mRNA_H-paniculata_contig45474.11415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45474.11415.1
Unique NamemRNA_H-paniculata_contig45474.11415.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig45474.11415.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.050e-12
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    7 KPD----GKAAWDGLVSKYQNSSKQRRRLLMRQLDGLSMTENQDPDIFLTQVFQLRDELEYTGEIVSEDRLTDIVLEGLSAN-YDMIKYNAERDPDFSL 288
            KPD    G  AW  LV KY+N S+QR+++L ++L  ++M  + DPD F+  + +LRDEL+  G  + +D+  +I+L+ L    Y  IKY AE   D +L
Sbjct:  222 KPDMMFHGIVAWKALVKKYRNPSRQRQKILFKKLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTL 320
[Close]
BLAST of mRNA_H-paniculata_contig45474.11415.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.030e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   16 GKAAWDGLVSKYQNSSKQRRRLLMRQLDGLSMTENQDPDIFLTQVFQLRDELEYTGEIVSEDRLTDIVLEGLSANYDMIKYNAERDPDFSLLKSRE 303
            G A W  L SK+Q + + RRR L R+L+  +M    DPDIF+T V+ L ++L + G  V++++L DI+L+GL A Y +I   +    D  LL   E
Sbjct:  232 GLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGASGHYLDSELLPDLE 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45474.11415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE8.050e-1239.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KY84_9PHAE9.030e-1239.58Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45474contigH-paniculata_contig45474:1150..1470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.0841537-CDS-H-paniculata_contig45474:1149..14701622930363.0841537-CDS-H-paniculata_contig45474:1149..1470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45474 1150..1470 -
1691481258.3209724-CDS-H-paniculata_contig45474:1149..14701691481258.3209724-CDS-H-paniculata_contig45474:1149..1470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45474 1150..1470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45474.11415.1prot_H-paniculata_contig45474.11415.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45474 1150..1470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45474.11415.1

>prot_H-paniculata_contig45474.11415.1 ID=prot_H-paniculata_contig45474.11415.1|Name=mRNA_H-paniculata_contig45474.11415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
GCKPDGKAAWDGLVSKYQNSSKQRRRLLMRQLDGLSMTENQDPDIFLTQV
FQLRDELEYTGEIVSEDRLTDIVLEGLSANYDMIKYNAERDPDFSLLKSR
ELCGTCL
back to top

mRNA from alignment at H-paniculata_contig45474:1150..1470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45474.11415.1 ID=mRNA_H-paniculata_contig45474.11415.1|Name=mRNA_H-paniculata_contig45474.11415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig45474:1150..1470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTGTAAACCTGACGGCAAAGCAGCGTGGGATGGCCTCGTTTCCAAGTA
CCAAAACTCTTCAAAACAGAGGCGTCGTTTACTCATGAGACAGCTAGATG
GGTTGTCGATGACTGAGAATCAAGATCCTGATATTTTTCTGACTCAAGTA
TTTCAGCTACGCGACGAGCTAGAATATACGGGGGAAATAGTCTCAGAAGA
CCGTTTGACGGACATCGTACTGGAAGGGTTATCAGCTAATTATGACATGA
TAAAGTACAACGCTGAACGCGATCCCGACTTCAGTCTTTTGAAATCGAGG
GAACTTTGCGGAACATGTTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig45474:1150..1470-

>mRNA_H-paniculata_contig45474.11415.1 ID=mRNA_H-paniculata_contig45474.11415.1|Name=mRNA_H-paniculata_contig45474.11415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig45474:1150..1470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTGTAAACCTGACGGCAAAGCAGCGTGGGATGGCCTCGTTTCCAAGTA
CCAAAACTCTTCAAAACAGAGGCGTCGTTTACTCATGAGACAGCTAGATG
GGTTGTCGATGACTGAGAATCAAGATCCTGATATTTTTCTGACTCAAGTA
TTTCAGCTACGCGACGAGCTAGAATATACGGGGGAAATAGTCTCAGAAGA
CCGTTTGACGGACATCGTACTGGAAGGGTTATCAGCTAATTATGACATGA
TAAAGTACAACGCTGAACGCGATCCCGACTTCAGTCTTTTGAAATCGAGG
GAACTTTGCGGAACATGTTTGGGTTGTAAACCTGACGGCAAAGCAGCGTG
GGATGGCCTCGTTTCCAAGTACCAAAACTCTTCAAAACAGAGGCGTCGTT
TACTCATGAGACAGCTAGATGGGTTGTCGATGACTGAGAATCAAGATCCT
GATATTTTTCTGACTCAAGTATTTCAGCTACGCGACGAGCTAGAATATAC
GGGGGAAATAGTCTCAGAAGACCGTTTGACGGACATCGTACTGGAAGGGT
TATCAGCTAATTATGACATGATAAAGTACAACGCTGAACGCGATCCCGAC
TTCAGTCTTTTGAAATCGAGGGAACTTTGCGGAACATGTTTG
back to top