mRNA_H-paniculata_contig4544.11410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4544.11410.1
Unique NamemRNA_H-paniculata_contig4544.11410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4544.11410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4544contigH-paniculata_contig4544:5882..6622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size663
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4544.11410.1prot_H-paniculata_contig4544.11410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4544 6060..6524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930362.577485-UTR-H-paniculata_contig4544:5881..60591622930362.577485-UTR-H-paniculata_contig4544:5881..6059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 5882..6059 +
1691481258.1101487-UTR-H-paniculata_contig4544:5881..60591691481258.1101487-UTR-H-paniculata_contig4544:5881..6059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 5882..6059 +
1622930362.630215-UTR-H-paniculata_contig4544:6524..66221622930362.630215-UTR-H-paniculata_contig4544:6524..6622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 6525..6622 +
1691481258.1360984-UTR-H-paniculata_contig4544:6524..66221691481258.1360984-UTR-H-paniculata_contig4544:6524..6622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 6525..6622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930362.593738-CDS-H-paniculata_contig4544:6059..63501622930362.593738-CDS-H-paniculata_contig4544:6059..6350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 6060..6350 +
1691481258.118263-CDS-H-paniculata_contig4544:6059..63501691481258.118263-CDS-H-paniculata_contig4544:6059..6350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 6060..6350 +
1622930362.6152616-CDS-H-paniculata_contig4544:6428..65241622930362.6152616-CDS-H-paniculata_contig4544:6428..6524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 6429..6524 +
1691481258.1285896-CDS-H-paniculata_contig4544:6428..65241691481258.1285896-CDS-H-paniculata_contig4544:6428..6524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 6429..6524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4544.11410.1

>prot_H-paniculata_contig4544.11410.1 ID=prot_H-paniculata_contig4544.11410.1|Name=mRNA_H-paniculata_contig4544.11410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MISSTHTCDQFPINSSPPRPKRRESCATEAHFNPVGTKLLTPYVPKEGGV
SSYSLNTKPKIKALKTAKTESPCTGHAPTSSPELARAFVLPNIGGGVFPI
AEVLVDEVLCQLLTVVGCPDAGRPFENN*
back to top

mRNA from alignment at H-paniculata_contig4544:5882..6622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4544.11410.1 ID=mRNA_H-paniculata_contig4544.11410.1|Name=mRNA_H-paniculata_contig4544.11410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at H-paniculata_contig4544:5882..6622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGGCGGCGCAAACTCGCCGAGTTCTGCATCAACAGCATTCGAGTTGG
TGGGAACTTGGTCGCATGTGACATCTTGTTCGTCAATTTTGCTGTAGCTC
CAAGGTGCGAGGTTCCTTTCTCGCCATTTCCGCCACAACTGTCGAAATTG
GTTGCGTGTGTGTAACAAGTGGACGAACATGATTTCCTCTACACACACAT
GCGACCAATTTCCCATCAACTCGAGTCCTCCTCGTCCAAAACGCAGGGAG
TCATGCGCCACCGAGGCCCACTTTAATCCCGTGGGAACTAAACTTCTGAC
TCCTTACGTTCCGAAAGAAGGAGGTGTTTCCTCCTACTCCCTCAACACTA
AACCCAAGATAAAAGCCCTCAAAACAGCAAAAACGGAGTCCCCTTGCACT
GGACATGCACCAACCAGCTCTCCAGAGCTAGCGAGGGCATTTGTTTTGCC
CAATATAGGGGGAGGGGTCATCATCCGGCTATAAAATAATCTACTGCTGC
AGAGTACTGCCGCCTTTTCATGGGGTCAATTTTTTCGCGCCAAATCGTTT
CCGATCGCTGAGGTACTTGTTGATGAGGTATTGTGTCAACTACTAACAGT
AGTGGGCTGCCCTGATGCAGGACGTCCCTTTGAGAACAATTAGGTCTGGG
AAAGCATTACACCAAAGCATCTTTGCCGACATGTTGTTATTGTCCATCCT
CTCCCGCGCGCACTAAGAAGTAGCCGATGCAACATTGTCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4544:5882..6622+

>mRNA_H-paniculata_contig4544.11410.1 ID=mRNA_H-paniculata_contig4544.11410.1|Name=mRNA_H-paniculata_contig4544.11410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig4544:5882..6622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTCCTCTACACACACATGCGACCAATTTCCCATCAACTCGAGTCC
TCCTCGTCCAAAACGCAGGGAGTCATGCGCCACCGAGGCCCACTTTAATC
CCGTGGGAACTAAACTTCTGACTCCTTACGTTCCGAAAGAAGGAGGTGTT
TCCTCCTACTCCCTCAACACTAAACCCAAGATAAAAGCCCTCAAAACAGC
AAAAACGGAGTCCCCTTGCACTGGACATGCACCAACCAGCTCTCCAGAGC
TAGCGAGGGCATTTGTTTTGCCCAATATAGGGGGAGGGGTCATGATTTCC
TCTACACACACATGCGACCAATTTCCCATCAACTCGAGTCCTCCTCGTCC
AAAACGCAGGGAGTCATGCGCCACCGAGGCCCACTTTAATCCCGTGGGAA
CTAAACTTCTGACTCCTTACGTTCCGAAAGAAGGAGGTGTTTCCTCCTAC
TCCCTCAACACTAAACCCAAGATAAAAGCCCTCAAAACAGCAAAAACGGA
GTCCCCTTGCACTGGACATGCACCAACCAGCTCTCCAGAGCTAGCGAGGG
CATTTGTTTTGCCCAATATAGGGGGAGGGGTCTTTCCGATCGCTGAGGTA
CTTGTTGATGAGGTATTGTGTCAACTACTAACAGTAGTGGGCTGCCCTGA
TGCAGGACGTCCCTTTGAGAACAATTAGTTTCCGATCGCTGAGGTACTTG
TTGATGAGGTATTGTGTCAACTACTAACAGTAGTGGGCTGCCCTGATGCA
GGACGTCCCTTTGAGAACAATTAG
back to top