mRNA_H-paniculata_contig4540.11405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4540.11405.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI) HSP 1 Score: 560 bits (1444), Expect = 9.400e-186 Identity = 341/597 (57.12%), Postives = 400/597 (67.00%), Query Frame = 1
Query: 1 RAVGLAVKLLLDLVLQAGPNVATAAAA--AAYSSSANPGRVGK-------WSPAVERS---RGFQIAGGRLMLFLAGAPNRGPGAVSPTPHEVDWGDGGGSGEGDPDLHDYFFRGEPRALGFYRGQAYRAASSGVSVDVHCFASKSCNHFGLSSIAPLAMTTGGGLFRHSLLHQQEGEKRAAHIAREVQHELLQPRVYDGLLRIRTSSECCVNRNGVYGNLSADPRLEDLWHVASCASAQAFSMDFEYRATGVAGLEVD---NRDLVATVQSAFAFTAVVPDTAAAXXXXXXXXXXXXXXXXXXXTPLRMVTVRRLRVSTSRTASSSRVEEVAGMADPATVAGVLAHKVVSEARRSGFMEARALLRDWLSNFVYGLARMLPIPDGANDSGNGGVGGAGEGDASRVLSHPRVVGMARLVFGLLQSPLLHPTRGVPDERISLLSRLSALDPDSLSIVLYPEMQGYATPDVRMANNLSLSRETVKSASSSCRVFVIDTFWRVIVHYVDTPETMAASAAAAGSGDAPLSFPPPAHSAIGQYLAMRRSVRPMAGQEVVYSRPDTPEAFFFEEAMLEDRPLPKSEKSQTFSEFFAELKRDALQ 1746
R GLAVKLLL+L+L A P A A A A A GRVG + A ER GF G RLMLFL GAP+RGPGA+ V G G + E + +H F G+PRALGFYRGQAYRAAS GVSVDVHCFA+K+C HFGLSS+APLAMTTGGG++RHSLLHQ+EGE RA +AREV ELLQPRV LR +S F+MDFE+R G G E+ ATVQSAFA+TAVVPD A+ RMVTVRRLRVST RT SS VE VA ADPATVA VLAHKVVSEARRSGF EAR LLRDWL+NF+ GLA L +G +S G GG + A ++++P +VG+AR VFGLLQSP+LHPT+G+ DER+SLLSRLS+LDP+SLSI LYPEMQGYATPD+R+AN+LSLSR+ V AS +CR+FV+DTFWRV+VHY D+P ++AA AA G+APL FPP SAIGQYL MRR+VRP+AGQEVVYSRP TPEAFFFEE +LEDRPLP++EK++TF FFAE+ RD LQ
Sbjct: 203 RVTGLAVKLLLNLLLGAAPGPAGAGATSTAGGGRDARDGRVGAPGRKTSTGASAAERGVGGGGFPFPGCRLMLFLGGAPDRGPGALGVVSPNVAGG-GKRNVETEGFVHHQLFPGKPRALGFYRGQAYRAASCGVSVDVHCFANKTCGHFGLSSLAPLAMTTGGGVYRHSLLHQREGENRAVTVAREVCAELLQPRV----LRRPLAS---------------------------------FAMDFEFRGAG-GGAELQWXXXXXASATVQSAFAYTAVVPDANASSEAASDNAINGGEAT----NAARMVTVRRLRVSTVRTDSSPSVEVVATAADPATVAAVLAHKVVSEARRSGFAEARGLLRDWLANFISGLAESLAASEGGRESAIPGGGGVEQAQA--LMANPLIVGVARQVFGLLQSPVLHPTKGIADERVSLLSRLSSLDPESLSIALYPEMQGYATPDIRLANSLSLSRQAVTEASPACRIFVVDTFWRVVVHYADSPASLAAGEAA---GEAPLPFPPSRDSAIGQYLEMRRAVRPLAGQEVVYSRPGTPEAFFFEETLLEDRPLPRAEKAETFKGFFAEIVRDVLQ 751
BLAST of mRNA_H-paniculata_contig4540.11405.1 vs. uniprot
Match: A0A061RZK4_9CHLO (Sec23 sec24 transport family protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZK4_9CHLO) HSP 1 Score: 120 bits (302), Expect = 2.490e-24 Identity = 115/391 (29.41%), Postives = 189/391 (48.34%), Query Frame = 1
Query: 310 EPRALGFYRGQAYRAASSGVSVDVHCFASKSCNHFGLSSIAPLAMTTGGGLFRHSLLHQQEGEKRAAHIAREVQHELLQPRVYDGLLRIRTSSECCVNRNGVYGNLSADPRLEDLWHVASCASAQAFSMDFEYRATGVAGLEVDNRDLVATVQSAFAFTAVVPDTAAAXXXXXXXXXXXXXXXXXXXTPLRMVTVRRLRVSTSRTASSSRVEEVAGMADPATVAGVLAHKVVSEARRSGFMEARALLRDWLSNFVYGLARMLPIPDGANDSGNGGVGGAGEGDASRVLSHPRVVGMARLVFGLLQSPLLHPTRGV----PDERISLLSRLSALDPDSLSIVLYPEMQGYATPDVRMANNLSLSRETVKSASSSCRVFVIDTFWRVIVHYVD 1470
+PR FY A AA+ G++VD++ +++ GL + PLA ++GG L + G + AA + ++V L + LR+RTS E V R +G+L D + E+L+HV SC + + DFE+ ++ AG +D+ D T+Q AF +TA++P A P + RR+R+ T + A + +++ AD V +L HKVV ++ G EAR LL+DWL + A+ + N G E D + P + + RLV+ +LQSPLL + PD R L + + L P L+ +YP + +++P+ SLSR + +AS +F++D+F +IV+Y +
