mRNA_H-paniculata_contig4536.11396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4536.11396.1
Unique NamemRNA_H-paniculata_contig4536.11396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Match: D7FGX1_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.450e-24
Identity = 68/201 (33.83%), Postives = 92/201 (45.77%), Query Frame = 3 
Query:   93 EEGTAAARRLFERITAVHWIDGGNGDLAGSFPDNSAALVSLASRQGLAVRVHGTPYQWGNPCRPWLALEKDKFLTSLEAFRDVLDGRNACCCVGSGGGVSCLCGDERGHSGMGILAARSAGGGNDNDLDLDKRDLA---------------------------------------KSFLYFENQGPSLDRHFQLLTEFSPE 578
            + G+ AA RLF R+ AVHW+DG N  +AGSFP N  +L  LA+   L++RVHGTPYQW +  RPWLA E   FL S+E FR  L  R      GS                    A+R +GGG+  ++ +   D A                                       K  +YFEN+ PSL+ HF++L + + E
Sbjct: 1234 DNGSCAANRLFGRVAAVHWVDGANAAVAGSFPTNLRSLARLAALPNLSIRVHGTPYQWSSQYRPWLASEATAFLASVEGFRRALRSREE----GSAFATK-----------SSTTASRMSGGGDGGEVGVFSTDAAARXXXXXXXXXXXXXESEGSGGEGSKGGGSRVGGAAFDVKRLVYFENEQPSLENHFRVLADLNTE 1419
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BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Match: A0A835ZEC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.050e-18
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 3 
Query:  108 AARRLFERITAVHWIDGGNGDLAGSFPDNSAALVSLASRQ-GLAVRVHGTPYQWGNPCRPWLALEKDKFLTSLEAFR 335
            AARRLF R+ AVHW+D GNG   GS P ++AAL +LA+    + +RVHG+PYQW N  RPWLALE+D F+ ++ A R
Sbjct:  209 AARRLFSRVAAVHWVDAGNGMHRGSLPADAAALAALAAEHPSVRLRVHGSPYQWRNADRPWLALERDAFVRAVGAAR 285
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BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Match: A0A835YEW1_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YEW1_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 6.050e-6
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:  108 AARRLFERITAVHWIDGGNGDLAGSFPDNS--AALVSLASRQGLAVRVHGTPYQWGNPCRPWLALEKDKFLTSL 323
            AA  + + I AVH++D G         D +  + L +   RQ L++ +HGTP QWG+  RPW+A EKD+FL  L
Sbjct:  247 AAAAVLDSIRAVHFLDAGLNCRGVHLTDPTPISHLAARHRRQPLSLVLHGTPRQWGDRRRPWIAAEKDRFLALL 320
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BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Match: A0A2G5CBM7_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CBM7_AQUCA)

HSP 1 Score: 55.5 bits (132), Expect = 1.420e-5
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 3 
Query:  117 RLFERITAVHWIDGGNGDLAGSFPDNSAA--LVSLASRQGLAVR--VHGTPYQWGNPCRPWLALEKDKFLTSLE 326
            RL   IT +H++D G         DNS    +      + L +R  +HGTP QW +  RPW+A EKDK L  LE
Sbjct:  220 RLINSITEIHYVDVGLNSAGAYLTDNSVIENIAEKVRNRALGIRFALHGTPRQWCDSRRPWIANEKDKLLQLLE 293
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BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Match: A0A8J4AKG5_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AKG5_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 2.610e-5
Identity = 30/73 (41.10%), Postives = 39/73 (53.42%), Query Frame = 3 
Query:  120 LFERITAVHWIDGGNGDLAGSFPDN--SAALVSLASRQGLAVRVHGTPYQWGNPCRPWLALEKDKFLTSLEAF 332
            L + I AVH+ D G         D   +A L    SR+ L V +HGTP QW +  RPW+A E+D+FL  L  F
