prot_H-paniculata_contig4540.11405.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4540.11405.1
Unique Nameprot_H-paniculata_contig4540.11405.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length528
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4540.11405.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI)

HSP 1 Score: 535 bits (1379), Expect = 9.140e-181
Identity = 311/526 (59.13%), Postives = 367/526 (69.77%), Query Frame = 0 
Query:    1 MLFLAGAPNRGPGAVSPTPHEVDWGDGGGSGEGDPDLHDYFFRGEPRALGFYRGQAYRAASSGVSVDVHCFASKSCNHFGLSSIAPLAMTTGGGLFRHSLLHQQEGEKRAAHIAREVQHELLQPRVYDGLLRIRTSSECCVNRNGVYGNLSADPRLEDLWHVASCASAQAFSMDFEYRATGVAGLEVD---NRDLVATVQSAFAFTAVVPDTAAAXXXXXXXXXXXXXXXXXXXTPLRMVTVRRLRVSTSRTASSSRVEEVAGMADPATVAGVLAHKVVSEARRSGFMEARALLRDWLSNFVYGLARMLPIPDGANDSGNGGVGGAGEGDASRVLSHPRVVGMARLVFGLLQSPLLHPTRGVPDERISLLSRLSALDPDSLSIVLYPEMQGYATPDVRMANNLSLSRETVKSASSSCRVFVIDTFWRVIVHYVDTPETMAASAAAAGSGDAPLSFPPPAHSAIGQYLAMRRSVRPMAGQEVVYSRPDTPEAFFFEEAMLEDRPLPKSEKSQTFSEFFAELKRDALQ 523
            MLFL GAP+RGPGA+      V  G G  + E +  +H   F G+PRALGFYRGQAYRAAS GVSVDVHCFA+K+C HFGLSS+APLAMTTGGG++RHSLLHQ+EGE RA  +AREV  ELLQPRV    LR   +S                                 F+MDFE+R  G  G E+         ATVQSAFA+TAVVPD  A+                      RMVTVRRLRVST RT SS  VE VA  ADPATVA VLAHKVVSEARRSGF EAR LLRDWL+NF+ GLA  L   +G  +S   G GG  +  A  ++++P +VG+AR VFGLLQSP+LHPT+G+ DER+SLLSRLS+LDP+SLSI LYPEMQGYATPD+R+AN+LSLSR+ V  AS +CR+FV+DTFWRV+VHY D+P ++AA  AA   G+APL FPP   SAIGQYL MRR+VRP+AGQEVVYSRP TPEAFFFEE +LEDRPLP++EK++TF  FFAE+ RD LQ
Sbjct:  274 MLFLGGAPDRGPGALGVVSPNVAGG-GKRNVETEGFVHHQLFPGKPRALGFYRGQAYRAASCGVSVDVHCFANKTCGHFGLSSLAPLAMTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRV----LRRPLAS---------------------------------FAMDFEFRGAG-GGAELQWXXXXXASATVQSAFAYTAVVPDANASSEAASDNAINGGEAT----NAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQA--LMANPLIVGVARQVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSPASLAAGEAA---GEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRAEKAETFKGFFAEIVRDVLQ 751
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4540.11405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFU2_ECTSI9.140e-18159.13Sec23_helical domain-containing protein n=2 Tax=Ec... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.730coord: 232..397
e-value: 4.2E-13
score: 51.2
NoneNo IPR availablePANTHERPTHR13803SEC24-RELATED PROTEINcoord: 3..517
NoneNo IPR availablePANTHERPTHR13803:SF10coord: 3..517
IPR006900Sec23/Sec24, helical domainPFAMPF04815Sec23_helicalcoord: 263..379
e-value: 3.9E-10
score: 39.5
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 1..118
e-value: 1.5E-9
score: 39.4
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 1..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4540contigH-paniculata_contig4540:452..14382 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4540.11405.1mRNA_H-paniculata_contig4540.11405.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4540 275..15186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4540.11405.1 ID=prot_H-paniculata_contig4540.11405.1|Name=mRNA_H-paniculata_contig4540.11405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=528bp
MLFLAGAPNRGPGAVSPTPHEVDWGDGGGSGEGDPDLHDYFFRGEPRALG
FYRGQAYRAASSGVSVDVHCFASKSCNHFGLSSIAPLAMTTGGGLFRHSL
LHQQEGEKRAAHIAREVQHELLQPRVYDGLLRIRTSSECCVNRNGVYGNL
SADPRLEDLWHVASCASAQAFSMDFEYRATGVAGLEVDNRDLVATVQSAF
AFTAVVPDTAAAARAQGRGQATNSNGDNDADTPLRMVTVRRLRVSTSRTA
SSSRVEEVAGMADPATVAGVLAHKVVSEARRSGFMEARALLRDWLSNFVY
GLARMLPIPDGANDSGNGGVGGAGEGDASRVLSHPRVVGMARLVFGLLQS
PLLHPTRGVPDERISLLSRLSALDPDSLSIVLYPEMQGYATPDVRMANNL
SLSRETVKSASSSCRVFVIDTFWRVIVHYVDTPETMAASAAAAGSGDAPL
SFPPPAHSAIGQYLAMRRSVRPMAGQEVVYSRPDTPEAFFFEEAMLEDRP
LPKSEKSQTFSEFFAELKRDALQEHIE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006900Sec23/24_helical_dom
IPR036465vWFA_dom_sf