mRNA_H-paniculata_contig4536.11397.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4536.11397.1
Unique NamemRNA_H-paniculata_contig4536.11397.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: D7FGW8_ECTSI (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW8_ECTSI)

HSP 1 Score: 476 bits (1225), Expect = 8.690e-155
Identity = 275/539 (51.02%), Postives = 343/539 (63.64%), Query Frame = 2
Query:  704 GDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQH------------CVSANPGLDNGEQSESRR---QESG-----FPAERRLDLFPLLPFLRVRGNKGDAGDGCRE----RPLPELVREELLHRFVTANTRGAVLPYAQLQILMRQVDGGGNKWSLSLGGGLTLRRLGDFLQVQPNDDVRESSSRVDVAGSSSLQLSLSEAAAAGSPHDGGEGGDGTGK---RERGMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALICDQKDDIVAVYPYFAGAEFNEDTTGTVPIRVRLEGAPIWCPHP 2239
            G ++LVLVSGGSDSVALL+AL  AA  FQP LRVEA HFNH LRG+DS AD+  V  +A SL + LHVRRWKG +EGGTGG GSGMQERAR+WR++EA++IL  +++++        G G G  G IATAHH+DDQ ET+LLKALRGAHIT +QGMAW + PF+RPLL A K++++DFL +    WRED SNQVAKY RNRVRLQL+PLL++LAG   ALDTR++ELSRQS  AR+MV+ +A  WE  H            C      +   +QS   R     SG      P+  R + FPL  FLR    KG  GDG  +      LPELVREELLHRF+  +          L+I     DGG       +  GL  R + +   V+ + D          A  +  ++ +S     GS   G EG  G G+    E GMVL+NV+ G +LHVRR++DGDRFRP WRDRP +LKDFLRGQGVPLHRRDEVALICD  D ++AVYP + G    +D+TG  PIRVR+ G P++CP P
Sbjct:   32 GKEVLVLVSGGSDSVALLLALERAAKTFQPPLRVEAAHFNHGLRGKDSDADQDLVVKMADSLRVPLHVRRWKGPEEGGTGGPGSGMQERARRWRRAEAKDILAKSMTEA--------GAGRGGRGVIATAHHKDDQTETVLLKALRGAHITNIQGMAWHSDPFVRPLLGAHKTELLDFLVRGRHAWREDGSNQVAKYARNRVRLQLIPLLRELAGGTKALDTRVEELSRQSHFARQMVEREALRWERAHLSGCRFDDEAGGCRDETDQVGGADQSAGTRGTVDRSGGVGDVAPSGIRREEFPLQAFLR----KGPGGDGSEQGWAGSDLPELVREELLHRFIVGDL---------LRIEQSPADGG------IMVSGLEGRTVSEQGIVRHSTD----------AAITPWEMVVSPWGEGGSVGLGEEGDSGHGEGRATEAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDAVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRP 533          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A6H5JFL6_9PHAE (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL6_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.940e-106
Identity = 197/403 (48.88%), Postives = 250/403 (62.03%), Query Frame = 2
Query: 1169 MAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLDNGEQSESRRQESGF--------------------PAERRLDLFPLLPFLRVRGNKGDAGDGCRE----RPLPELVREELLHRFVTANTRGAVLPYAQLQILMRQVDGGGNKWSLSLGGGLTLRRLGDFLQVQ--PNDD-----------------VRESSSRVDVAGSSSLQLSLSEAAAAGSPHDGGEGGDGTGK---RERGMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALICDQKDDIVAVYPYFAGAEFNEDTTGTVPIRVRLEGAPIWCPHP 2239
            MAW + PF+RPLL A KS++++FL + G  WRED SNQVAKY RNRVRLQL+PLL++LAG   ALDTR++ELSRQS  AR+MV+ +A +WE +H        + G  S+   Q  G                     P+  R   FPL  FLR    KG  G+G  +      LPELVREELLHRF+ ANT  + L YA L++LMRQVDGG  KWS+SL GG  LRR+GD L+++  P D                  VR S+     A ++  ++ +S     GS   GGEG  G G+    E GMVL+NV+ G +LHVRR++DGDRF+P WRDRP +LKDFLRGQGVPLHRRDEVALICD  D ++AVYP + G    +D+TG  PIRVR+ G P++CP P
Sbjct:    1 MAWHSDPFVRPLLGAHKSELLEFLVRGGHAWREDGSNQVAKYARNRVRLQLIPLLRELAGGAKALDTRVEELSRQSHFARQMVEREALHWEREHLSGCRFDDEGGGCSDETDQVGGSDQSAGAGGTVDRSEGVGDVAPSGIRRKEFPLQAFLR----KGPGGEGSEQGWAGSDLPELVREELLHRFIVANTGNSPLSYANLRLLMRQVDGGDRKWSISLEGGYYLRRVGDLLRIEQSPADGGIIVSGLEGRVVSEQGIVRHSTD----AATTPWEMVVSPWGEGGSIALGGEGDSGHGEGRATEAGMVLFNVAAGARLHVRRKKDGDRFQPAWRDRPAKLKDFLRGQGVPLHRRDEVALICDHHDSVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRP 395          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A4D9DAX5_9STRA (tRNA(Ile)-lysidine synthetase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAX5_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.050e-76
Identity = 203/584 (34.76%), Postives = 286/584 (48.97%), Query Frame = 2
Query:  653 LVQQVAVALEERC------GVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERARKWRQSEARNILQGT-------LSQSKVGSACGDG--RGDGNS-----GFIATAHHRDDQAETILLKALRGAHITKMQGMAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLDNGEQSESRRQESGFPAERRLDLFPLLPFLRVRGNKGDAGDGCRER---------PLPELVREELLHRFVTANTRGAV-LPYAQLQILMRQVDG------GGNK----WSLSLGGGLTLRRLGDFLQV--------------QPNDDVRESSSRVDVAGSSSLQLSLSEAAAAGSPHDGGEGGDGTGKRERGMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALIC-------DQKDDIVAVYPYFAGAEFNEDTTGT----VPIRVRL 2209
            L+ QV  +L+  C      G      +++ VSGG+DS+ALL  L      ++P L++   HFNH LR E +Q +E FV + A  LG+ +H   W+  +   +    +G+Q RAR+WR+ E   +LQ           + K G A G+   RGDG+      G IATAHH DD  ET +LK LRGAHI+ ++GM   AG +++PLL   K+ +V FL++ G  W EDASNQ  KY RN+VRL+L+PL+ +LAG   AL  R++E++ QS+   E V   A  WE +H   A   + +            FP    L                                  PLP L++EELLHR V   + GAV L YAQ++  M Q+        GG+K    W L +G G  L R G  L++              Q N  V    + V+    +  Q+S S  +A  SP        G       MVL +V  G +L +R R++GDRF P WR  P +LKDFLR Q VPLHRRDEV LI          K++++ ++P    A  + D+  T     P+ +RL