Sbjct:  224 LLDSIHAVHFFDAGLNCRGVHLTDPRVTALLGKRHSRRALVVHLHGTPRQWADRRRPWIAQERDRFLGLLGDF 296
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BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Match: A0A8B6XMQ5_HYDVU (UPF0565 protein C2orf69 homolog n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XMQ5_HYDVU)

HSP 1 Score: 53.1 bits (126), Expect = 7.420e-5
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:  120 LFERITAVHWIDGGNGDLAGSFPDNSAALVSLASRQGLAVRVHGTPYQWGNPCRPWLALEKDKFLTSLE 326
             F R++A  W+D GN   +G++  N   L S A+R    + V+ TPYQ  +  RPW+++E++KF+  ++
Sbjct:  181 FFSRMSAFLWLDSGNCGQSGAYIVNELCL-SYAARMIPKIYVYSTPYQINDDSRPWISIEREKFIRLMK 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4536.11396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FGX1_ECTSI1.450e-2433.83Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A835ZEC5_9STRA1.050e-1855.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YEW1_9CHLO6.050e-640.54Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2G5CBM7_AQUCA1.420e-539.19Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
A0A8J4AKG5_9CHLO2.610e-541.10Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A8B6XMQ5_HYDVU7.420e-534.78UPF0565 protein C2orf69 homolog n=2 Tax=Hydra vulg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4536contigH-paniculata_contig4536:4814..5462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2880.D7FGX1
Preferred nameC2orf69
Hectar predicted targeting categoryother localisation
GOsGO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
EggNOG free text desc.Uncharacterised protein family UPF0565
EggNOG OGsKOG2800@1,KOG2800@2759,KOG4341@1,KOG4341@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-11_000950.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size649
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4536.11396.1prot_H-paniculata_contig4536.11396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4536 4822..5394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.4886286-UTR-H-paniculata_contig4536:4813..48211622930360.4886286-UTR-H-paniculata_contig4536:4813..4821Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 4814..4821 +
1691481257.1859324-UTR-H-paniculata_contig4536:4813..48211691481257.1859324-UTR-H-paniculata_contig4536:4813..4821Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 4814..4821 +
1622930360.5232658-UTR-H-paniculata_contig4536:5394..54621622930360.5232658-UTR-H-paniculata_contig4536:5394..5462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 5395..5462 +
1691481257.2147582-UTR-H-paniculata_contig4536:5394..54621691481257.2147582-UTR-H-paniculata_contig4536:5394..5462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4536 5395..5462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.5065148-CDS-H-paniculata_contig4536:4821..53941622930360.5065148-CDS-H-paniculata_contig4536:4821..5394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 4822..5394 +
1691481257.1967916-CDS-H-paniculata_contig4536:4821..53941691481257.1967916-CDS-H-paniculata_contig4536:4821..5394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4536 4822..5394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4536.11396.1

