig45554:159..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45554 160..450 -
1691481259.0588973-CDS-H-paniculata_contig45554:159..4501691481259.0588973-CDS-H-paniculata_contig45554:159..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45554 160..450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45554.11429.1prot_H-paniculata_contig45554.11429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45554 160..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45554.11429.1

>prot_H-paniculata_contig45554.11429.1 ID=prot_H-paniculata_contig45554.11429.1|Name=mRNA_H-paniculata_contig45554.11429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
QNPEHLLLYAAGNDGLFKYDSGRGGICTVGTPGLSKNGLTVGASSSGIMR
LTSTDSNGDPYGLGITLESASLDTVTFFSSYGPTSDGRIKPDVVAPG
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mRNA from alignment at H-paniculata_contig45554:160..450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45554.11429.1 ID=mRNA_H-paniculata_contig45554.11429.1|Name=mRNA_H-paniculata_contig45554.11429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig45554:160..450- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACCCAGAGCATCTGCTGCTGTATGCAGCCGGCAACGACGGGCTCTT
CAAATACGACAGCGGTCGCGGTGGCATATGCACCGTGGGCACCCCGGGCT
TATCAAAAAATGGGTTGACCGTCGGAGCGTCCTCGTCTGGCATAATGCGT
CTGACCAGCACGGACTCGAACGGTGACCCATATGGACTGGGCATTACCTT
GGAGTCCGCTTCTCTCGATACTGTCACCTTCTTCAGTTCGTACGGCCCCA
CTTCGGATGGCCGAATTAAGCCGGACGTCGTGGCTCCTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45554:160..450-

>mRNA_H-paniculata_contig45554.11429.1 ID=mRNA_H-paniculata_contig45554.11429.1|Name=mRNA_H-paniculata_contig45554.11429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig45554:160..450- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACCCAGAGCATCTGCTGCTGTATGCAGCCGGCAACGACGGGCTCTT
CAAATACGACAGCGGTCGCGGTGGCATATGCACCGTGGGCACCCCGGGCT
TATCAAAAAATGGGTTGACCGTCGGAGCGTCCTCGTCTGGCATAATGCGT
CTGACCAGCACGGACTCGAACGGTGACCCATATGGACTGGGCATTACCTT
GGAGTCCGCTTCTCTCGATACTGTCACCTTCTTCAGTTCGTACGGCCCCA
CTTCGGATGGCCGAATTAAGCCGGACGTCGTGGCTCCTGGACAGAACCCA
GAGCATCTGCTGCTGTATGCAGCCGGCAACGACGGGCTCTTCAAATACGA
CAGCGGTCGCGGTGGCATATGCACCGTGGGCACCCCGGGCTTATCAAAAA
ATGGGTTGACCGTCGGAGCGTCCTCGTCTGGCATAATGCGTCTGACCAGC
ACGGACTCGAACGGTGACCCATATGGACTGGGCATTACCTTGGAGTCCGC
TTCTCTCGATACTGTCACCTTCTTCAGTTCGTACGGCCCCACTTCGGATG
GCCGAATTAAGCCGGACGTCGTGGCTCCTGGA
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