mRNA_H-paniculata_contig4531.11389.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.510e-49 Identity = 108/223 (48.43%), Postives = 145/223 (65.02%), Query Frame = 3
Query: 282 KEAVQAIVGEQLEYLAPRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKMSNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIK 947
+EA + +Q + LAPR G+ + QSR IL TYF +V+ G+ PN AV A+ RVG KV + RA W ++ +LLTSS + +G R++LDD A +R FIS K + QQVFR T+ E+I C +SNRAVGG+L+RIG RRR G+IK+P +R ARIRRFLVE AA+ +EE+ +AVIVY+ E+F HQLHGS YSYF TD+ V++
Sbjct: 77 QEAREQQAAQQRDDLAPRTGSLLDTSQSRSILLTYFELVQSGVEPNKAVQRTASTLRVGKDKVFKV----RAHWWEKTELLTSSAEGRGVSSGKDG-RKLLDDVQCANLRAFISDKHENGQQVFRRTVREWIKETCNKDLSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQ 294
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE) HSP 1 Score: 184 bits (468), Expect = 6.170e-49 Identity = 104/214 (48.60%), Postives = 140/214 (65.42%), Query Frame = 3
Query: 309 EQLEYLAPRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKMSNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIK 947
+Q + LAP+ G+ + QSR IL TYF +V+ G+ PN AV A RVG KV + RA W ++ +LL SS + +G R++LDD A +R FIS K + QQVFR T+ E+I C +SNRAVGG+L+RIG RRR G+IK+P +R ARIRRFLVE AA+ +EE+ +AVIVY+ E+F HQLHGS YSYF TD++ V++
Sbjct: 86 QQRDDLAPKTGSLLDISQSRSILLTYFELVQSGVEPNKAVQRTAATLRVGKDKVFKV----RAHWWEKTELLASSAEGRGVSSGKDG-RKLLDDVQCASLRAFISDKHENGQQVFRRTVREWIKERCNKDLSNRAVGGLLYRIGYRRRGGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQ 294
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5K8G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G5_9PHAE) HSP 1 Score: 150 bits (380), Expect = 1.290e-37 Identity = 88/217 (40.55%), Postives = 128/217 (58.99%), Query Frame = 3
Query: 300 IVGEQLEYLAPRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKMSNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIK 947
V + ++ L P+ G T QSR+IL YF++VK G S N A A R+G+ KV + R W + +L ++G + + GRRV+ +R FI + +A +QVFR T ++++ CG +MSNRAVGG+L R+G R G+IK+P ER RIR FLV+ A R E+ G AVIVYI E+FVHQ++GS YSYF +D+ +++
Sbjct: 83 FVEDSVQSLRPKTGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAV----RTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTGKDYLECSCGLEMSNRAVGGLLQRLGFERCRGRIKIPPLNEERKNRIRLFLVKMLLAKRPEDAGVAVIVYIDESFVHQVYGSAYSYFPSDDKGIVQ 295
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.510e-37 Identity = 90/220 (40.91%), Postives = 131/220 (59.55%), Query Frame = 3
Query: 300 IVGEQLEYLAPRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKMSNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISI 956
V + ++ L P+ G T QSR+IL YF++VK G S N A A R+G+ KV + R W + +L ++G + + GRRV+ +R FI + +A +QVFR T+ ++++ G +MSNRAVGG+L R+G +RR G+IK+P ER RIR FLV+ D A R E+ G AVIVY+ E+FVHQ HGS YSYF +D+ +++ I
Sbjct: 83 FVEDSVQSLRPKTGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAV----RTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGIAVIVYMDESFVHQAHGSAYSYFPSDDKGIVQDGI 298
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 147 bits (372), Expect = 5.250e-34 Identity = 98/240 (40.83%), Postives = 136/240 (56.67%), Query Frame = 3
Query: 330 PRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKM-SNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISIW----SGAVLALSLRVKKLPSFALFCSHF 1031
P++G T QSR++L F++ K G S N AV A ++G KV IN +W T++ + M K +G RR L + ++R FI+ + A +QVFR T+ E++ C + SNR+VGG+L R+G +RR G+IK P ERLARIRRFLVE D A R E+ G AVIVY+ E+FVHQ HGS YSYF +DE+ V++ I G + + + K A FC F
Sbjct: 127 PKKGEVWTHLQSRMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRIN---NHWWDHRQLYETTAAGRGKMAKEDDGRRR-LTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNMEQPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKFCDGF 362
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.830e-30 Identity = 88/212 (41.51%), Postives = 125/212 (58.96%), Query Frame = 3
Query: 330 PRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFW-RKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKM-SNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISI 956