>prot_H-paniculata_contig4536.11396.1 ID=prot_H-paniculata_contig4536.11396.1|Name=mRNA_H-paniculata_contig4536.11396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MTLARNMSLEGGEQGANTAEVSVAAGGGEEGTAAARRLFERITAVHWIDG
GNGDLAGSFPDNSAALVSLASRQGLAVRVHGTPYQWGNPCRPWLALEKDK
FLTSLEAFRDVLDGRNACCCVGSGGGVSCLCGDERGHSGMGILAARSAGG
GNDNDLDLDKRDLAKSFLYFENQGPSLDRHFQLLTEFSPE*
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mRNA from alignment at H-paniculata_contig4536:4814..5462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4536.11396.1 ID=mRNA_H-paniculata_contig4536.11396.1|Name=mRNA_H-paniculata_contig4536.11396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=649bp|location=Sequence derived from alignment at H-paniculata_contig4536:4814..5462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTTCGACATGACTCTAGCCCGAAATATGTCGCTTGAAGGCGGTGAACAG
GGCGCCAACACTGCCGAGGTGTCTGTAGCTGCTGGCGGAGGCGAAGAGGG
GACCGCGGCCGCCAGGCGATTGTTTGAACGGATAACTGCTGTGCATTGGA
TTGACGGGGGAAATGGAGACCTTGCGGGATCTTTCCCCGACAATTCTGCT
GCCTTGGTGTCACTGGCCTCTCGCCAAGGGCTCGCTGTCCGCGTCCATGG
AACGCCTTACCAATGGGGGAACCCCTGCCGGCCGTGGCTCGCTCTCGAGA
AGGATAAGTTCTTGACCTCTTTGGAGGCCTTCCGTGACGTGTTGGACGGT
CGAAATGCGTGCTGCTGTGTTGGTAGTGGTGGTGGTGTTTCTTGTCTTTG
CGGCGACGAGAGGGGACACTCTGGTATGGGGATATTGGCAGCGCGGAGTG
CTGGAGGAGGCAATGATAATGACCTCGATCTTGATAAGAGGGATCTGGCG
AAAAGTTTCTTGTACTTTGAAAATCAAGGGCCGTCCTTGGACCGTCACTT
CCAACTTTTGACAGAATTCAGCCCCGAGTGATTTCGTTTATGATCATGAA
GATTGACTGTCTTTTGATGTCGGATGGGGTCTCACTGTTGTGGTAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4536:4814..5462+

>mRNA_H-paniculata_contig4536.11396.1 ID=mRNA_H-paniculata_contig4536.11396.1|Name=mRNA_H-paniculata_contig4536.11396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig4536:4814..5462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCTAGCCCGAAATATGTCGCTTGAAGGCGGTGAACAGGGCGCCAA
CACTGCCGAGGTGTCTGTAGCTGCTGGCGGAGGCGAAGAGGGGACCGCGG
CCGCCAGGCGATTGTTTGAACGGATAACTGCTGTGCATTGGATTGACGGG
GGAAATGGAGACCTTGCGGGATCTTTCCCCGACAATTCTGCTGCCTTGGT
GTCACTGGCCTCTCGCCAAGGGCTCGCTGTCCGCGTCCATGGAACGCCTT
ACCAATGGGGGAACCCCTGCCGGCCGTGGCTCGCTCTCGAGAAGGATAAG
TTCTTGACCTCTTTGGAGGCCTTCCGTGACGTGTTGGACGGTCGAAATGC
GTGCTGCTGTGTTGGTAGTGGTGGTGGTGTTTCTTGTCTTTGCGGCGACG
AGAGGGGACACTCTGGTATGGGGATATTGGCAGCGCGGAGTGCTGGAGGA
GGCAATGATAATGACCTCGATCTTGATAAGAGGGATCTGGCGAAAAGTTT
CTTGTACTTTGAAAATCAAGGGCCGTCCTTGGACCGTCACTTCCAACTTT
TGACAGAATTCAGCCCCGAGTGAATGACTCTAGCCCGAAATATGTCGCTT
GAAGGCGGTGAACAGGGCGCCAACACTGCCGAGGTGTCTGTAGCTGCTGG
CGGAGGCGAAGAGGGGACCGCGGCCGCCAGGCGATTGTTTGAACGGATAA
CTGCTGTGCATTGGATTGACGGGGGAAATGGAGACCTTGCGGGATCTTTC
CCCGACAATTCTGCTGCCTTGGTGTCACTGGCCTCTCGCCAAGGGCTCGC
TGTCCGCGTCCATGGAACGCCTTACCAATGGGGGAACCCCTGCCGGCCGT
GGCTCGCTCTCGAGAAGGATAAGTTCTTGACCTCTTTGGAGGCCTTCCGT
GACGTGTTGGACGGTCGAAATGCGTGCTGCTGTGTTGGTAGTGGTGGTGG
TGTTTCTTGTCTTTGCGGCGACGAGAGGGGACACTCTGGTATGGGGATAT
TGGCAGCGCGGAGTGCTGGAGGAGGCAATGATAATGACCTCGATCTTGAT
AAGAGGGATCTGGCGAAAAGTTTCTTGTACTTTGAAAATCAAGGGCCGTC
CTTGGACCGTCACTTCCAACTTTTGACAGAATTCAGCCCCGAGTGA
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