Sbjct: 413 DPRCALFYADAAAAAAALGIAVDLYAISNEV---IGLECLEPLASSSGGQLCWYP------GPEGAA-LPQDVYRRLATHQARSCRLRLRTSPEFKVQRG--FGHLVEDQQYENLYHVVSCGAHDCVAFDFEFASS--AGF-LDHDDCPPTLQLAFQYTALLPHKPPAADQDSPQ------------APKWLRMERRMRIHTVQVAVARGPKDLYAYADTDAVLSLLMHKVVRASQEDGVEEARLLLQDWLVVLL------------AHYNANLYPGRIDEADMV-FEACPALQPLPRLVYVMLQSPLLANDQSRRQHHPDLRCFLQNLWALLPPADLARAVYPVLSSWSSPEQPAYPKHSLSRAALLAASEP--IFLLDSFTSLIVYYTE 761
BLAST of mRNA_H-paniculata_contig4540.11405.1 vs. uniprot
Match: A0A2P6VHB7_9CHLO (Transport sec24-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHB7_9CHLO) HSP 1 Score: 86.7 bits (213), Expect = 1.150e-13 Identity = 102/400 (25.50%), Postives = 160/400 (40.00%), Query Frame = 1
Query: 328 FYRGQAYRAASSGVSVDVHCFASKSCNHF-GLSSIAPLAMTTGGGLFRHSLLHQQEGEKRAAHIAREVQHELLQPRVYDGLLRIRTSSECCVNRNGVYGNLSADPRLEDLWHVASCASAQAFSMDFEYRATGVAGLEVDNRDLVATVQSAFAFTAVVPDTAAAXXXXXXXXXXXXXXXXXXXTPLRMVTVRRLRVSTSRTASSSRVEEVAGMADPATVAGVLAHKVVSEARRSGFMEARALLRDWLSNFVYGLARMLPIPDGANDSGNGGVGGAGEGDAS----RVLSHPRVVGMARLVFGLLQSPLLHPTRGV------------------PDERISLLSRLSALDPDSLSIVLYPEMQGYATPDVRMANNLSLSRETVKSASSSCRVFVIDTFWRVIV 1458
FY AA+ G+ VD+ +C H+ GL I PL +GG + + L AA + ++V + Q R LLR+R S E + G +G L AD DL+ + +C++ AFS D + + +A VQ ++ ++P R V RR+RV T+ + E++ D +A ++ HK ++ A G EAR ++ DWL+ A GG GE DAS + L H + L+F LL+SPLL PD L S L L PD LS+ + P++ +A P+ SLS + ++V+D+F +++V
Sbjct: 411 FYAEAGAAAAALGLVVDLFA----ACPHWLGLDLIEPLVSASGGIMTLYRSLD-------AAALPQDVYKSVAQLRALACLLRLRCSPE--LELQGPHGRLVADSEHPDLFRLPACSTQDAFSFDLDRSSAKLACA-------APAVQLVLQYSVLLPAAGEGGAPGDGS---------------RFVLQRRMRVLTAALPLAHTPEQLLAGCDAEALATLVVHKALATAAAQGPGEARKMVADWLALLAAAAAEARG-------------GGRGEADASLADVQALHH-----LPHLLFALLRSPLLQARASAAGGREGTAAGAVPAAWRHPDAAAVLRSLLRVLPPDELSVAVCPQLSSWAGPEEVAVMQHSLSEAALSVGEQP--LWVLDSFSQLVV 755 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4540.11405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4540.11405.1 >prot_H-paniculata_contig4540.11405.1 ID=prot_H-paniculata_contig4540.11405.1|Name=mRNA_H-paniculata_contig4540.11405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=528bp MLFLAGAPNRGPGAVSPTPHEVDWGDGGGSGEGDPDLHDYFFRGEPRALGback to top mRNA from alignment at H-paniculata_contig4540:275..15186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4540.11405.1 ID=mRNA_H-paniculata_contig4540.11405.1|Name=mRNA_H-paniculata_contig4540.11405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14912bp|location=Sequence derived from alignment at H-paniculata_contig4540:275..15186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4540:275..15186+ >mRNA_H-paniculata_contig4540.11405.1 ID=mRNA_H-paniculata_contig4540.11405.1|Name=mRNA_H-paniculata_contig4540.11405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3168bp|location=Sequence derived from alignment at H-paniculata_contig4540:275..15186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |