mRNA_H-paniculata_contig11794.1142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11794.1142.1
Unique NamemRNA_H-paniculata_contig11794.1142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11794.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11794contigH-paniculata_contig11794:3362..4579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11794.1142.1prot_H-paniculata_contig11794.1142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11794 3368..4579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.6658432-UTR-H-paniculata_contig11794:3361..33671622928888.6658432-UTR-H-paniculata_contig11794:3361..3367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11794 3362..3367 +
1691480657.6351385-UTR-H-paniculata_contig11794:3361..33671691480657.6351385-UTR-H-paniculata_contig11794:3361..3367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11794 3362..3367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.6991158-CDS-H-paniculata_contig11794:3367..35261622928888.6991158-CDS-H-paniculata_contig11794:3367..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11794 3368..3526 +
1691480657.6471086-CDS-H-paniculata_contig11794:3367..35261691480657.6471086-CDS-H-paniculata_contig11794:3367..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11794 3368..3526 +
1622928888.7191958-CDS-H-paniculata_contig11794:4231..45791622928888.7191958-CDS-H-paniculata_contig11794:4231..4579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11794 4232..4579 +
1691480657.6633618-CDS-H-paniculata_contig11794:4231..45791691480657.6633618-CDS-H-paniculata_contig11794:4231..4579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11794 4232..4579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11794.1142.1

>prot_H-paniculata_contig11794.1142.1 ID=prot_H-paniculata_contig11794.1142.1|Name=mRNA_H-paniculata_contig11794.1142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MTKSRLKSHRGPLSDWNICRNDETDSPPNLDMLLLAGAERAPKSPKMDGN
AFKGRMSSCDKQTALNKRYGGTGGREHLRKRSPSLPPPLLPLPPPPSTTK
TTSDPYNVAEEDGGGGFWRQRHRSCKTKTSGRNNSSSSNSTSRHQNSGHN
NSEPSQQQHDLQYRVMADR
back to top

mRNA from alignment at H-paniculata_contig11794:3362..4579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11794.1142.1 ID=mRNA_H-paniculata_contig11794.1142.1|Name=mRNA_H-paniculata_contig11794.1142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig11794:3362..4579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAATGACGAAGAGCCGTCTAAAGAGCCACCGCGGCCCACTGAGCGA
CTGGAATATTTGCCGCAATGACGAGACTGATAGCCCGCCCAATTTGGATA
TGCTTCTGCTCGCCGGGGCCGAGCGCGCGCCGAAGTCGCCTAAGATGGAC
GGCAATGCCTTCAAGGTAACGAGCAGAGATATGTGGAGAGAGGGTTGTGT
TCCAATTTGCCTGCTGTGGGATGTGATTTAAACGAAAGCTGTCAGACGTC
ACGTGCTCGATTTGGGTTGGATACTGGCCATACTAAGAATAGAAGAGATA
ATAATGGAGACAAATCCCAAATCCTGTGGCAATGTAGATATGTTGCGTGT
GACGGTGGCGAGTGGTACGAACACGTTGAGACTGTGATCCTGAAATGATG
TCACCCACGAGTCGGCATGTGCGACGAAGGTTATACTGAAGCACGCATTG
AATTTGTATTATTTATGAATACTTGTATGTGTGTCCTTCGAGCTGTCTCT
CGAATGGGGAAGAAAAAATACCAACGTTTTGAACAGTCCTAACTTGTTGA
TACCTCATAGCCTTCGCGTCCGTGATCGCGGCTGACTCAACGGCAGTTTG
AAGTAGACAGACACCCCCGCTGGGTCGGGCGTAAACTTTACGTACTGGCC
TTAGTTTTAGCGCTGACCCTTTGATGGCCTGGGCTTTGCGTTGCCGTTTA
GCAATAGCAATGAAGATCGTCGACCAACACACAGTGTTACGTACGTTTTG
AAAGTCGGAGTCCACACTGTGGCATCCATACACTTTGGCAAACAACTGCA
CCATTTTAACACCCAACAAACCGTAACGTTCATGCCTTCCTTCCCTACGC
GTGTGCGGCCGCACAACCAGGGGCGTATGAGCTCTTGCGACAAGCAGACG
GCCTTGAACAAAAGATATGGTGGGACTGGGGGGAGAGAACACCTGAGGAA
GAGAAGCCCCTCGCTTCCGCCGCCGCTCCTGCCCCTGCCACCGCCGCCAA
GCACAACCAAAACCACCTCGGACCCCTACAACGTAGCTGAGGAGGATGGG
GGGGGTGGGTTTTGGAGACAGAGACACCGTAGCTGCAAAACCAAAACCAG
CGGCAGGAACAACAGTAGCAGCAGCAACAGTACTAGTAGGCACCAAAACA
GTGGCCACAATAACTCCGAGCCTTCGCAGCAGCAGCATGATCTTCAGTAC
CGTGTAATGGCGGATAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11794:3362..4579+

>mRNA_H-paniculata_contig11794.1142.1 ID=mRNA_H-paniculata_contig11794.1142.1|Name=mRNA_H-paniculata_contig11794.1142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig11794:3362..4579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGAGCCGTCTAAAGAGCCACCGCGGCCCACTGAGCGACTGGAA
TATTTGCCGCAATGACGAGACTGATAGCCCGCCCAATTTGGATATGCTTC
TGCTCGCCGGGGCCGAGCGCGCGCCGAAGTCGCCTAAGATGGACGGCAAT
GCCTTCAAGATGACGAAGAGCCGTCTAAAGAGCCACCGCGGCCCACTGAG
CGACTGGAATATTTGCCGCAATGACGAGACTGATAGCCCGCCCAATTTGG
ATATGCTTCTGCTCGCCGGGGCCGAGCGCGCGCCGAAGTCGCCTAAGATG
GACGGCAATGCCTTCAAGGGGCGTATGAGCTCTTGCGACAAGCAGACGGC
CTTGAACAAAAGATATGGTGGGACTGGGGGGAGAGAACACCTGAGGAAGA
GAAGCCCCTCGCTTCCGCCGCCGCTCCTGCCCCTGCCACCGCCGCCAAGC
ACAACCAAAACCACCTCGGACCCCTACAACGTAGCTGAGGAGGATGGGGG
GGGTGGGTTTTGGAGACAGAGACACCGTAGCTGCAAAACCAAAACCAGCG
GCAGGAACAACAGTAGCAGCAGCAACAGTACTAGTAGGCACCAAAACAGT
GGCCACAATAACTCCGAGCCTTCGCAGCAGCAGCATGATCTTCAGTACCG
TGTAATGGCGGATAGGGGGCGTATGAGCTCTTGCGACAAGCAGACGGCCT
TGAACAAAAGATATGGTGGGACTGGGGGGAGAGAACACCTGAGGAAGAGA
AGCCCCTCGCTTCCGCCGCCGCTCCTGCCCCTGCCACCGCCGCCAAGCAC
AACCAAAACCACCTCGGACCCCTACAACGTAGCTGAGGAGGATGGGGGGG
GTGGGTTTTGGAGACAGAGACACCGTAGCTGCAAAACCAAAACCAGCGGC
AGGAACAACAGTAGCAGCAGCAACAGTACTAGTAGGCACCAAAACAGTGG
CCACAATAACTCCGAGCCTTCGCAGCAGCAGCATGATCTTCAGTACCGTG
TAATGGCGGATAGG
back to top