prot_H-paniculata_contig45474.11415.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig45474.11415.1
Unique Nameprot_H-paniculata_contig45474.11415.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length107
Homology
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BLAST of mRNA_H-paniculata_contig45474.11415.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.050e-12
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:    3 KPD----GKAAWDGLVSKYQNSSKQRRRLLMRQLDGLSMTENQDPDIFLTQVFQLRDELEYTGEIVSEDRLTDIVLEGLSAN-YDMIKYNAERDPDFSL 96
            KPD    G  AW  LV KY+N S+QR+++L ++L  ++M  + DPD F+  + +LRDEL+  G  + +D+  +I+L+ L    Y  IKY AE   D +L
Sbjct:  222 KPDMMFHGIVAWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTL 320
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BLAST of mRNA_H-paniculata_contig45474.11415.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.030e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 0 
Query:    6 GKAAWDGLVSKYQNSSKQRRRLLMRQLDGLSMTENQDPDIFLTQVFQLRDELEYTGEIVSEDRLTDIVLEGLSANYDMIKYNAERDPDFSLLKSRE 101
            G A W  L SK+Q + + RRR L R+L+  +M    DPDIF+T V+ L ++L + G  V++++L DI+L+GL A Y +I   +    D  LL   E
Sbjct:  232 GLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGASGHYLDSELLPDLE 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45474.11415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE8.050e-1239.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KY84_9PHAE9.030e-1239.58Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 7..93
e-value: 3.9E-13
score: 49.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45474contigH-paniculata_contig45474:1150..1470 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45474.11415.1mRNA_H-paniculata_contig45474.11415.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig45474 1150..1470 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig45474.11415.1 ID=prot_H-paniculata_contig45474.11415.1|Name=mRNA_H-paniculata_contig45474.11415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
GCKPDGKAAWDGLVSKYQNSSKQRRRLLMRQLDGLSMTENQDPDIFLTQV
FQLRDELEYTGEIVSEDRLTDIVLEGLSANYDMIKYNAERDPDFSLLKSR
ELCGTCL
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