mRNA_H-paniculata_contig45454.11413.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45454.11413.1
Unique NamemRNA_H-paniculata_contig45454.11413.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45454.11413.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 RYTFPNEEISHVILGDRDLARAEIVSALEAHPCTPPIVTVSWLLETCRAGRLLPT 165
            RYT PNEE++HV+LGDR LA+ E++SALE+HPCTPP+V   WLLETCRAGR+LPT
Sbjct:  349 RYTSPNEELTHVVLGDRTLAKPELISALESHPCTPPVVHALWLLETCRAGRMLPT 403
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BLAST of mRNA_H-paniculata_contig45454.11413.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 9.410e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 RYTFPNEEISHVILGDRDLARAEIVSALEAHPCTPPIVTVSWLLETCRAGRLLPT 165
            RY  PNEE++HV+LGDR LA+ E++SALE+HPCTPP+V   WLLETCRAGR+LPT
Sbjct:  230 RYISPNEELTHVVLGDRALAKPELISALESHPCTPPVVHALWLLETCRAGRMLPT 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45454.11413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJL2_9PHAE1.060e-2172.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G795_ECTSI9.410e-2170.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45454contigH-paniculata_contig45454:1053..1226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog2880.D7G795
KEGG koko:K03507,ko:K10728
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein localization to site of double-strand break
EggNOG OGsKOG1929@1,KOG1929@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko03400
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930362.868205-CDS-H-paniculata_contig45454:1052..12261622930362.868205-CDS-H-paniculata_contig45454:1052..1226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45454 1053..1226 +
1691481258.2150433-CDS-H-paniculata_contig45454:1052..12261691481258.2150433-CDS-H-paniculata_contig45454:1052..1226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45454 1053..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45454.11413.1prot_H-paniculata_contig45454.11413.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45454 1053..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45454.11413.1

>prot_H-paniculata_contig45454.11413.1 ID=prot_H-paniculata_contig45454.11413.1|Name=mRNA_H-paniculata_contig45454.11413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
RYTFPNEEISHVILGDRDLARAEIVSALEAHPCTPPIVTVSWLLETCRAG
RLLPTAE*
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mRNA from alignment at H-paniculata_contig45454:1053..1226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45454.11413.1 ID=mRNA_H-paniculata_contig45454.11413.1|Name=mRNA_H-paniculata_contig45454.11413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig45454:1053..1226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACACGTTTCCCAACGAAGAAATAAGTCATGTCATCCTGGGAGACCG
AGATCTCGCTAGAGCGGAGATCGTGTCCGCGCTAGAGGCGCACCCCTGCA
CCCCTCCTATCGTCACGGTCTCCTGGCTCCTAGAAACCTGCCGCGCGGGG
CGACTTCTTCCCACCGCAGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45454:1053..1226+

>mRNA_H-paniculata_contig45454.11413.1 ID=mRNA_H-paniculata_contig45454.11413.1|Name=mRNA_H-paniculata_contig45454.11413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig45454:1053..1226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACACGTTTCCCAACGAAGAAATAAGTCATGTCATCCTGGGAGACCG
AGATCTCGCTAGAGCGGAGATCGTGTCCGCGCTAGAGGCGCACCCCTGCA
CCCCTCCTATCGTCACGGTCTCCTGGCTCCTAGAAACCTGCCGCGCGGGG
CGACTTCTTCCCACCGCAGAGTGAAGGTACACGTTTCCCAACGAAGAAAT
AAGTCATGTCATCCTGGGAGACCGAGATCTCGCTAGAGCGGAGATCGTGT
CCGCGCTAGAGGCGCACCCCTGCACCCCTCCTATCGTCACGGTCTCCTGG
CTCCTAGAAACCTGCCGCGCGGGGCGACTTCTTCCCACCGCAGAGTGA
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