mRNA_H-paniculata_contig45361.11398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45361.11398.1
Unique NamemRNA_H-paniculata_contig45361.11398.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45361.11398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45361contigH-paniculata_contig45361:113..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.808096-CDS-H-paniculata_contig45361:112..3561622930360.808096-CDS-H-paniculata_contig45361:112..356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45361 113..356 -
1691481257.322294-CDS-H-paniculata_contig45361:112..3561691481257.322294-CDS-H-paniculata_contig45361:112..356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45361 113..356 -
1622930360.822506-CDS-H-paniculata_contig45361:446..6011622930360.822506-CDS-H-paniculata_contig45361:446..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45361 447..601 -
1691481257.33345-CDS-H-paniculata_contig45361:446..6011691481257.33345-CDS-H-paniculata_contig45361:446..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45361 447..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45361.11398.1prot_H-paniculata_contig45361.11398.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45361 113..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45361.11398.1

>prot_H-paniculata_contig45361.11398.1 ID=prot_H-paniculata_contig45361.11398.1|Name=mRNA_H-paniculata_contig45361.11398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MQGGRTASSNIKKTFDGNCSHCGKNGHRGEDCWDAKGDDQKKTKKNQSLC
WVGPKAMTAVTEDRKTTDSPALTRAKEHWNSDTGATDHMTSDETAFEDYT
PALPGTMCEIANGIFVPVEEWGRLVPRVRQPG*
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mRNA from alignment at H-paniculata_contig45361:113..601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45361.11398.1 ID=mRNA_H-paniculata_contig45361.11398.1|Name=mRNA_H-paniculata_contig45361.11398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig45361:113..601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGGGTCGAACGGCATCCTCGAACATCAAGAAAACGTTCGACGG
CAATTGCAGCCACTGCGGGAAAAATGGGCATCGCGGTGAGGATTGCTGGG
ACGCCAAAGGGGACGATCAAAAGAAAACGAAAAAGAATCAAAGCCTATGC
TGGGTGTGCGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGTCA
CCACGATACCAACGAAGGAGCAGTAGCGCTCCTGGCTACCATAAGAGGAC
CCAAGGCAATGACGGCCGTAACTGAAGATCGCAAAACAACAGATAGCCCT
GCCTTGACCAGAGCGAAGGAACACTGGAATTCAGACACCGGCGCGACAGA
CCACATGACCTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCC
CGGGGACCATGTGTGAAATCGCCAACGGAATATTCGTCCCTGTAGAGGAG
TGGGGACGCCTCGTGCCTCGAGTACGTCAACCGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45361:113..601-

>mRNA_H-paniculata_contig45361.11398.1 ID=mRNA_H-paniculata_contig45361.11398.1|Name=mRNA_H-paniculata_contig45361.11398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig45361:113..601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGGGTCGAACGGCATCCTCGAACATCAAGAAAACGTTCGACGG
CAATTGCAGCCACTGCGGGAAAAATGGGCATCGCGGTGAGGATTGCTGGG
ACGCCAAAGGGGACGATCAAAAGAAAACGAAAAAGAATCAAAGCCTATGC
TGGGTATGCAGGGGGGTCGAACGGCATCCTCGAACATCAAGAAAACGTTC
GACGGCAATTGCAGCCACTGCGGGAAAAATGGGCATCGCGGTGAGGATTG
CTGGGACGCCAAAGGGGACGATCAAAAGAAAACGAAAAAGAATCAAAGCC
TATGCTGGGTAGGACCCAAGGCAATGACGGCCGTAACTGAAGATCGCAAA
ACAACAGATAGCCCTGCCTTGACCAGAGCGAAGGAACACTGGAATTCAGA
CACCGGCGCGACAGACCACATGACCTCGGATGAGACTGCGTTCGAGGACT
ACACTCCAGCGCTCCCGGGGACCATGTGTGAAATCGCCAACGGAATATTC
GTCCCTGTAGAGGAGTGGGGACGCCTCGTGCCTCGAGTACGTCAACCGGG
GTAAAGGACCCAAGGCAATGACGGCCGTAACTGAAGATCGCAAAACAACA
GATAGCCCTGCCTTGACCAGAGCGAAGGAACACTGGAATTCAGACACCGG
CGCGACAGACCACATGACCTCGGATGAGACTGCGTTCGAGGACTACACTC
CAGCGCTCCCGGGGACCATGTGTGAAATCGCCAACGGAATATTCGTCCCT
GTAGAGGAGTGGGGACGCCTCGTGCCTCGAGTACGTCAACCGGGGTAA
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