mRNA_H-paniculata_contig4553.11423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4553.11423.1
Unique NamemRNA_H-paniculata_contig4553.11423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4553.11423.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.410e-16
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 3 
Query:  141 EHPLVTNMDILRTLAGIIDDEEYMFFALVSTGWRNAWAADRPRVTRAVSAHCTVSQLEYSFACGLRRSVGVCTAVARLGKMKSEAPSAEIKIKLLHCARSHGCGWGRET 467
            ++PL  N+DI+R LA  + DE+++FFA VST WR AW   RP  TRA++ H T SQL +SF+CGLR+   VC A+A  GK++    + E+K           C WGR T
Sbjct:   30 DNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGR-RPTSTRAITEHVTPSQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRARELK-----------CPWGRST 126
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BLAST of mRNA_H-paniculata_contig4553.11423.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.780e-16
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:  150 LVTNMDILRTLAGIIDDEEYMFFALVSTGWRNAWAADRPRVTRAVSAHCTVSQLEYSFACGLRRSVGVCTAVARLGKMKSEAPSAEIKIKLLHCARSHGCGWGRET 467
            L   +DI+ T+A  +DD +Y+FFA VS GWR+ W   RP VT+A++A  +V QL  SF CGLRR+  VC  VA LG++            LL  AR+ GC W   T
Sbjct:    3 LFAAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLD-----------LLRRARAMGCQWNENT 96
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BLAST of mRNA_H-paniculata_contig4553.11423.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.110e-16
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:  141 EHPLVTNMDILRTLAGIIDDEEYMFFALVSTGWRNAWAADRPRVTRAVSAHCTVSQLEYSFACGLRRSVGVCTAVARLGKMKSEAPSAEIKIKLLHCARSHGCGWGRETMAV 476
            E  L   +DI+ T+   +DD +Y+FFA VS GWR+ W   RP VT+A++A  +VSQL  SF CGLRR+  VC  VA LG++            LL  AR+ GC W   T  V
Sbjct:    2 EKQLFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLD-----------LLRRARAMGCPWNENTCYV 101
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BLAST of mRNA_H-paniculata_contig4553.11423.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 9.700e-16
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 3 
Query:  102 EREWARPSVEKRYEHPLVTNMDILRTLAGIIDDEEYMFFALVSTGWRNAWAADRPRVTRAVSAHCTVSQLEYSFACGLRRSVGVCTAVARLGKMKSEAPSAEIKIKLLHCARSHGCGWGRETMAV 476
            ER  A  SV    E  +  N+ +L  LA  +DD +++FFA VS GWR+ W   RP VT+A++A  +V QL  SF CGLRR+  VC  VA LG++            LL  AR+ GC W   T  V
Sbjct:    5 ERLPAGKSVMVHVEDLVTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLD-----------LLQRARAMGCPWNENTCYV 117
[Close]
BLAST of mRNA_H-paniculata_contig4553.11423.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.330e-14
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:  126 VEKRYEHPLVTNMDILRTLAGIIDDEEYMFFALVSTGWRNAWAADRPRVTRAVSAHCTVSQLEYSFACGLRRSVGVCTAVARLGKMKSEAPSAEIKIKLLHCARSHGCGWGR 461
            +EK   +PL +N  ++  L   +D  +Y+FFA V  GW  AW  +RP VTRA +   +VSQL +SF CGLRR+ G+C   A+LG++            LL CA  +GC  G+
Sbjct:    1 MEKTMLNPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWG-ERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLD-----------LLQCAVLNGCPIGK 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4553.11423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFW3_ECTSI1.410e-1644.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE2.780e-1644.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI4.110e-1643.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE9.700e-1641.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU0_ECTSI1.330e-1440.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4553contigH-paniculata_contig4553:2016..3756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Exons2
Model size1322
Cds size1236
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4553.11423.1prot_H-paniculata_contig4553.11423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4553 2102..3756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.9397798-UTR-H-paniculata_contig4553:2015..21011622930363.9397798-UTR-H-paniculata_contig4553:2015..2101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4553 2016..2101 +
1691481258.6471684-UTR-H-paniculata_contig4553:2015..21011691481258.6471684-UTR-H-paniculata_contig4553:2015..2101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4553 2016..2101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.955359-CDS-H-paniculata_contig4553:2101..24281622930363.955359-CDS-H-paniculata_contig4553:2101..2428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 2102..2428 +
1691481258.6596305-CDS-H-paniculata_contig4553:2101..24281691481258.6596305-CDS-H-paniculata_contig4553:2101..2428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 2102..2428 +
1622930363.9673853-CDS-H-paniculata_contig4553:2847..37561622930363.9673853-CDS-H-paniculata_contig4553:2847..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 2848..3756 +
1691481258.669026-CDS-H-paniculata_contig4553:2847..37561691481258.669026-CDS-H-paniculata_contig4553:2847..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4553 2848..3756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4553.11423.1

>prot_H-paniculata_contig4553.11423.1 ID=prot_H-paniculata_contig4553.11423.1|Name=mRNA_H-paniculata_contig4553.11423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp
MTMTIEREWARPSVEKRYEHPLVTNMDILRTLAGIIDDEEYMFFALVSTG
WRNAWAADRPRVTRAVSAHCTVSQLEYSFACGLRRSVGVCTAVARLGKMK
SEAPSAEIKIKLLHCARSHGCGWGRETMAVAAESGSLDVLQHAHALGCAW
DTSTCSGAAREGHLGILQWARATGCPWDERTCSEAAQRGHLGVLRWARDN
GCPWNENVCRSAACGGHLEVLQYVRDNGCPWAKDTCSGAARNGRLDILRW
CRENGCPWDENTCIGAATRGHLEVLQWARANGCPWDAHVCSGAARQGHLG
VLQWARENGCPWDARTTIEAAWGGNLGVLRWARANGCTWNEDTCRWAAWG
GHLEILQWAKANGCPWHHETCFAAAQNGHLDVLEWSRDNGCPGDDEVSQC
SVHPTDEDDDL*
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mRNA from alignment at H-paniculata_contig4553:2016..3756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4553.11423.1 ID=mRNA_H-paniculata_contig4553.11423.1|Name=mRNA_H-paniculata_contig4553.11423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1741bp|location=Sequence derived from alignment at H-paniculata_contig4553:2016..3756+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTAGCCATGCACATCCCTAGCACCACCTCGACACCAGGACGCCCGG
ATTAAGCTCGTGGGAGCCTTTTTCTGATTTGATTGAATGACCATGACCAT
CGAGCGGGAATGGGCAAGACCTTCCGTGGAGAAGCGTTACGAGCATCCAC
TCGTTACCAATATGGACATACTTCGAACGCTCGCCGGAATCATAGACGAC
GAAGAGTATATGTTCTTTGCCCTTGTGTCGACGGGGTGGCGAAACGCTTG
GGCGGCAGACCGGCCCAGGGTGACGAGGGCTGTGTCCGCCCACTGCACGG
TCTCTCAACTCGAGTACAGCTTCGCGTGCGGCCTTCGAAGGAGTGTGGGC
GTGTGCACTGCCGTAGCGCGCCTCGGTAAGATGAAGAGTGAGGCCCCTTC
GGCAGAGATCAAGGTAATGTTATCAGTTTGTGTTGGTGTGCCGCGCTTTT
TTTTTCTCGGCGTTTTTTTTTTCGCCAAGTTGGCATTCTAATGTACAACG
ACGATGGAGTTTTGGGCTCATGTCGAACAGTGATTTCGATAATGGTATAC
CTCGCTTTTCTAACAGTACAGTTTGGATGCTATGAGCGACATAGAGTTTG
TATATACTCTATTATGTGCATAACGGCCCTGTTTACGTAGATTCTATCTA
AAGCCGAACGCTAATGGATTATAGGCCTGTGAGAGGTGATGGCAGCATCT
TGTGTGGCACGGAACCGATTCCTCGTCACAAAACGATCGAATTTGTTGAA
TCGAACGCCAGAACATACGTGGACCCTAACCCCTGCCGCCTGCTTGCCCG
CCCGCCCGCCTGCCGCTTGACACCCTGGCAAGATAAAATTATTGCACTGC
GCACGTTCTCACGGCTGTGGCTGGGGTCGAGAAACCATGGCCGTGGCCGC
CGAATCAGGGAGCCTGGACGTGCTGCAGCACGCGCATGCGCTGGGTTGTG
CCTGGGACACGAGCACGTGCAGCGGGGCAGCTCGCGAAGGACACCTGGGC
ATACTCCAGTGGGCTCGGGCGACAGGTTGCCCGTGGGACGAACGTACGTG
CAGCGAAGCGGCCCAGAGGGGCCACCTCGGTGTGCTTCGTTGGGCGCGCG
ACAACGGCTGCCCGTGGAATGAGAACGTTTGCCGATCGGCCGCCTGCGGC
GGCCACCTCGAAGTCCTGCAGTATGTCCGTGACAATGGCTGCCCGTGGGC
CAAGGACACTTGCAGTGGCGCGGCGAGGAACGGGCGGCTGGATATCCTAC
GATGGTGCCGGGAGAACGGTTGCCCGTGGGACGAAAATACGTGCATCGGA
GCTGCGACGCGAGGCCACCTGGAGGTTCTACAGTGGGCACGCGCGAACGG
ATGTCCCTGGGATGCACACGTTTGCAGCGGGGCTGCTCGCCAGGGACATC
TCGGCGTCCTGCAATGGGCGCGCGAGAACGGGTGCCCTTGGGATGCGAGA
ACCACCATCGAAGCGGCTTGGGGCGGGAATCTCGGGGTCCTCCGGTGGGC
ACGCGCCAACGGCTGCACGTGGAATGAGGACACCTGTCGTTGGGCGGCGT
GGGGGGGGCACCTGGAGATTCTTCAGTGGGCAAAGGCCAACGGATGCCCG
TGGCATCACGAGACTTGCTTCGCGGCTGCGCAAAACGGACACCTGGACGT
GCTCGAGTGGTCGAGGGACAACGGATGCCCTGGCGACGACGAAGTTTCCC
AGTGCTCCGTGCATCCTACTGACGAGGACGATGACCTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4553:2016..3756+

>mRNA_H-paniculata_contig4553.11423.1 ID=mRNA_H-paniculata_contig4553.11423.1|Name=mRNA_H-paniculata_contig4553.11423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at H-paniculata_contig4553:2016..3756+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCATGACCATCGAGCGGGAATGGGCAAGACCTTCCGTGGAGAAGCG
TTACGAGCATCCACTCGTTACCAATATGGACATACTTCGAACGCTCGCCG
GAATCATAGACGACGAAGAGTATATGTTCTTTGCCCTTGTGTCGACGGGG
TGGCGAAACGCTTGGGCGGCAGACCGGCCCAGGGTGACGAGGGCTGTGTC
CGCCCACTGCACGGTCTCTCAACTCGAGTACAGCTTCGCGTGCGGCCTTC
GAAGGAGTGTGGGCGTGTGCACTGCCGTAGCGCGCCTCGGTAAGATGAAG
AGTGAGGCCCCTTCGGCAGAGATCAAGATGACCATGACCATCGAGCGGGA
ATGGGCAAGACCTTCCGTGGAGAAGCGTTACGAGCATCCACTCGTTACCA
ATATGGACATACTTCGAACGCTCGCCGGAATCATAGACGACGAAGAGTAT
ATGTTCTTTGCCCTTGTGTCGACGGGGTGGCGAAACGCTTGGGCGGCAGA
CCGGCCCAGGGTGACGAGGGCTGTGTCCGCCCACTGCACGGTCTCTCAAC
TCGAGTACAGCTTCGCGTGCGGCCTTCGAAGGAGTGTGGGCGTGTGCACT
GCCGTAGCGCGCCTCGGTAAGATGAAGAGTGAGGCCCCTTCGGCAGAGAT
CAAGATAAAATTATTGCACTGCGCACGTTCTCACGGCTGTGGCTGGGGTC
GAGAAACCATGGCCGTGGCCGCCGAATCAGGGAGCCTGGACGTGCTGCAG
CACGCGCATGCGCTGGGTTGTGCCTGGGACACGAGCACGTGCAGCGGGGC
AGCTCGCGAAGGACACCTGGGCATACTCCAGTGGGCTCGGGCGACAGGTT
GCCCGTGGGACGAACGTACGTGCAGCGAAGCGGCCCAGAGGGGCCACCTC
GGTGTGCTTCGTTGGGCGCGCGACAACGGCTGCCCGTGGAATGAGAACGT
TTGCCGATCGGCCGCCTGCGGCGGCCACCTCGAAGTCCTGCAGTATGTCC
GTGACAATGGCTGCCCGTGGGCCAAGGACACTTGCAGTGGCGCGGCGAGG
AACGGGCGGCTGGATATCCTACGATGGTGCCGGGAGAACGGTTGCCCGTG
GGACGAAAATACGTGCATCGGAGCTGCGACGCGAGGCCACCTGGAGGTTC
TACAGTGGGCACGCGCGAACGGATGTCCCTGGGATGCACACGTTTGCAGC
GGGGCTGCTCGCCAGGGACATCTCGGCGTCCTGCAATGGGCGCGCGAGAA
CGGGTGCCCTTGGGATGCGAGAACCACCATCGAAGCGGCTTGGGGCGGGA
ATCTCGGGGTCCTCCGGTGGGCACGCGCCAACGGCTGCACGTGGAATGAG
GACACCTGTCGTTGGGCGGCGTGGGGGGGGCACCTGGAGATTCTTCAGTG
GGCAAAGGCCAACGGATGCCCGTGGCATCACGAGACTTGCTTCGCGGCTG
CGCAAAACGGACACCTGGACGTGCTCGAGTGGTCGAGGGACAACGGATGC
CCTGGCGACGACGAAGTTTCCCAGTGCTCCGTGCATCCTACTGACGAGGA
CGATGACCTTTAGATAAAATTATTGCACTGCGCACGTTCTCACGGCTGTG
GCTGGGGTCGAGAAACCATGGCCGTGGCCGCCGAATCAGGGAGCCTGGAC
GTGCTGCAGCACGCGCATGCGCTGGGTTGTGCCTGGGACACGAGCACGTG
CAGCGGGGCAGCTCGCGAAGGACACCTGGGCATACTCCAGTGGGCTCGGG
CGACAGGTTGCCCGTGGGACGAACGTACGTGCAGCGAAGCGGCCCAGAGG
GGCCACCTCGGTGTGCTTCGTTGGGCGCGCGACAACGGCTGCCCGTGGAA
TGAGAACGTTTGCCGATCGGCCGCCTGCGGCGGCCACCTCGAAGTCCTGC
AGTATGTCCGTGACAATGGCTGCCCGTGGGCCAAGGACACTTGCAGTGGC
GCGGCGAGGAACGGGCGGCTGGATATCCTACGATGGTGCCGGGAGAACGG
TTGCCCGTGGGACGAAAATACGTGCATCGGAGCTGCGACGCGAGGCCACC
TGGAGGTTCTACAGTGGGCACGCGCGAACGGATGTCCCTGGGATGCACAC
GTTTGCAGCGGGGCTGCTCGCCAGGGACATCTCGGCGTCCTGCAATGGGC
GCGCGAGAACGGGTGCCCTTGGGATGCGAGAACCACCATCGAAGCGGCTT
GGGGCGGGAATCTCGGGGTCCTCCGGTGGGCACGCGCCAACGGCTGCACG
TGGAATGAGGACACCTGTCGTTGGGCGGCGTGGGGGGGGCACCTGGAGAT
TCTTCAGTGGGCAAAGGCCAACGGATGCCCGTGGCATCACGAGACTTGCT
TCGCGGCTGCGCAAAACGGACACCTGGACGTGCTCGAGTGGTCGAGGGAC
AACGGATGCCCTGGCGACGACGAAGTTTCCCAGTGCTCCGTGCATCCTAC
TGACGAGGACGATGACCTTTAG
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