Sbjct:   89 LLDQVEASLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAAQ-EEAFVLDAASRLGVPVHTASWQEEERSKS----AGVQARARQWRRQECERLLQEERISGRWQTGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEARAGAYVKPLLHLPKTRLVRFLEREGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEEWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRFPLPSALSSSSXXXXXXXXXXXXXXXXXXXXXFSASEPLWAPLPRLLQEELLHRLVARASNGAVSLSYAQIRRAMEQLQRDEEEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGNWQQENFPVSLPDAGVECLLPTGWQISASRLSA--SPSSSSSSAPGWS-----MVLPHVPMGARLRLRNRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLIVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRL 660          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A0M0JCJ3_9EUKA (tRNA(Ile)-lysidine synthetase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCJ3_9EUKA)

HSP 1 Score: 244 bits (623), Expect = 5.650e-67
Identity = 187/534 (35.02%), Postives = 257/534 (48.13%), Query Frame = 2
Query:  689 CGVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCV-----SANPGLDNGEQSESRRQESGFPAERRLDLFPLLPFLRVRGNKGDAGDGCR-ERPLPELVREELL---------------HRFVTANTRGAVLPYAQLQILMRQVDGGGNKWSLSLGGGLTLRRLGDFLQVQPNDDVR---ESSSRVDVAGSSSLQLS----------------------LSEAAAAGSPHDGGEGG---DGTGKRERGMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALICDQ-KDDIVAV 2140
            CG+  G  +L+ VSGGSDSVALL  L+      Q  L   AVHFNH  R E S+ +E FV +LA   G+ +HVRR   AD        +G+QER R WR++E+  IL    +  + GS    G  +   G +   HH DDQ ETI+LK LRG H++ + GM W  GPF+RPLL  RKS++V +L+  GQ WREDASN V KY RNRVRLQL+PLL++L G  G L  R+  L +QS   RE +   +    H H       S + G      +  R+Q      E    +  LL    V   +  A D    E   P  + +E+                 R    ++ G  +PYAQL  L  Q++    +W+L L G   ++R+GD L V P    R   E+++  +     S+ L                       ++EA A  +    G  G   D        + L++V P   L +R  R GDRF P WR+ P  L +FLRGQ V L RR    L+C     +++AV
Sbjct:    2 CGLGAGAPVLISVSGGSDSVALLRVLVELNSQLQWDLA--AVHFNHGFRRE-SEEEEVFVRSLAAEHGVPMHVRRLAEADRA----LANGVQERTRAWRRTESLAILSSLDAAPEHGS----GGREQPRGAVMLGHHADDQLETIVLKGLRGCHLSNLHGMRWQDGPFVRPLLGQRKSELVAYLRALGQEWREDASNAVPKYKRNRVRLQLLPLLEELTG--GGLHARIGVLEQQSAQLREWLHQAS----HAHLTADPFWSTSAGARGLSVARLRQQVPMVQDE----VLHLLVRDGVEAAESSAADASELEMESPSEIGDEIESVEGAEGARVVAGAPERPSEGSSDGYSVPYAQLVRLRTQLERPSTEWTLDLAGCCIVQRVGDLLTVAPTRPARRPAETTTEDEETLRGSVALDGVTVRFPVGWDVRVRWAEDGGGVAEAHATSAEAAAGAAGAIPDDAAAMHEVITLHSVPPDAVLELRTPRPGDRFHPLWREAPIGLTNFLRGQRVALERRRATPLVCQAGSQEVLAV 514          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A835Z1B5_9STRA (tRNA(Ile)-lysidine synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B5_9STRA)

HSP 1 Score: 243 bits (620), Expect = 6.430e-65
Identity = 219/697 (31.42%), Postives = 288/697 (41.32%), Query Frame = 2
Query:  653 LVQQVAVALEERCGVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRW-----------KGADEGGTGGAGS---------------------------------GMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAWVAG----------------------------PFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLDNGEQSESRRQESGF--PAERRLDLFPLLPFLRVRGNKGDAGDGCRERPLPELVREELLHRFVTAN--------------TRGAVLPYAQLQILMRQVDGGGN-KWSLSLGGGLTLRRLGDFLQ-----------------------------------VQPNDDVRESSSRVDVAGS-----SSLQLSLSEAAA-AGSPHDGGEGGD----GTGKRERGMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALI------------------------------------------CDQKDDIVAVYPYFAGAEFNEDTTGTVPIRVRLEG 2215
            L QQ   AL ERCGV  GD ILVL SGG+DS ALL  + +      P L +    F+H LR E  +  E FV   A++LGI  + RRW           KG +      A +                                 G+Q+RAR WR +EA  +L    S + V +   DG    +S F+ATAHH+ DQ ET+LLK  RGAH+T+++GMAW +                               +RPLL ARK+ + ++L++ G  W ED SN  AK                +AG   AL  RL EL RQS L  +MV++ AE WE QH  SA      G +  +    +    P +     FPL P+        DA        LP LV+EELLHRFV                   G  L  AQ   L       G+ +W + +GGG  + R GD L+                                   V     V E+ +R  +        ++ ++ ++EAA  A +  DG  G D            MVLYNV PG  L VRRRRDGDRFRP+WR  P ++KDFLRGQGVPLHRRD+VAL+                                               ++V VYP  A     ED TG  P+ +R+ G
