mRNA_H-paniculata_contig4534.11393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4534.11393.1
Unique NamemRNA_H-paniculata_contig4534.11393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4534.11393.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.620e-5
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:  205 KNNLKQQLERLDKGNTRSPGGSRYKALFSGLL--EASKANGSQ--------------------ISVGDHGGFKPREFTSIREL 387
            K+NLK QLE+L+K N  SPGG R K LF+GLL  + + + G Q                    + +G+HGG   R FT I +L
Sbjct:    2 KDNLKLQLEKLEKDNAASPGGRRNKGLFAGLLGIDGAPSRGGQRXXXXXXXXXXXXXXXXXFVVMIGEHGGKASRSFTPIADL 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4534.11393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR28_ECTSI7.620e-538.55DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4534contigH-paniculata_contig4534:7799..13033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size450
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4534.11393.1prot_H-paniculata_contig4534.11393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4534 7967..13033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.3000543-UTR-H-paniculata_contig4534:7798..79661622930360.3000543-UTR-H-paniculata_contig4534:7798..7966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4534 7799..7966 +
1691481257.1051736-UTR-H-paniculata_contig4534:7798..79661691481257.1051736-UTR-H-paniculata_contig4534:7798..7966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4534 7799..7966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.317837-CDS-H-paniculata_contig4534:7966..80411622930360.317837-CDS-H-paniculata_contig4534:7966..8041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 7967..8041 +
1691481257.1153762-CDS-H-paniculata_contig4534:7966..80411691481257.1153762-CDS-H-paniculata_contig4534:7966..8041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 7967..8041 +
1622930360.3363621-CDS-H-paniculata_contig4534:10421..105401622930360.3363621-CDS-H-paniculata_contig4534:10421..10540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 10422..10540 +
1691481257.135236-CDS-H-paniculata_contig4534:10421..105401691481257.135236-CDS-H-paniculata_contig4534:10421..10540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 10422..10540 +
1622930360.3539603-CDS-H-paniculata_contig4534:12945..130331622930360.3539603-CDS-H-paniculata_contig4534:12945..13033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 12946..13033 +
1691481257.1481817-CDS-H-paniculata_contig4534:12945..130331691481257.1481817-CDS-H-paniculata_contig4534:12945..13033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 12946..13033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4534.11393.1

>prot_H-paniculata_contig4534.11393.1 ID=prot_H-paniculata_contig4534.11393.1|Name=mRNA_H-paniculata_contig4534.11393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MGTSKEPPKAGTKNNLKQQLERLDKGNTRSPGGSRYKALFSGLLEASKAN
GSQISVGDHGGFKPREFTSIRELLNADDASAANSGGGGGGGGGG
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mRNA from alignment at H-paniculata_contig4534:7799..13033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4534.11393.1 ID=mRNA_H-paniculata_contig4534.11393.1|Name=mRNA_H-paniculata_contig4534.11393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5235bp|location=Sequence derived from alignment at H-paniculata_contig4534:7799..13033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTCGGTAGCGGAGAAAGAGAGGGCGCGGGTCTTGCATGATTTATCTC
TCTGCCAGGCCGGAAGAATCCCTTCAATGAGTCAACATTGTAGAGGTTTG
AAGTTTTAGCAGGTTGTTGTTGGGTTCGGCGGGTTTGTCTTTTCTGCTTT
GTTCAAGAGGGGCGACAAATGGGGACGTCGAAAGAGCCACCCAAGGCTGG
AACGAAGAACAACCTGAAGCAGCAGCTGGAGAGACTCGATAAGGTATAGC
AAAGAAAACACTAGATACTGTTGTCTGTACCTCGTTTTTGCGCACAACGA
CGACTATGCGGAACTTACGGTCAGTACGATTCGTCACTATACATTGATTC
AAGGCGCACGGGCTCTTGGCGGGCGATGCTCCCATGTATATGGGTTGATC
CGTGTAAGGTCGACCAATCAGAATTATTTTCACTCATGGGTAGGGCATTG
CCCTGTAAGGCCTGTAGGGCCACCCAACCGGTACTAGAACTACATTCTCT
GGGCTATGACTGACGGCGGCCAGCAGAGCTTGGGGTCAGTGGTGGCGTCG
TCGTGGTGTATCTTTGGCACGGTATTGTCATATCTTCGTTCTGCTGCTAA
TTGTACCTAACAGCGTTGACACTTTCGTCCTCTGTGGGGATTGGCTTATC
CTTAGTGGGCCTGCGCTAGCCGATAGGTGCGCCATTAGGGCGGGAGATGT
CTCAAGTGCCGCGCGGCGCAGAAGAATCTTAGTCTGCCGAAATTCATCAA
GAGCAAGAGCAGCAAGCGAGCTCCTACTTCTTTCTGCAGCAAGAACTCTT
GGTCGAGGAAGAATTTACTTCATGTTTCTAGTTTTTTTTTCATCCTATCT
GTAGTTGTTCGTCTGTTTGCCTTTTTGTCGACTTCGGCGTTCTTGGAGCG
ACTGGAACTTCCTACCCGTCTGTTGTGTACGTTTTCAGTTGCAGTATCTT
CGCAGGATGTATGATGAATTTTGTGGCCACGAATGTGAGGGCTGGATTGA
CTGTACTTGATATACCACAACTGCCACAGAGAGTTAGTATGTAGTTACTA
CGAAAAACGTATTACCCAGGACTAGGGAGTTCGGTAGCACCCGATCTTGG
GGTGTAATTCGACCGTTTATATCGCCGTTTCCCCGAACTCATAACTGGTA
TTTACCTGCATCCATCTTGTAAAATCTGGATGAATCTTGAATCTTGTCAT
GAGGGTGAGACTCGGGTTGACTGGGCTCGATCTACCACCATTGTCATCGA
GAATCGAGGGTTAATTGCTATTAAGAAGGTGTTGCCTATGATTAAGGCTT
TTTTTGGAACCCGGTCTTGAGGTGCAACTCGCCGTGGTGGTGATATTAAG
GTTTTTTTTCTATAAAGGGTCAGTCGGCTGCCTTCGCGCGCACTTGATGA
CGAACGACAGAGAGTTCTCGTGATAATTTGTGCTTCATGCGCATCCTCGA
AAAGGGGTCAAATAAATCTCTGTACACAGGAACAAGTAACGATTTCTGAG
CAGAAAATGACAATATACGTAGTAGTAATGAGATTTCCGAAGAACTCGAC
TACACGATACACGACTCGCCGTGGACGTCGAGAAATCCCACTGTCACCGA
AATCGTGCCCAACTCGTGCTTCGCACTGACACGCTGTTCGCTTCGCTCAA
AACGATCCAATTATTTTCATTAGACACTTGTAAGAATCGGAGCCTCTTGG
CGCCAATTTTGACGCCGTGTACGGTGGAGTAAGAGAGATGAACATATTTT
TATGTCTTCTTGGTTATCTCCCGGTGGTAAGGGACTTTCACTTGGATCCT
CATTTTTTTGTTCGCACAAGACTTGGGCGTCAAGGTTTTTGAGACATTCA
TTGATTTGAAAGATGACAAAAAAAAATATATATATATATAGAGAGAGAGA
TAGAGGGAGAGAGAGAGAAAAAAAAGGTTACGTATAGACCATAGGATCCG
CAACAGTACAAATTTACTGTCACTTGCCATACGAAAGAGGATGCTGCCCA
CGCAGGCCCGGCGCGGGGAGCAGCGGGGTAGTTGTTAGTTGTCGGAGTGA
AACATAGGTGGTCAAGAAAGGGAGAGGACCGAGAGAGGCTGGGGGCTGGG
GGCTGAAGGAGCGCTTGTATCTCCCGTGTGATATCTCACAACAGTGAACA
ACAACAGAGTATCAGTTGATTAGCGATAATGATTGAGGATTGAGGGCACA
ATACAGGTATTCTACAGGAGGTGCCGGTGTTGCCTTGTTTTGATCCGCGA
GTTTCCTTCCTTGTTGTATTTCCCGAGCTTCCCTATATATTACACACACA
CATAGTACTTATTAATAGCTCACTCTCTCATGACAAGCTCGAGCTTGTAA
TTTTTTTTGTAGTGTATCTATTTAGTCATGTCCCATTTTTTTACCCTCTA
TCCATAAGTCGCCTAAACGCAAGTAAGTGAGAGTTTGTTACGTTTCGTTG
CCCTCCGAGAGCAAAAACTTCCGTTTGGTCAACATTTATATATATATATA
TATATATATATATATTTCCGATATTTGCCAACATCTTCCGAGCCCCAAAT
CCGATTCCGCGCTGTTTACTGGGTACATAACCTCCATCCCTTGGTCATTT
TTTTTTTTTCGACGGAAAAAAAGGGAAACACTCGAAGTCCTGGCGGTAGC
CGGTACAAGGCCCTGTTTTCCGGACTTCTGGAAGCTAGCAAGGCAAATGG
CTCACAGATTTCCGTAGGAGATCATGGAGGCTTCAAGCCGAGGTATATAT
GCGTGTGTGTATCATACTAGGTACTCCAGCGTAAGAGTTTTTTTTGCGCC
GTCTGCTTTTTCTTTCGTTTTCCTCCGCTCTGATTGTCGTGTCTTAAGTA
CAAACTTTGGCAGGTTTGGGTATATTTGGGTGCAGTCGCGAGCCCGATAA
AGCTCTACGTTTTCCCCTCTATGGACGGACACGAGTACTCTTGGAGTATT
CACGAGAATAACGAAGAAGACTAATTGCCTGACCATTCAGCATGAACATG
TTTGTTGTAATGTGCCGCGGAAGGACCATCCAAATAAGACTGACTGGTCA
GAATATGATAATAATTATAAAGAAAGATTGTACCAGGGAGTCATAATCCA
CTTTTTTCCCTGTGCGCTTGCATATTCTGATGGAACTCAGGCCAACATAT
GTATACATGTTTTTCTTTCGCCGCGAAGACTCGAAATGAAGATTTCATCC
CCCGGACAAATACGATTACAAGACATGAATAAATACAAGAAAATCTGGAA
TGAATACTGTACCTATTTGAGTTGGGGGAGATGTCCATGTGACGCGAATA
ATATGCAGTGTACTCGATATGCCATGGAGCATCGAAAAGCTGTCCGGCAG
ATAGAGTATTCAATCTGTACAGTACCATCCGGAAAATAAACAGGACCTGC
ATGTGTGACTGTTCACCGACATGGTGATCATCTATAGAGTGACCATTCAT
AGACTTGTAAACGAATATATTCTTGTTTACCCCAAGACAAATAATGATGA
GTGGAGATAGTTACGGCTGCTCCATTCGTATTTTCCGGGGGGTTGAAAGC
CTTTCTGTCTGCTTTGCCACAGGGGGGGGTCCACGACCTCATGGAGTTAT
CGTAGCTTTCGAACAAGCCACACCTGTGCGTTGCTATTATTCTCCCTCTG
CGATTAAGGTCGGGTTCAGGCGGGAGTGCGTGATGGATTGTAATATTATC
TTGTAATTCATGCTATTTTGCTCAAGCTTTCACCGCTCGTGACTACGTGG
TACAGCCTACTATTTTTTTGATACCCCTATCATATCTACCATACCGTTAG
CCGGAGCATACAGTAGCTGCCTCGGTGTCCTTTGCCCATATCAGGCAGGA
GGATGCCACCCCCACCGGGCGCGCCCCCCCCCCCCCCCTCCCACACGTTT
TTTGTTTGTTTGTTTTTTTCTCAAAAACTTGATCTTCTCGAGAGGCGAAC
TCTATCCAATGACATTCATGTATCTTTCAGAAGGGGTTCTTTATCTACCT
AATCGCACATCTTTCGGTGTGCTCAAAGTCAGCGAGTGTCGAAAGTCGGA
CTTAAACAGCATTTTAGCACGCGGGGATAATTTTGTTTTTTAGGGACGGT
GATAATCCTCACTCATTACTGTGTAACGAGGAGAGCGTCATTTCGGAATA
GTTTTCCAAGTCTGTAGTCGGGTCATCTGTGGAACACGAATCTTCGGCGT
ACACATCTTGGGTTGGTCTATTCAAATAGGACGACGTACAAACTGCTCCG
AAATTCTAAGGTCAGGCAGAAAGGAAGCTGTCATTCCTTTAATGCCGAGG
CCAGCTGCGTTTTTGCAAGGGTAATATGGTGTACCCGATGCTGGATAGCT
ATCACCCTTAGGGATACTGCACCAATCGAGACGTGCCGTTGGTTTTTCTT
GGGGGGTTTTGTCCCGTGTATCCAAATGTTACCCATGTGACAGGCGTGAC
TATATACCCTCCCCCCAAGTGGTATGAAACGTGGCGGGGGCGGGGGGAAG
CCAAGAGGTGAGGATAACCGACGCTTTCTTCTGCGATTTTCGATGTTACG
GGAGACTGAGAACAAAAGGAGAAAGAGAGAGGTCGTGCCGTGTTTTTGCG
GCGGGTAATATTAATAATAAAAAAATGCCGTGCTAGTTGTTTGGTATGGA
TATTTTTTCTACTGCAGGAGCGAGAAAAACTTAATTTATGGGTTAGGTGT
GAAGCCTTCAGAATGACTTATTGAGAATCAAGACATGACCCCCGAAGTGA
CGCATCGTAGTAGGTTTGGAGAACACTTGCGAAGCCATAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAACCAGGCTAACCAAGAGCGAAGCTTGTC
CGTCTGCAAACGAAAAAGTAGCGAGCCGTGCTAGTGAATAGAAGTTGACG
TCGGTGAGCCCTTGGGATACGGTTACACGTGCCCAAGCCCACTCTTTCTT
GTGGTTCAATGTTGAACCCAACAATTTGACCCCCTAACTCTCTGCCTCTG
CCTTTTTCTTTTTTTTGTGTGTCCCTGTATCTATCTATCTCTCTCTCTTT
CTCTCTCTCTCTCTCTCTTCTTTTTTATTTCTCTCCTTCTCTTTTTTGCC
CCCACTCCCCACTCACGCACGCACAATGCCATGCACTGCGCTTGCAGAGA
GTTCACAAGCATCCGTGAACTCCTGAATGCGGACGATGCTTCTGCGGCTA
ACTCTGGCGGTGGCGGTGGCGGCGGAGGAGGAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4534:7799..13033+

>mRNA_H-paniculata_contig4534.11393.1 ID=mRNA_H-paniculata_contig4534.11393.1|Name=mRNA_H-paniculata_contig4534.11393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig4534:7799..13033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGACGTCGAAAGAGCCACCCAAGGCTGGAACGAAGAACAACCTGAA
GCAGCAGCTGGAGAGACTCGATAAGATGGGGACGTCGAAAGAGCCACCCA
AGGCTGGAACGAAGAACAACCTGAAGCAGCAGCTGGAGAGACTCGATAAG
GGAAACACTCGAAGTCCTGGCGGTAGCCGGTACAAGGCCCTGTTTTCCGG
ACTTCTGGAAGCTAGCAAGGCAAATGGCTCACAGATTTCCGTAGGAGATC
ATGGAGGCTTCAAGCCGAGGGAAACACTCGAAGTCCTGGCGGTAGCCGGT
ACAAGGCCCTGTTTTCCGGACTTCTGGAAGCTAGCAAGGCAAATGGCTCA
CAGATTTCCGTAGGAGATCATGGAGGCTTCAAGCCGAGAGAGTTCACAAG
CATCCGTGAACTCCTGAATGCGGACGATGCTTCTGCGGCTAACTCTGGCG
GTGGCGGTGGCGGCGGAGGAGGAGGAAGAGTTCACAAGCATCCGTGAACT
CCTGAATGCGGACGATGCTTCTGCGGCTAACTCTGGCGGTGGCGGTGGCG
GCGGAGGAGGAGGA
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