P++G T+ QSR++L F++ K G S AV A ++G KV IN +W +++ T+ G K + GRR L + ++R FI+ + A +QVFR T+ E++ C + SN + GG+L R+GC+RR G+IK P ERLARIRRFLVE A R E+ G AVIVY+ E+FVHQ HGS YSYF +D+ V++ I
Sbjct: 159 PKKGEVWTQLQSRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRIN---NHWWDHRQLYETTAVGRGKTAKK--DDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNGSAGGLLSRLGCKRRRGRIKTPPLKAERLARIRRFLVEMVMAKRAEDAGLAVIVYVDESFVHQAHGSPYSYFPSDDDGVVQDGI 365
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.240e-29 Identity = 88/212 (41.51%), Postives = 124/212 (58.49%), Query Frame = 3
Query: 330 PRQGAFVTKDQSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFW-RKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKM-SNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISI 956
P++ T+ QSR++L F++ K G N AV A ++G KV IN +W +++ T+ G K + GRR L + ++R FI+ + A +QVFR T+ E++ C + SNR+ GG+L R+G +RR G+IK P ERLARIRRFLVE D A R E+ G AVIVY+ E+FVHQ HGS SYF +DE V++ I
Sbjct: 66 PKKDEVWTQLQSRMVLMLLFDLRKGGCCENEAVLQVARTFKIGHDKVRRIN---NHWWDHRQLYETTAVGRGKTAKK--DDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPCSYFPSDEDGVVQDGI 272
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.740e-28 Identity = 74/180 (41.11%), Postives = 109/180 (60.56%), Query Frame = 3
Query: 420 TAVHLAANHHRVGSRKVDDIN*FIRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKMSNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISI 956
T ++ A R+G+ KV + R W + +L ++G + + GRRV+ +R FI + +A +QVFR T+ ++++ G +MSNRAVGG+L R+G +RR G+IK+P ER RIR FLV+ D A R E+ G AVIVY+ E+FVHQ HGS YSYF +D+ V++ I
Sbjct: 2 THLYQVAKTLRIGTDKVLAV----RILWYYKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGI 177
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 129 bits (325), Expect = 5.000e-28 Identity = 85/202 (42.08%), Postives = 120/202 (59.41%), Query Frame = 3
Query: 360 QSRVILQTYFNMVKRGISPNTAVHLAANHHRVGSRKVDDIN*FIRAFW-RKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKM-SNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISI 956
+SR++L F++ K G S AV A ++G KV IN +W +++ +T+ G K + GRR L + ++R FI+ + A +QVFR T+ E++ C + SNR+ GG+L R+G +RR G+IK P ERLARIRRFLVE A R E+ G AVIVY+ E+FVHQ HGS YSYF +DE V++ I
Sbjct: 103 ESRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRIN---NHWWDHRQLYEITAVGRGKTAKK--DDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGI 299
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.680e-27 Identity = 69/157 (43.95%), Postives = 100/157 (63.69%), Query Frame = 3
Query: 489 IRAFWRKEIDLLTSSGNKCAMMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKMSNRAVGGMLHRIGCRRRPGKIKVPSPTPERLARIRRFLVEFDAAVREEERGDAVIVYI-ENFVHQLHGSTYSYFFTDESNVIKISI 956
+R W + +L ++G + + GRRV+ +R FI + +A +QVFR T+ ++++ G +MSNRAVGG+L R+G +RR G+IK+P ER RIR FLV+ D A R E+ G AVIVYI E+FVHQ HGS YSYF +D++ V++ I
Sbjct: 21 VRTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYIDESFVHQAHGSAYSYFPSDDTGVVQDGI 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4531.11389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4531.11389.1 >prot_H-paniculata_contig4531.11389.1 ID=prot_H-paniculata_contig4531.11389.1|Name=mRNA_H-paniculata_contig4531.11389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp MMKATNGGRRVLDDSPVAKVRGFISSKPDAQQQVFRCTLGEFIDAECGHKback to top mRNA from alignment at H-paniculata_contig4531:11361..13118+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4531.11389.1 ID=mRNA_H-paniculata_contig4531.11389.1|Name=mRNA_H-paniculata_contig4531.11389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig4531:11361..13118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4531:11361..13118+ >mRNA_H-paniculata_contig4531.11389.1 ID=mRNA_H-paniculata_contig4531.11389.1|Name=mRNA_H-paniculata_contig4531.11389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig4531:11361..13118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |