mRNA_H-paniculata_contig45529.11422.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 3.730e-20 Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
GL++P RVPQGV+NAT+Y+Q M ++L L C+V+VDD+V W E E +LL LDL+L R GLF AAHK FYTT+V
Sbjct: 777 GLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSV 855
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.960e-20 Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
GL+TP RVPQG++NAT+YFQ + +L+GL C V+VDDVV W D+ +LL LDL+L+RL GL+ AAHK F+ T++
Sbjct: 875 GLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSI 953
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.510e-14 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
G+FTPTRVPQG +A +FQ ++ VL LVG+C +V++DD++++AE + ELL +D VL++L E G K + T +
Sbjct: 310 GVFTPTRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYGFILNPKKCSLFRTEI 391
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A2P4YLW7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLW7_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 6.100e-14 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
G+FTPTRVPQG +A +FQ M++ VL LVG+C +V++DD++++AE + ELL +D VL++ E G K + T +
Sbjct: 113 GVFTPTRVPQGSTDAALHFQSMVQMVLGELVGKCVIVWIDDLLVFAETQSELLDVIDAVLQKFDEYGFILNPKKCSLFQTEI 194
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A6A3X8Z5_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X8Z5_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 8.910e-13 Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
G+FTPTRVPQG +A +FQ + VL LV +C +V++DD++++A+ E EL+ ++ VL +L E GL K+ + T V
Sbjct: 32 GVFTPTRVPQGSTDAALHFQFTVEMVLGELVNKCVIVWIDDLLVFADTEEELVDAIEAVLTKLGEYGLKLNPKKSALFLTEV 113
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A2P4XIX6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIX6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.590e-12 Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTT 240
G+FTPTRVPQG +A +FQ + VL LVG+C +V++DD++++AE +L+ +D +L++L E G K + T
Sbjct: 651 GVFTPTRVPQGSTDAALHFQSTVEMVLGDLVGKCVIVWIDDLLVFAESADQLVESIDAILQKLDEHGFILNPKKCSLFLT 730
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A2P4X0M2_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X0M2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.510e-12 Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 4 LFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
+FTPTRVPQG +A +FQ + VL LVG+C +V++DD++++AE +L+ +D +L++L E G K+ + T V
Sbjct: 587 VFTPTRVPQGCTDAALHFQSTVEMVLGDLVGKCAIVWIDDLLVFAETADQLVESIDAILQKLDEHGFILNPKKSSLFLTEV 667
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A2P4Y427_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y427_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.210e-11 Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
G+FTPTRVPQG +A +FQ + VL LV +C +V++DD++++A + EL+ +D+VL +L E GL K+ + V
Sbjct: 479 GIFTPTRVPQGSTDAALHFQSTVEMVLGDLVNKCVIVWIDDLLVFANTQEELVGAIDVVLTKLDEHGLILNPKKSTVFLKEV 560
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.230e-11 Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGL 204
GL TP RVPQG++NAT+YFQ + +LEGL CLV+VD VV +E +LL LD+++ERL GL
Sbjct: 656 GLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGL 720
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Match: A0A5S6QPV1_TRIMR (Uncharacterized protein n=3 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QPV1_TRIMR) HSP 1 Score: 67.8 bits (164), Expect = 2.330e-11 Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1 GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMEVGLFAAAHKAVFYTTTV 246
GL+ +P G+ NA A FQ +M VLEGL R CLVY+DD++++A E ++RLD VL RL + GL K TT V
Sbjct: 620 GLYQFRVMPFGLCNAPATFQRLMEKVLEGLQWRTCLVYLDDIIVFARTPTEQMQRLDEVLNRLQKAGLKLKPSKCKLMTTEV 701 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45529.11422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig45529.11422.1 >prot_H-paniculata_contig45529.11422.1 ID=prot_H-paniculata_contig45529.11422.1|Name=mRNA_H-paniculata_contig45529.11422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp GLFTPTRVPQGVVNATAYFQEMMRTVLEGLVGRCCLVYVDDVVLWAEDEGback to top mRNA from alignment at H-paniculata_contig45529:27..277+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig45529.11422.1 ID=mRNA_H-paniculata_contig45529.11422.1|Name=mRNA_H-paniculata_contig45529.11422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=251bp|location=Sequence derived from alignment at H-paniculata_contig45529:27..277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig45529:27..277+ >mRNA_H-paniculata_contig45529.11422.1 ID=mRNA_H-paniculata_contig45529.11422.1|Name=mRNA_H-paniculata_contig45529.11422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig45529:27..277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |