mRNA_H-paniculata_contig4534.11394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4534.11394.1
Unique NamemRNA_H-paniculata_contig4534.11394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4534.11394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4534contigH-paniculata_contig4534:13049..14543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930360.2271516-CDS-H-paniculata_contig4534:13048..131201622930360.2271516-CDS-H-paniculata_contig4534:13048..13120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 13049..13120 +
1691481257.0818737-CDS-H-paniculata_contig4534:13048..131201691481257.0818737-CDS-H-paniculata_contig4534:13048..13120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 13049..13120 +
1622930360.2464404-CDS-H-paniculata_contig4534:14393..145431622930360.2464404-CDS-H-paniculata_contig4534:14393..14543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 14394..14543 +
1691481257.096591-CDS-H-paniculata_contig4534:14393..145431691481257.096591-CDS-H-paniculata_contig4534:14393..14543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4534 14394..14543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4534.11394.1prot_H-paniculata_contig4534.11394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4534 13049..14543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4534.11394.1

>prot_H-paniculata_contig4534.11394.1 ID=prot_H-paniculata_contig4534.11394.1|Name=mRNA_H-paniculata_contig4534.11394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
FLRRIFSAKDPRSMSQPGMRPTVKLGKRLGKDPTAKKQEQHPRLTSAAAG
GCGVGMAGTDEWDEGKKTETTFGK
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mRNA from alignment at H-paniculata_contig4534:13049..14543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4534.11394.1 ID=mRNA_H-paniculata_contig4534.11394.1|Name=mRNA_H-paniculata_contig4534.11394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1495bp|location=Sequence derived from alignment at H-paniculata_contig4534:13049..14543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTTCGAAGGATCTTCAGCGCCAAGGATCCGAGGTCCATGTCGCAGCC
CGGAATGCGGCCGACAGTGAAGGTACCCTGGATAGATCGTGGGGTTTGGT
GGTTACTGTGGCGTCGCCGAAGCTACACTACAGTGTGACATCCTAGTCAT
ACCCTCTATGTCACTAAATTCTGGAGAGCGTACGATCTGACGCTTCCAAC
GGTGCAAAACAACTTGAAAACCGCTATGTTTTCATAAGGTTACACTCCGT
ACTTCCTCTAGATTTGAAAGACTTTTTGCATCACCCGCACGGATGGCTAC
AAGATTTGGTGGGGGCCTTCCTTAAGACCAGGCGCAGAGATTTTTATACG
CTTTTTTTAGATTCGGTCTGCAGAGCTCAATCAATCTGTGTGTTGTTGCA
GCTGCTCTTTTTTTGCCATACCCTTAAACGCAGTATAATTTTTGTGGATA
TCCGTCAATTCAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTAT
CCTTTCTCTATTGACTACGTCGAGATAATCATGTATCCTTCTTTGTTTTT
TCCTTGTATTTGTCAAGATGTTGCCCGAAAACTTTGTTTTCCTATGGGAA
AAATCCATTTTTTTCGCTCTTACTTCCTGATTTTTAGTATTTTTTCTGTG
TGCACTCACGGCACTGGTCAAAATCCAGATTAAAAAAATTAGCCGTACTC
AGTGCCGGAATGGCGTTACAAAGATACGTGGACTCGTTTTTTGGTCATTC
TCTAGAACACGGTGTAGTTTTCAAGGATATCCATTAATCCAGCATTTTTT
TTTTTTTCTCTTTTTTCAAATCCTCTTTCTAATGGCTACGCCGGGATTAT
TATGTATCAGTTTTTTTCTTTTTTCTTTTTTCTTGAAATTGTCGAGATAT
TACCCGAAAACCCTATTTTCCAATGGGAAAATCCATATTTTTGGCTGTAA
CTTCCTGGTTTTCCAATATTTTTGACAAGCTGAAAAAAGATTTTTTTCTG
TGTACAGTCACAGCACTGGTGGAAAAATTCGTATTAAAAATTCGCCATAC
TATTCGAGATATGGCGAGAGAGTGATTAGTATTTCCCACTGTTTTAGTCA
TTATCGGTAGTCAGAGTATCGCATTCCGTCTTTAACTAAAAAAAAAAAAA
TGATATAATGTCATTTCTCATTTTTCAACATGAATCAATTCGAACCGGTT
TCCTATGACGGGATGAATATTTTGCGATTGTTATACATGTACTTGTGCCG
TGGCGAATCACAAATGATTAATTATGAACTAAATTGTTCCGTTTTGTCGT
CGGTTTGTTATCCTCCATCACCATCACCACCCCTGCCGCCGCCAGCTGGG
TAAGCGGCTGGGGAAAGATCCAACCGCCAAGAAGCAAGAACAACATCCGA
GATTGACCTCCGCCGCCGCGGGTGGATGTGGTGTAGGTATGGCAGGGACG
GACGAGTGGGATGAAGGGAAAAAAACGGAAACAACCTTCGGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4534:13049..14543+

>mRNA_H-paniculata_contig4534.11394.1 ID=mRNA_H-paniculata_contig4534.11394.1|Name=mRNA_H-paniculata_contig4534.11394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig4534:13049..14543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTTCGAAGGATCTTCAGCGCCAAGGATCCGAGGTCCATGTCGCAGCC
CGGAATGCGGCCGACAGTGAAGTTTCTTCGAAGGATCTTCAGCGCCAAGG
ATCCGAGGTCCATGTCGCAGCCCGGAATGCGGCCGACAGTGAAGCTGGGT
AAGCGGCTGGGGAAAGATCCAACCGCCAAGAAGCAAGAACAACATCCGAG
ATTGACCTCCGCCGCCGCGGGTGGATGTGGTGTAGGTATGGCAGGGACGG
ACGAGTGGGATGAAGGGAAAAAAACGGAAACAACCTTCGGCAAGCTGGGT
AAGCGGCTGGGGAAAGATCCAACCGCCAAGAAGCAAGAACAACATCCGAG
ATTGACCTCCGCCGCCGCGGGTGGATGTGGTGTAGGTATGGCAGGGACGG
ACGAGTGGGATGAAGGGAAAAAAACGGAAACAACCTTCGGCAAG
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