Sbjct:   73 LEQQTWEALTERCGVRPGDTILVLCSGGADSTALLHIMAAIRHKTSPSLELATATFDHCLRPEAKEEVE-FVQIQARALGISCYTRRWSEHPSWLGKDAKGQENHSVEAAEAVLPAWCLPCAAALILHVLRASVTHACNGCLRAVGIQQRARAWRLAEAAALLAELSSHTTVTAPAEDGLA--SSSFVATAHHQGDQEETLLLKLARGAHVTRLRGMAWSSALSVEDGASQHRSGAGARGGDGGADALPCSVVRPLLGARKAQLEEYLRRRGVQWLEDPSNATAKR---------------IAGGEAALAARLTELERQSALVADMVRAAAEAWEAQHLPSA------GARGVAPPDANALWGPGD-----FPLPPWA-------DAA-------LPALVQEELLHRFVARGGPARAALAPGLPPRVPGVTLGGAQTAHLAAMARAAGSARWHVDVGGGAAVMRDGDVLRLAHAMGAAXXXXXXXXXXXXXXXXXXXXGERTAGCVAGEVTVDEAEARCTITAPPDWEVTATRIGVAEAAGIAAAARDGTSGADRPPAXXXXXXSDMVLYNVPPGAVLRVRRRRDGDRFRPRWRATPAKVKDFLRGQGVPLHRRDDVALVQLSPPPPLPLDGAAGGAHGXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVVGVYPGHASGAVCEDVTGWPPLLLRVRG 726          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A6V1QY00_HETAK (tRNA(Ile)-lysidine synthetase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QY00_HETAK)

HSP 1 Score: 239 bits (609), Expect = 8.430e-65
Identity = 172/551 (31.22%), Postives = 276/551 (50.09%), Query Frame = 2
Query:  647 EPLVQQVAVALEERCGV--HGGDQILVLVSGGSDSVAL--LVALLSAAPFF---QPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGS-GMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAWVA-GPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLDNGEQSESRRQESGFPAERRLDLFPLLPFLRVRGNKGDAGDGCRERPLPELVREELLHRFVTANTRGAVLPYAQLQILMRQVDGGGNKWSLSLGGGLTLRRLGDFLQV------QPNDDVRESSSRVDVAGSSSL--------QLSLSEAAAAGSPHDGGEGGDGTGKRER------GMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALICDQKDDIVAVYPY-FAGAEFNEDTTGTVPIRVRL 2209
            E L+Q+V   L   CG+  +G + +++ VSGGSDS+AL  L+  ++        +    +E +HFNH LRG++S  +  FV        +  ++R W   +E     + + G+Q R+RKWR+ EA ++LQ    Q  + S   D R       I TAHH +DQ ET++L+ LRGAH++ +QGM   + G +I+PLL   K D+V FL++ G  WRED+SN++ KY RN+VRL ++P L+DLAG   A   R++EL+ QS+L  E +  +   W  Q+  S                    P++    L PL  F  V                  L++ E+L++F+T  T G+ L + QLQ +   V+   N WS+ LG    L++ G+ L +       P   + +S  +    G +++         L  + +     P         + K  +       +V +N+    KL +R R+ GD+F+  W  +  +LKDFLRGQ V LH RD + L+C   D+++AV P     + +++D TG   IR+ +
Sbjct:   80 EKLLQKVQDTLAGSCGLQFNGNECLILCVSGGSDSIALAELINRINKKTKIMDGRSAFSLEVLHFNHKLRGKESDNEAIFVEKFCSQREMSFNLREWTENEELNRKASKTIGIQARSRKWRRQEALHVLQAIAHQKSLPSQ--DIR-------IVTAHHSEDQEETVILQLLRGAHLSGLQGMKSTSFGQYIKPLLNVSKQDLVSFLERNGIEWREDSSNKLRKYKRNQVRLDILPQLRDLAGGSAAFRLRIEELAHQSQLLEEHLNIEVTRWNEQYRDSV-------------------PSQ----LLPLSNFNIVS----------------PLLQNEILYQFITRQT-GSELSFQQLQRIYDMVNSENNIWSIDLGSNWILQQKGEMLMLLLAGDSHPGSLLDDSKPKTHCVGETTIFSYVDQHWALEENSSGWVKDPRSSAFYNSPSAKNNKDFPKIHSVVCFNIQNQQKLEIRFRKAGDKFQAPWLPKDQKLKDFLRGQKVQLHERDLLPLLC-LGDEVIAVIPLGIVSSSYHKDMTGFPAIRITM 580          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A8J5XS81_DIALT (tRNA(Ile)-lysidine synthetase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XS81_DIALT)

HSP 1 Score: 239 bits (610), Expect = 1.280e-63
Identity = 190/563 (33.75%), Postives = 261/563 (46.36%), Query Frame = 2
Query:  674 ALEERCGVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLD--NGEQSESRRQESGFPAERRLDLFPLL-PFLRVRGNKGDAG----------DGCRERPLPELVREELLHRFVTANTRGAVLPYAQLQILMRQVDGGGNKWSLSLGGGLTLRRLGDFLQVQPNDDVRESSSRVDVAGSSSLQLSLSEAAAAGSPHDGGEGGDGTGKRERG--------------MVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALIC--DQKDD-------------------IVAVYPYFAGAEFNEDTTGTVPIRVRLEGA 2218
            +L+  C V  G  +L LVSGG DSVALL  L  A P     L V  +HFNH  R E   ++E FV +LA+      HVRR +   E       SG+Q   R WR++E+  +L     ++             +   IA  HH DD  ETILLK LRG H+T++ GM    GPF+RPLL   K  +  +L+  G  WRED+SN   KY RNR+RL+L+PLLQ L G   AL  RL++L  Q + ARE++              A+ G+D   GE ++    E    A+               R + GD            D  +   LP  V+ E +HRFV   + G    YA+++  + ++     +  L L GG  LRR G+   V P++     + R    G  +L+     AAAAGS        D       G              + LYNV PG++L VR RR+GD F P WR+RP +LKDFLRGQ VPLH R++V LI   +++ D                   ++AVYP   G     D     P+  +   A
Sbjct:   80 SLQAECSVGHGATVLALVSGGRDSVALLHLLARAQPALGFALHV--LHFNHQTRAE-CDSEEAFVRDLAERHNAAFHVRRLERVPE-------SGLQAHTRAWRRTESTALLARLAGETA------------SDAVIALGHHADDDVETILLKWLRGCHVTRLAGMRARDGPFVRPLLGVGKEALTRWLEAGGLEWREDSSNATPKYKRNRIRLELVPLLQQLTG--DALGVRLNDLVEQGREARELL-------------DAHLGVDAAGGEAADGGAHEGEAIADEPAGAVRTARAAAHARSHAGDVAFSMAALHVSLDVPQLLALPRAVQTEAIHRFVLRRS-GRASTYAEVRRALDRLRSPNAQSDLHLAGGWLLRRNGNKALVLPSNGALGLAPR----GRGALETGA-WAAAAGSAVCVAHAADCVVNVREGEEVHETDETDDAPTITLYNVPPGSRLRVRARREGDTFTPAWRERPVKLKDFLRGQKVPLHARNDVRLIAWDEERTDGTNGQPIGAGRADASTSPTVLAVYPTHVGRACAHDEGVHPPLSAKANAA 599          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A7S3SRF0_EMIHU (tRNA(Ile)-lysidine synthetase n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SRF0_EMIHU)

HSP 1 Score: 221 bits (563), Expect = 1.030e-58
Identity = 190/548 (34.67%), Postives = 262/548 (47.81%), Query Frame = 2
Query:  647 EPLVQQVAVALEERCGVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRR----WKGADEGGTGGAGSGMQERARKWRQSEARNILQ--GTLSQSKVGSACGDGRGD-GNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLDNGEQSESRRQESGFPAERRLDLFPLLPFLRVRGNKGDAGDGCRERPLPELVREELLHRFVTANTRGAV-LPYAQLQILMRQVDGGGNKWSLSLGGGLTLRRLGDFLQV--------QPNDD--VRESSSRVDVAGSSSLQLSLSEAAAAGSPHDGGEGG------------DGTGKRERGMV--------LYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALIC-DQKDDIVAVY-PYFAGAEFN 2170
            E L+ +V  AL    G   G +++V VSGG DSVALL  LL+  P ++  LR+  +HFNH LR E    +E FV  LA+   + +HVRR    W+ +  GG       +QER+R+WR++E+  +L         +  SA  D   + G +  +A AHH DDQAET+LLKALRG H++ ++GM W AG F+RPLL  RK ++  +L   G+GWREDA+N    Y RNR+RLQL+PLL++L G  G L  RL   S QS   RE +  QA    H   V+A+P              SG  A   L + PLL                       +V+EELLHR     + G + L    L+ +  Q+   G +W L L GG  LRR G  + +        +P +   V  ++S  D      +Q S++E A        GE G             G  +  R  +        L  +    +L +R  R GDRF P+ R  P  L  FLRG  VPL  R    L+C      +VAV  P   G+ F 
Sbjct:   47 ELLLPRVHTALSRDIGATPGQRLVVSVSGGCDSVALLHLLLALQPRWR--LRLHVLHFNHGLRPESGD-EEAFVHALAERHSLPVHVRRLPAGWRESQPGG-------IQERSREWRRAESLALLDELDAAGPPQFSSADADFADEPGAASLVALAHHADDQAETVLLKALRGCHLSNLRGMEWRAGRFVRPLLGVRKEELSAYLGALGEGWREDATNAEPTYKRNRIRLQLLPLLEELTG--GGLLARLGAASEQSAQLREWL-DQA----HAAHVAADPAW----------ARSGGRA---LSVAPLLA-------------------AQTMVQEELLHRLARGASVGRLSLTRDALRRVRAQLARSGQEWVLELSGGWLLRRTGATVSIAGAEVAAAEPAEKGHVPLTASERDTTA---VQASVAELAV-------GEAGVRLRHPAELAVRAGVARGPRAELPPGALALRLGGLGSERELTLREWRRGDRFHPQGRRAPVSLSHFLRGLDVPLDERRRAPLLCLPNSSTVVAVCRPAHVGSGFE 535          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: L1J2C7_GUITC (tRNA(Ile)-lysidine synthetase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J2C7_GUITC)

HSP 1 Score: 216 bits (549), Expect = 1.210e-56
Identity = 166/509 (32.61%), Postives = 250/509 (49.12%), Query Frame = 2
Query:  638 TELEPLVQQVAVALEERCGVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPH-------LRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQGMAW---VAGPFIRPLLEARKSDIVDFLQQTGQGWREDASNQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQAEYWEHQHCVSANPGLDNGEQSESRRQESGFPAERRLDLFPLLPFLRVRGNKGDAGDGCRERPLPELVREELLHRFVTANTRGAVLPYAQLQILMRQVDGGGNK--WSLSLGGGLTLRRLGDFLQVQPNDDVRESSSRVDVAGSSSLQLSL----SEAAAAGS-PHDGGEGGDGTGKRERGMVLYNVSPGTKLHVRRRRDGDRFRPKWRDRPTRLKDFLRGQGVPLHRRDEVALIC 2113
            +++ PL ++V   LE RCG+     ++V VSGGSDS AL++ L       Q H       L +  VHF+H LR E S+ +  FV  LA+  G+  +++    AD         GMQE  R WR+     +      QS+  +            ++ +AHH DDQ ETIL+K LRGAHI+K+ GM +   +  P +RPLL+  K ++V +L+   Q WRED+SN  + Y RN+VR+QL+PLLQDL G   AL +R++ LS QS   ++ ++               P +  G + + R      P    LD F    +   R                EL+R  ++H+F+++     +L Y QL  + +Q++   N   WSL LG G  + R G  L V   +    + S VD+ G  ++ + +    S    AG  P    EG       +    ++NV  G+++ VR +  GDRF PK   +  RLK FLR Q +P+  RDE+ LIC
Sbjct:   65 SKISPLGRKVMQTLEGRCGMQLPASLVVGVSGGSDSTALMLLLDEVR---QEHEGGEEGQLSINVVHFDHGLRAE-SKEEAKFVEGLARDRGMPFYMQALDEADAARFRENSGGMQEYTRIWRRKVMGEVAAKIKEQSRPDTKV----------YLVSAHHSDDQLETILMKLLRGAHISKLHGMKYKDDLDPPMLRPLLDISKQELVRYLKDLQQDWREDSSNHESTYKRNKVRIQLIPLLQDLCGGKHALASRMNGLSHQSMQLQQWMEE------------VTPAIKFGRRFDKRT----LP----LDFF----YAESR----------------ELLRNSVIHQFISSEASDLILSYTQLLKIAQQLEEHPNNLNWSLDLGKGWQVLRSGPLLMVDREEGELPNGS-VDILGDVNVGVEVDGPWSVMVTAGQKPPPPVEGKRRVLPEDVCFTIHNVPAGSQMIVRTKLAGDRFFPKGVGKDERLKHFLRFQRIPVKERDEIPLIC 518          
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Match: A0A6H5JEI5_9PHAE (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI5_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.710e-51
Identity = 116/243 (47.74%), Postives = 144/243 (59.26%), Query Frame = 2
Query:  608 ETIGRNFECLTELEPLVQQVAVALEERCGVHGGD---------------------------------------------------------QILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNHALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERARKWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETILLKALRGAHITKMQ 1165
            E +G +    +E+EPLV++VA ALE+RC V GGD                                                         Q+LVLVSGGSDSVALL+AL  AA  FQP LRVEA HFNH LRG+DS AD+  V  +A SL + LHVRRW+G +EGGTGG GSGMQERAR+WR++EA++IL  +++++        G G G  G IATAHH+DDQAET+LLKALRGAHIT +Q
Sbjct:  221 EDLGTSIAGGSEMEPLVERVASALEQRCSVCGGDLVRVFRSVCVIGRNGVGILVIARVSVWVFRGHSSVHPVLDKCPDREPNQLQAPACYFQVLVLVSGGSDSVALLLALERAAKTFQPPLRVEAAHFNHGLRGKDSDADQDLVVKMADSLRVPLHVRRWRGPEEGGTGGPGSGMQERARRWRRAEAKDILAKSMAEA--------GAGRGWRGVIATAHHKDDQAETVLLKALRGAHITNIQ 455          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4536.11397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGW8_ECTSI8.690e-15551.02tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]
A0A6H5JFL6_9PHAE1.940e-10648.88tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]
A0A4D9DAX5_9STRA1.050e-7634.76tRNA(Ile)-lysidine synthetase n=4 Tax=Monodopsidac... [more]
A0A0M0JCJ3_9EUKA5.650e-6735.02tRNA(Ile)-lysidine synthetase n=1 Tax=Chrysochromu... [more]
A0A835Z1B5_9STRA6.430e-6531.42tRNA(Ile)-lysidine synthetase n=1 Tax=Tribonema mi... [more]
A0A6V1QY00_HETAK8.430e-6531.22tRNA(Ile)-lysidine synthetase n=1 Tax=Heterosigma ... [more]
A0A8J5XS81_DIALT1.280e-6333.75tRNA(Ile)-lysidine synthetase n=1 Tax=Diacronema l... [more]
A0A7S3SRF0_EMIHU1.030e-5834.67tRNA(Ile)-lysidine synthetase n=4 Tax=Emiliania hu... [more]
L1J2C7_GUITC1.210e-5632.61tRNA(Ile)-lysidine synthetase n=1 Tax=Guillardia t... [more]
A0A6H5JEI5_9PHAE2.710e-5147.74tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4536contigH-paniculata_contig4536:6315..12329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue1.9e-45
Seed eggNOG ortholog159749.K0RP98
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PP-loop family
EggNOG OGs2T6QC@2759,2XFN2@2836,COG0037@1
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons9
Model size2846
Cds size2235
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.5828009-UTR-H-paniculata_contig4536:6314..68491622930360.5828009-UTR-H-paniculata_contig4536:6314..6849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 6315..6849 -
1691481257.2237093-UTR-H-paniculata_contig4536:6314..68491691481257.2237093-UTR-H-paniculata_contig4536:6314..6849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 6315..6849 -
1622930360.7622936-UTR-H-paniculata_contig4536:12253..123291622930360.7622936-UTR-H-paniculata_contig4536:12253..12329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 12254..12329 -
1691481257.3111563-UTR-H-paniculata_contig4536:12253..123291691481257.3111563-UTR-H-paniculata_contig4536:12253..12329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 12254..12329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.6007268-CDS-H-paniculata_contig4536:6849..70321622930360.6007268-CDS-H-paniculata_contig4536:6849..7032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 6850..7032 -
1691481257.233242-CDS-H-paniculata_contig4536:6849..70321691481257.233242-CDS-H-paniculata_contig4536:6849..7032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 6850..7032 -
1622930360.6140947-CDS-H-paniculata_contig4536:7422..75581622930360.6140947-CDS-H-paniculata_contig4536:7422..7558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 7423..7558 -
1691481257.2407815-CDS-H-paniculata_contig4536:7422..75581691481257.2407815-CDS-H-paniculata_contig4536:7422..7558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 7423..7558 -
1622930360.6278408-CDS-H-paniculata_contig4536:7866..80771622930360.6278408-CDS-H-paniculata_contig4536:7866..8077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 7867..8077 -
1691481257.2484052-CDS-H-paniculata_contig4536:7866..80771691481257.2484052-CDS-H-paniculata_contig4536:7866..8077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 7867..8077 -
1622930360.6463096-CDS-H-paniculata_contig4536:8463..85831622930360.6463096-CDS-H-paniculata_contig4536:8463..8583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 8464..8583 -
1691481257.2561269-CDS-H-paniculata_contig4536:8463..85831691481257.2561269-CDS-H-paniculata_contig4536:8463..8583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 8464..8583 -
1622930360.6646953-CDS-H-paniculata_contig4536:9164..95141622930360.6646953-CDS-H-paniculata_contig4536:9164..9514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 9165..9514 -
1691481257.2717369-CDS-H-paniculata_contig4536:9164..95141691481257.2717369-CDS-H-paniculata_contig4536:9164..9514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 9165..9514 -
1622930360.6900642-CDS-H-paniculata_contig4536:9704..98501622930360.6900642-CDS-H-paniculata_contig4536:9704..9850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 9705..9850 -
1691481257.2795348-CDS-H-paniculata_contig4536:9704..98501691481257.2795348-CDS-H-paniculata_contig4536:9704..9850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 9705..9850 -
1622930360.7117238-CDS-H-paniculata_contig4536:10350..108031622930360.7117238-CDS-H-paniculata_contig4536:10350..10803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 10351..10803 -
1691481257.2874691-CDS-H-paniculata_contig4536:10350..108031691481257.2874691-CDS-H-paniculata_contig4536:10350..10803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 10351..10803 -
1622930360.7281268-CDS-H-paniculata_contig4536:11145..116791622930360.7281268-CDS-H-paniculata_contig4536:11145..11679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 11146..11679 -
1691481257.2949867-CDS-H-paniculata_contig4536:11145..116791691481257.2949867-CDS-H-paniculata_contig4536:11145..11679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 11146..11679 -
1622930360.7462947-CDS-H-paniculata_contig4536:12151..122531622930360.7462947-CDS-H-paniculata_contig4536:12151..12253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 12152..12253 -
1691481257.3028412-CDS-H-paniculata_contig4536:12151..122531691481257.3028412-CDS-H-paniculata_contig4536:12151..12253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 12152..12253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4536.11397.1prot_H-paniculata_contig4536.11397.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4536 6850..12253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4536.11397.1

>prot_H-paniculata_contig4536.11397.1 ID=prot_H-paniculata_contig4536.11397.1|Name=mRNA_H-paniculata_contig4536.11397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=745bp
MREASFAPGSASLCSDIKCLLVMSWITINAVGSKANLRTGLSPAFGTLCQ
QTVRSTRTCDTYRNLRHTAQSPSTAWTDRQSCHFFKSIITSVGSSCSGCT
WSAQQRLRQSRRWALAESVHGSPGECGNTFQPQDHNVATVDGNVDLSHHP
HADKTERREDVTATTLPQDETKRSGSSETIGRNFECLTELEPLVQQVAVA
LEERCGVHGGDQILVLVSGGSDSVALLVALLSAAPFFQPHLRVEAVHFNH
ALRGEDSQADETFVSNLAQSLGIKLHVRRWKGADEGGTGGAGSGMQERAR
KWRQSEARNILQGTLSQSKVGSACGDGRGDGNSGFIATAHHRDDQAETIL
LKALRGAHITKMQGMAWVAGPFIRPLLEARKSDIVDFLQQTGQGWREDAS
NQVAKYTRNRVRLQLMPLLQDLAGCVGALDTRLDELSRQSKLAREMVQSQ
AEYWEHQHCVSANPGLDNGEQSESRRQESGFPAERRLDLFPLLPFLRVRG
NKGDAGDGCRERPLPELVREELLHRFVTANTRGAVLPYAQLQILMRQVDG
GGNKWSLSLGGGLTLRRLGDFLQVQPNDDVRESSSRVDVAGSSSLQLSLS
EAAAAGSPHDGGEGGDGTGKRERGMVLYNVSPGTKLHVRRRRDGDRFRPK
WRDRPTRLKDFLRGQGVPLHRRDEVALICDQKDDIVAVYPYFAGAEFNED
TTGTVPIRVRLEGAPIWCPHPGRDVQGGREHDFGGYVNEDGSCM*
back to top

mRNA from alignment at H-paniculata_contig4536:6315..12329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4536.11397.1 ID=mRNA_H-paniculata_contig4536.11397.1|Name=mRNA_H-paniculata_contig4536.11397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6015bp|location=Sequence derived from alignment at H-paniculata_contig4536:6315..12329- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGGGTGCTAAAAAACATACAAGTGCTCAAGTTGCAAACTGTTTTTT GTTTTCAGTTGCTTCGATTGGTGGAGATGAGAGAGGCATCCTTTGCGCCA GGCAGTGCGTCTCTATGCTCGGATATTAAGTGCTTGTTGGTGATGTCCTG GATAACGATTAATGCTGTAGGAAGCAAGGTGCGAGGACAAAACGTTTCGT GTTGTGCGTAGTCGTTTCAACATATCAATATGGTAAGCTGAAAAATCGGT ATAGAGGGGCACTAAATGCAGCAGCAGCAGCTGTCAGCAGCCGGCAGCCG GATAAATTTTAGCAAGTTTCTAATGATGACTTAAAAAAATTATTCCCTGT ATCCTTCCCAAAAGTGCAGCAAGATCTATCTTGAGTCCAATTGAGTCCAA TTGGGTTAGTCGGGTCCTGGTTGGGAACGTAAACAGAGCGCAGAGTATGC GGTGCAACCTCTTTTTCACGAAACTTGAAACGCTCACAACCGCACTTTTC GACCTCGAACAGACACACACCAGACATAGGACCTGAGACAGTGAGGGTGG TGGGTGCTCATTTCGTTACTAGTTTGGCCTGTCGTACCTTTCATTTTTCG CCTTTTGCTCGTTGTTACGGTTCCCACTGTTGGTTGTTCACGGTCAAAAG GCGAACCTGCGGACCGGCTTAAGTCCTGCTTTCGGTACCTTGTGTCAACA AACAGTTAGGAGCACGAGAACATGCGACACCTACCGAAATCTGAGGCATA CGGCCCAGTCGCCTTCTACTGCTTGGACTGATCGGCAATCGTGTCATTTC TTCAAGAGCATAATCACTTCGGTGGGATCGTCATGCAGTGGTTGCACATG GTCAGCACAACAGCGACTGCGGCAGTCGAGGCGCTGGGCTCTTGCTGAGT CTGTGCACGGTTCGCCTGGAGAATGCGGCAACACTTTCCAGCCGCAAGAC CACAATGTTGCTACCGTTGACGGCAATGTTGATCTCTCCCATCATCCTCA TGCCGATAAGACGGAGCGCAGAGAAGATGTGACGGCAACAACGTTACCTC AAGATGAAACAAAGAGAAGCGGTAGCAGTGAAACCATTGGTCGGAATTTT GAGTGCTTGACCGAACTGGAACCTCTTGTGCAGCAGGTGGCCGTGGCTTT GGAAGAGCGTTGTGGCGTGCATGGTGGAGATCAGGTAAGCCGGGGCCACC CGTGTTATAACACTCAAGAAGAAACAGGTTCTATGTACTACGTTCCTCGT CGTACATCAAATTTGAATGCAATCATTTGCACTTGTCGTTTGTCCGATCC GGTATATGAATGAGAGCACAGCCTTGAGGCGTGCTGAAAATATCAACTAC ATCACACGACTGGCGTCAGTACTCGAAGCGGTGTTATCCAGACTCTTATG CACCCTTCACTTTTTCAATTTGAGTCGCAGTGATGTTGAAACGAATGTTC GTTCGACCGCCCGTAAGAACTTCTTTTTTCCCTTCTCTACCCACCCCCTA TCCCCTCCCTCGTTCGGCATAGGCAGATCCTTGTGCTCGTTAGTGGAGGA AGTGACTCCGTAGCTCTCCTCGTCGCCCTTCTCAGTGCCGCGCCGTTTTT TCAGCCTCACCTCCGCGTGGAAGCGGTGCACTTCAACCATGCCTTGCGAG GCGAAGACTCTCAAGCCGATGAAACGTTTGTCTCCAACTTGGCGCAAAGC CTAGGGATAAAGCTTCACGTCAGACGATGGAAGGGGGCCGATGAGGGTGG TACTGGTGGTGCGGGGTCGGGTATGCAAGAGAGGGCTCGCAAATGGCGGC AGTCGGAGGCCCGCAATATCCTGCAAGGTACACTAAGCCAGAGCAAGGTC GGCAGTGCCTGCGGGGATGGTCGAGGTGACGGAAATTCTGGGTTTATCGC GACCGCTCATCACAGAGACGATCAGGCGGAGACAATATTACTGAAAGCGC TGCGTGGGGCGCATATCACCAAGATGCAGGCAAGACCCGGAGAAGTGGAC ACATGAAGACAGATAACAATCCAAAGGTTCAATGGCAGCCGGATATTCAT TTTTGGAAGCCGAGATTTACTTTTTTACACTTGCGGCGTATGGTGCACCC TTTCGGATTGGATCAACGTCAGCACTCACTGTATACATTGAATTGAATTA TGAGTTTATCCATATGGTTGACAACACCGTGCAGGAGTAGTTAGACTGAG GTACGTTCTTCGACTATAGCTTGGCTTATTGTACCGGGCAATTTATCGTG TAGGAATGGATGCGAACGAGAATCCTTTCCACCCGCGGGAGCCTTCGATC TTGGAAGCTATTTTTCAAACTCTGGCAACATTGTAGGCATATCACGTAAA AATCCATGAACAGCTGACGCTATACAGTAGTTTTCAAGTTGAAACTGGAT GTAGTTCACGTGCCAGACGGGGAACCATTGGAGTTCCGCGAAAAAATCAA GTCTCTCCTGTCTTGTTACGATGACTCAGGGCATGGCGTGGGTAGCAGGT CCATTTATTCGGCCTTTACTCGAAGCTCGGAAGTCCGACATTGTGGATTT CCTTCAGCAGACGGGGCAAGGTTGGAGAGAGGATGCCAGCAATCAAGTCG CCAAGTACACGCGAAATCGCGTCCGGTGGGTTATGCACTCCAAGAGCGCC AATCTCACGAGATACAAGATTTCCCTTGAACATAAGTAGTGCACTGATGA AGTTCGCGTACGAAAACTCGATTCTTCTGCAGACAGTATTGGAGATGGCT AGCTTCGTCTTCTTCCTTGTGTTGAGGCAGTTTTATCCTTTCCTCCTCTC GTCCGCTTTTTCCAGACTCCAACTAATGCCTCTGCTGCAAGATCTCGCCG GTTGTGTTGGCGCCCTTGACACCCGATTGGATGAATTGTCCCGCCAGAGC AAACTTGCTAGAGAAATGGTCCAATCACAGGCCGAGTACTGGGAACATCA ACATTGCGTCAGCGCTAATCCTGGCCTTGACAACGGGGAGCAATCCGAAT CGAGAAGACAGGAGAGTGGTTTTCCTGCGGAGCGGCGATTGGATTTGTTC CCTCTTTTGCCTTTCCTACGAGTAAGGGGAAACAAAGGAGATGCAGGAGA CGGGTGCAGAGAAAGACCCCTGCCGGAGCTTGTTAGAGAAGAGCTGCTTC ATAGATTCGTGACAGGTACGTTGTTTGCAGATGTTGGGTATACGACCTCG TGATTTACCACGTTCCCCCACGAAGTCTAATTAATCATTGCAGTGTTGTT TTACCTGTTTTTGTTGAAAGTTTGTTCCTTACCCGCTGGTATCTGTTTAC TTCAGTCGACTATACTTGTAGTTGATGCTTCGCTGAAGGAGAAACAGACT GGGAGCAACAAGCGGTGGCCGAGAAAAAAGAAAGACAAGCTACAGTGAGG ATATCACCCACTGAATATCTTCATGGATGTTGTGAGATATACGTTCTAGT GGACTGCTAGAGCACGCCAAACCGTAGTGTCTGGTGAGTGAACTAACTAT CTGTTTGTTGGCACGTTGATCTCATGTTTCGACGCGAATTGAGCCCTCTC CTGTCGTTCCGTCCTCCCGAGGACGGACGTGTGGTTGATATGATCTAACA ACGATGGCGTGGAAAACATGAATCCCGCCCCGCCACCGTCGAACAAAATC ACACCTCGTTGCCAAATGTCACAATGTACTATATAGTTAACCTCTTCGTG TTCCTCATAGCGTTCATCTCCTTCCCGACTTTGTCCCCGCGGCCAGCAAA CACTCGGGGCGCAGTGCTCCCGTATGCGCAGCTTCAAATTCTCATGCGTC AGGTGGATGGCGGCGGTAACAAGTGGTCTTTATCGCTCGGGGGTGGCCTA ACACTGCGTCGATTAGGTAAATATGTCGATCTATGCCGTGCTCGGTGGTG AGAGTATCATCCCACCTTGGGGAAGCGCACTATAATACGCCGTCGGCTAA GTCCTGTTCATGACTTTTGAGCGGCTGCTGGCTTGTTTGGCTGATGCATC TTTTCGCGCACGTTTTGCCAGCCCTGGAAGAAGTAGTGCCCAGGATTGGT CGTTGGTATGATTGATTTGTGGTGTCGGTGTAGCGCTGTGAAGAGAAACC TGCAGTTAACTGCCGACATTGTCTTGTTACACCTGTCTATCAGTGTCGAG TTTGCTGTGTTGCTCTTGGTGATGTCTACTGTGTGTCACGATACACACGA CCGCGAATCTCCAATCCCAGCTTGCTGCTTGTTGGCCCTCAAAAAACTGC AGGAGACTTTCTTCAGGTACAACCGAATGACGACGTGCGAGAAAGTAGCT CTCGCGTGGACGTTGCAGGGTCTTCGAGCTTACAACTTTCTCTTAGCGAA GCTGCAGCTGCTGGTAGTCCGCATGATGGTGGCGAAGGCGGCGATGGCAC AGGAAAGAGAGAGCGGGGCATGGTGCTGTACAATGTGTCTCCTGGGACCA AATTGCATGTCAGGTTTGTTTGAGGGTCATATTGCGGCTAGCGAATAACC GAATCGCTACCGATTTTGTCCGTGTGTTGCCAAAGAATTCGAGAACTCAT GATGGTTTTGATGTGATTCACCTTTGGCGTTGCATTCGTGCTACCTTGCG CATAATGCGCGTTCCAACGGTGAAAGCCTCCCTGTTGGAGCGTGGTTCAA GCTTGGAGTATCGACGAAAGACGTGTGAATGTATTCCCGTTGCTTCCTCC TAATCTAGTTAGTGCTCATTCCATTATTCAAGTCACTTGCCTATTTCTAC TTGTATTGTCTTTTTTCCCAGGCGACGGCGGGATGGCGATCGCTTCCGCC CGAAGTGGCGGGACAGGCCTACCAGACTCAAGGATTTTCTGCGTGGGCAG GGTGTGCCGCTGCATCGTCGAGACGAGGTGGCTTTAATCTGCGATCAAAA AGATGATGTGAGCAGTTTCGTTAGAAATGCAACGCAACACAATCTTCGTG CTATTAAAACATTTTTTTCAAAACTCTTCTCACCCGGTGGCCCAAATAGG GCCTAGCAAGTAATTGACTGTTCCGTTCTGGATGTACCGTTGCCGTGCAT TTCATGTTCGGTCTCAGAGAGCGAAGTTCATCGGTGTATGTATGCAGCTT GACCCGAAATAGTCAAGACTATGTACTACATACTGGCTTTGTGTGTTATA GACAAGGCAGTTTTTGGACGCAAATACGTTTGAGAGCATGAAATACTCCC CAACAGCTGGCAACCACGTCGTACCTTACAGTTTTGTTTCCCTGGCGTGT TTCCCTATCCGATCCATTTCCCCTGGCGCTCTTAATCCTCCCCACAGATC GTCGCCGTATACCCCTACTTCGCTGGGGCGGAATTTAACGAGGATACAAC AGGCACTGTTCCGATTCGTGTGAGACTGGAGGGGGCGCCTATCTGGTGTC CCCACCCCGGACGAGATGTCCAAGGCGGAAGGGAGCATGATTTCGGTGGA TATGTTAATGAGGATGGCTCGTGTATGTGATCCCTACAAAGTCGACCCAT GCCTGAGTTATACCGTCCTTATTAGCAATCAATGCTCGATCAACCTGGTG GCCAGATTCCATATCGCAGTCTGGTGTACGGCACTGCACCCTATTGTTCT GTAGGGCAATCTCCCAGTTGTCTCCATAGGGGGGATGTTCGGCCCAGCCA GGGTAGTAATAATAGTGAACTACCGTATTTTCTCATCTGAACTGGACGCC TTCTGGAAAATACGGAAAACGATTCGGTTGCGTACAGTTGGATACTGTTG GTGTTACAGTTATTGGTGTTACAAGTGGATGTGGTTGGCGGGTATAGAAA GCTAGCCAGCTAAAAGGACAAGTCTCGTGGAGTGATACTCGCAAATTGTG GTGTATTGTACATCGTTTTGTTTCATCTCTCTGGTACACGGCATCTACAG CATTGTCACTGTAGTAGTAGCGGATCGTCGTGCTTGTGTGGAAATTTTTC ACACAACCTCATCGCTGTAACGAGGCCTGTTAATGCCCGGCCGGCAGTAC GCTCTGCTGATGGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4536:6315..12329-

>mRNA_H-paniculata_contig4536.11397.1 ID=mRNA_H-paniculata_contig4536.11397.1|Name=mRNA_H-paniculata_contig4536.11397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4470bp|location=Sequence derived from alignment at H-paniculata_contig4536:6315..12329- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGAGGCATCCTTTGCGCCAGGCAGTGCGTCTCTATGCTCGGATAT
TAAGTGCTTGTTGGTGATGTCCTGGATAACGATTAATGCTGTAGGAAGCA
AGATGAGAGAGGCATCCTTTGCGCCAGGCAGTGCGTCTCTATGCTCGGAT
ATTAAGTGCTTGTTGGTGATGTCCTGGATAACGATTAATGCTGTAGGAAG
CAAGGCGAACCTGCGGACCGGCTTAAGTCCTGCTTTCGGTACCTTGTGTC
AACAAACAGTTAGGAGCACGAGAACATGCGACACCTACCGAAATCTGAGG
CATACGGCCCAGTCGCCTTCTACTGCTTGGACTGATCGGCAATCGTGTCA
TTTCTTCAAGAGCATAATCACTTCGGTGGGATCGTCATGCAGTGGTTGCA
CATGGTCAGCACAACAGCGACTGCGGCAGTCGAGGCGCTGGGCTCTTGCT
GAGTCTGTGCACGGTTCGCCTGGAGAATGCGGCAACACTTTCCAGCCGCA
AGACCACAATGTTGCTACCGTTGACGGCAATGTTGATCTCTCCCATCATC
CTCATGCCGATAAGACGGAGCGCAGAGAAGATGTGACGGCAACAACGTTA
CCTCAAGATGAAACAAAGAGAAGCGGTAGCAGTGAAACCATTGGTCGGAA
TTTTGAGTGCTTGACCGAACTGGAACCTCTTGTGCAGCAGGTGGCCGTGG
CTTTGGAAGAGCGTTGTGGCGTGCATGGTGGAGATCAGGCGAACCTGCGG
ACCGGCTTAAGTCCTGCTTTCGGTACCTTGTGTCAACAAACAGTTAGGAG
CACGAGAACATGCGACACCTACCGAAATCTGAGGCATACGGCCCAGTCGC
CTTCTACTGCTTGGACTGATCGGCAATCGTGTCATTTCTTCAAGAGCATA
ATCACTTCGGTGGGATCGTCATGCAGTGGTTGCACATGGTCAGCACAACA
GCGACTGCGGCAGTCGAGGCGCTGGGCTCTTGCTGAGTCTGTGCACGGTT
CGCCTGGAGAATGCGGCAACACTTTCCAGCCGCAAGACCACAATGTTGCT
ACCGTTGACGGCAATGTTGATCTCTCCCATCATCCTCATGCCGATAAGAC
GGAGCGCAGAGAAGATGTGACGGCAACAACGTTACCTCAAGATGAAACAA
AGAGAAGCGGTAGCAGTGAAACCATTGGTCGGAATTTTGAGTGCTTGACC
GAACTGGAACCTCTTGTGCAGCAGGTGGCCGTGGCTTTGGAAGAGCGTTG
TGGCGTGCATGGTGGAGATCAGATCCTTGTGCTCGTTAGTGGAGGAAGTG
ACTCCGTAGCTCTCCTCGTCGCCCTTCTCAGTGCCGCGCCGTTTTTTCAG
CCTCACCTCCGCGTGGAAGCGGTGCACTTCAACCATGCCTTGCGAGGCGA
AGACTCTCAAGCCGATGAAACGTTTGTCTCCAACTTGGCGCAAAGCCTAG
GGATAAAGCTTCACGTCAGACGATGGAAGGGGGCCGATGAGGGTGGTACT
GGTGGTGCGGGGTCGGGTATGCAAGAGAGGGCTCGCAAATGGCGGCAGTC
GGAGGCCCGCAATATCCTGCAAGGTACACTAAGCCAGAGCAAGGTCGGCA
GTGCCTGCGGGGATGGTCGAGGTGACGGAAATTCTGGGTTTATCGCGACC
GCTCATCACAGAGACGATCAGGCGGAGACAATATTACTGAAAGCGCTGCG
TGGGGCGCATATCACCAAGATGCAGATCCTTGTGCTCGTTAGTGGAGGAA
GTGACTCCGTAGCTCTCCTCGTCGCCCTTCTCAGTGCCGCGCCGTTTTTT
CAGCCTCACCTCCGCGTGGAAGCGGTGCACTTCAACCATGCCTTGCGAGG
CGAAGACTCTCAAGCCGATGAAACGTTTGTCTCCAACTTGGCGCAAAGCC
TAGGGATAAAGCTTCACGTCAGACGATGGAAGGGGGCCGATGAGGGTGGT
ACTGGTGGTGCGGGGTCGGGTATGCAAGAGAGGGCTCGCAAATGGCGGCA
GTCGGAGGCCCGCAATATCCTGCAAGGTACACTAAGCCAGAGCAAGGTCG
GCAGTGCCTGCGGGGATGGTCGAGGTGACGGAAATTCTGGGTTTATCGCG
ACCGCTCATCACAGAGACGATCAGGCGGAGACAATATTACTGAAAGCGCT
GCGTGGGGCGCATATCACCAAGATGCAGGGCATGGCGTGGGTAGCAGGTC
CATTTATTCGGCCTTTACTCGAAGCTCGGAAGTCCGACATTGTGGATTTC
CTTCAGCAGACGGGGCAAGGTTGGAGAGAGGATGCCAGCAATCAAGTCGC
CAAGTACACGCGAAATCGCGTCCGGGCATGGCGTGGGTAGCAGGTCCATT
TATTCGGCCTTTACTCGAAGCTCGGAAGTCCGACATTGTGGATTTCCTTC
AGCAGACGGGGCAAGGTTGGAGAGAGGATGCCAGCAATCAAGTCGCCAAG
TACACGCGAAATCGCGTCCGACTCCAACTAATGCCTCTGCTGCAAGATCT
CGCCGGTTGTGTTGGCGCCCTTGACACCCGATTGGATGAATTGTCCCGCC
AGAGCAAACTTGCTAGAGAAATGGTCCAATCACAGGCCGAGTACTGGGAA
CATCAACATTGCGTCAGCGCTAATCCTGGCCTTGACAACGGGGAGCAATC
CGAATCGAGAAGACAGGAGAGTGGTTTTCCTGCGGAGCGGCGATTGGATT
TGTTCCCTCTTTTGCCTTTCCTACGAGTAAGGGGAAACAAAGGAGATGCA
GGAGACGGGTGCAGAGAAAGACCCCTGCCGGAGCTTGTTAGAGAAGAGCT
GCTTCATAGATTCGTGACAGACTCCAACTAATGCCTCTGCTGCAAGATCT
CGCCGGTTGTGTTGGCGCCCTTGACACCCGATTGGATGAATTGTCCCGCC
AGAGCAAACTTGCTAGAGAAATGGTCCAATCACAGGCCGAGTACTGGGAA
CATCAACATTGCGTCAGCGCTAATCCTGGCCTTGACAACGGGGAGCAATC
CGAATCGAGAAGACAGGAGAGTGGTTTTCCTGCGGAGCGGCGATTGGATT
TGTTCCCTCTTTTGCCTTTCCTACGAGTAAGGGGAAACAAAGGAGATGCA
GGAGACGGGTGCAGAGAAAGACCCCTGCCGGAGCTTGTTAGAGAAGAGCT
GCTTCATAGATTCGTGACAGCAAACACTCGGGGCGCAGTGCTCCCGTATG
CGCAGCTTCAAATTCTCATGCGTCAGGTGGATGGCGGCGGTAACAAGTGG
TCTTTATCGCTCGGGGGTGGCCTAACACTGCGTCGATTAGCAAACACTCG
GGGCGCAGTGCTCCCGTATGCGCAGCTTCAAATTCTCATGCGTCAGGTGG
ATGGCGGCGGTAACAAGTGGTCTTTATCGCTCGGGGGTGGCCTAACACTG
CGTCGATTAGGAGACTTTCTTCAGGTACAACCGAATGACGACGTGCGAGA
AAGTAGCTCTCGCGTGGACGTTGCAGGGTCTTCGAGCTTACAACTTTCTC
TTAGCGAAGCTGCAGCTGCTGGTAGTCCGCATGATGGTGGCGAAGGCGGC
GATGGCACAGGAAAGAGAGAGCGGGGCATGGTGCTGTACAATGTGTCTCC
TGGGACCAAATTGCATGTCAGGAGACTTTCTTCAGGTACAACCGAATGAC
GACGTGCGAGAAAGTAGCTCTCGCGTGGACGTTGCAGGGTCTTCGAGCTT
ACAACTTTCTCTTAGCGAAGCTGCAGCTGCTGGTAGTCCGCATGATGGTG
GCGAAGGCGGCGATGGCACAGGAAAGAGAGAGCGGGGCATGGTGCTGTAC
AATGTGTCTCCTGGGACCAAATTGCATGTCAGGCGACGGCGGGATGGCGA
TCGCTTCCGCCCGAAGTGGCGGGACAGGCCTACCAGACTCAAGGATTTTC
TGCGTGGGCAGGGTGTGCCGCTGCATCGTCGAGACGAGGTGGCTTTAATC
TGCGATCAAAAAGATGATGCGACGGCGGGATGGCGATCGCTTCCGCCCGA
AGTGGCGGGACAGGCCTACCAGACTCAAGGATTTTCTGCGTGGGCAGGGT
GTGCCGCTGCATCGTCGAGACGAGGTGGCTTTAATCTGCGATCAAAAAGA
TGATATCGTCGCCGTATACCCCTACTTCGCTGGGGCGGAATTTAACGAGG
ATACAACAGGCACTGTTCCGATTCGTGTGAGACTGGAGGGGGCGCCTATC
TGGTGTCCCCACCCCGGACGAGATGTCCAAGGCGGAAGGGAGCATGATTT
CGGTGGATATGTTAATGAGGATGGCTCGTGTATGTGAATCGTCGCCGTAT
ACCCCTACTTCGCTGGGGCGGAATTTAACGAGGATACAACAGGCACTGTT
CCGATTCGTGTGAGACTGGAGGGGGCGCCTATCTGGTGTCCCCACCCCGG
ACGAGATGTCCAAGGCGGAAGGGAGCATGATTTCGGTGGATATGTTAATG
AGGATGGCTCGTGTATGTGA
back to top