mRNA_H-paniculata_contig453.11385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig453.11385.1
Unique NamemRNA_H-paniculata_contig453.11385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 5.770e-140
Identity = 228/271 (84.13%), Postives = 249/271 (91.88%), Query Frame = 3 
Query:   42 MKSTCFLAAVAAVSSADAFFHSP-RMSGDVLAPFKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLSKESVAQ 851
            M+STC +AA AA+S ADAF  SP RMSGDVLAPF+AGKALKVISGLNKFDADLV+KVA+A A GGGT IDIACDP+LV AAK+VSNVP+CVSAV+PELFPACV AGAEM+ELGNFD FYDQG+TFSAEDVLEMTR+TR+LLPTT LSVTVPHTLDLD+QV LA EL+ LGVDVIQTEGKFSLDPSKGG+QGAIERAAPTLAAAHAIS+AV IPVMAASGL D+TAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIAS+MGL K S  +
Sbjct:    1 MRSTCVIAAAAALSCADAFCFSPARMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVE 271
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BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.890e-94
Identity = 168/266 (63.16%), Postives = 210/266 (78.95%), Query Frame = 3 
Query:   36 IAMKSTCFLAAVAAVSSADAFFHSPRMSGDVLAPFKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELV-LAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGL 830
            +A+K T   A VA++   + F     MSGD +APF+A KALK+ISG+  FD++LV KVA A   GG T +DIA DPELV LA ++  +V ICVSA+EPEL   CV AGA+M+ELGNFD FYDQG+ F+A+DV+ MT+ TR+LLP T LSVT+PH L +D+QVTLA+ LQ LGVDVIQTEGK+SLDPS GG+QG IERAAP LAA +AI+RAVDIPVM +SG+ ++TA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A +M L
Sbjct:    1 MALKVTA-AAVVASLCGVEGFMT---MSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDL 262
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BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: A0A0D6ACD4_9CHRO (IMP dehydrogenase/GMP reductase n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACD4_9CHRO)

HSP 1 Score: 272 bits (696), Expect = 8.760e-83
Identity = 145/236 (61.44%), Postives = 179/236 (75.85%), Query Frame = 3 
Query:  138 FKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLSKESV 845
            F   KALKVISGLN FD D V  V KA  +GG T +DIA D  L+   + + N+PICVSAV+PEL    V AGA+++E+GNFDSFY QGITF+AEDVL +TR+TR+LLP   LSVTVPHTL LDEQV LA+ L   G D+IQTEG  S +P+  GV G IE+A+PTLA AHAISRAV++PVM ASGL D+TAPMA++AGA G+GVGSAVNKLN +I M+AVVR++  S+  +  +V
Sbjct:   11 FATKKALKVISGLNNFDVDNVVAVCKAAELGGATFVDIAADVNLIKTVRQLINLPICVSAVKPELLANAVEAGADLVEIGNFDSFYAQGITFTAEDVLRLTRETRALLPNITLSVTVPHTLPLDEQVELAQALVTQGADIIQTEGGTSSNPNHSGVLGLIEKASPTLATAHAISRAVEVPVMCASGLSDVTAPMAISAGADGIGVGSAVNKLNDQIAMIAVVRSLVESLNSASVNV 246
[Close]
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92)

HSP 1 Score: 272 bits (695), Expect = 1.190e-82
Identity = 144/228 (63.16%), Postives = 179/228 (78.51%), Query Frame = 3 
Query:  150 KALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLS 833
            KALKVISGLN FD   V  V +A  +GG T +DIA D E++ A K   ++P+CVSAVEP+LF + V AGA++IE+GNFDSFY QGI FSAEDVL +TRQTR+LLP  +LSVTVPHTL LDEQV LA++L+A G D+IQTEG  S +P+  G+ G IE+A+PTLAAAHAISRAV IPV+ ASGL D+T PMA+A GA GVGVGSAVNKLN ++ M+AVVR++  ++  S
Sbjct:   14 KALKVISGLNNFDVANVVAVCRAAQLGGATFVDIAADVEIIKAVKESIDLPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALNRS 241
[Close]
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: A0A1E5QXG4_9CHRO (Uncharacterized protein n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QXG4_9CHRO)

HSP 1 Score: 271 bits (694), Expect = 1.670e-82
Identity = 145/229 (63.32%), Postives = 177/229 (77.29%), Query Frame = 3 
Query:  150 KALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLSK 836
            KALKVISGLN FD   V  V KA  +GG T +DIA D E++ A K   N+P+CVSAVEP+LF + V AGA++IE+GNFDSFY QGI FSAEDVL +TRQTR+LLP  +LSVTVPHTL L EQV LA+ L+A G D+IQTEG  S  P+  G+ G IE+A+PTLAAAHAIS+AV IPV+ ASGL D+T PMA+A GA GVGVGSAVNKLN E+ M+AVVR++  ++  S+
Sbjct:   14 KALKVISGLNNFDLANVKAVCKAAELGGATFVDIAADVEIIKAVKESINIPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLNLTRQTRALLPNILLSVTVPHTLPLHEQVELAQALEAAGADIIQTEGGTSSKPNHSGILGLIEKASPTLAAAHAISKAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDEVAMMAVVRSLVEALDTSE 242
[Close]
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: U5DGR7_9CHRO (Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DGR7_9CHRO)

HSP 1 Score: 269 bits (688), Expect = 1.310e-81
Identity = 145/231 (62.77%), Postives = 176/231 (76.19%), Query Frame = 3 
Query:  132 APFKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSM 824
            A F    ALK+ISGLN F+ D V  VA+A A GG T +DIA  PELV  A+   ++PIC SAVEPE F A VAAGA++IE+GNFD FY QG  F AE+VL +TR TR+LLP  +LSVTVPH L LD QV LAE+L   G DVIQTEG  S  P+ GGV GAIE+AAPTLAAAH ISRAVD+PV+ ASGL D+TAP+A+AAGA G+GVGSAVN+LNS++ MVA VR++ +++
Sbjct:    8 AAFARRNALKIISGLNNFNGDRVAAVARAAAAGGATFVDIAASPELVRRARQACDLPICTSAVEPEAFVAAVAAGADLIEIGNFDCFYAQGRRFEAEEVLALTRATRALLPQVMLSVTVPHVLPLDAQVQLAEDLVRAGADVIQTEGGTSSQPAHGGVLGAIEKAAPTLAAAHCISRAVDVPVLCASGLTDVTAPLAIAAGAAGIGVGSAVNRLNSKVAMVAAVRSLVAAL 238
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BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI)

HSP 1 Score: 270 bits (691), Expect = 4.100e-81
Identity = 151/247 (61.13%), Postives = 187/247 (75.71%), Query Frame = 3 
Query:  123 DVLAPFKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGL----SKESVAQ 851
            DVL PF   KA KVI+GL  F+ + V ++  A   GG T +DIACDPELV  A S+++VP+CVSAVEPELF   VAAGA M+E+GN+D FY +G TF AE+VL +TR+TR LLPT  LSVTVPHTL L +QV LAE L+  G D+IQTEG  S  P++ GV G IE+A+PTLAAA++ISRAV IPVM ASG+ D+TA MA+AAGA GVGVGSA+NKLNS I M+A  RAIA+++GL    S+E +AQ
Sbjct:   67 DVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLTSVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGLVSQESRERLAQ 313
[Close]
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: L1K0A3_GUITC (Uncharacterized protein ycf23 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K0A3_GUITC)

HSP 1 Score: 266 bits (681), Expect = 1.400e-80
Identity = 146/236 (61.86%), Postives = 181/236 (76.69%), Query Frame = 3 
Query:  120 GDVLAPFKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTV-LSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSM 824
            GDV+ PF+  +ALK+ISGLN FD   V  V +A   GG TL+DIACDP+LV  A+S+ NVP+CVS+V  E F A V AGA M+E+GN+DSFY QG  FSAE+VL +T +TR +L +++ +SVTVPHTL LDEQV+LA  L+A G  +IQTEG   + PS GG+QG IE+AAPTLAA  AIS+AV+IP MAASG+  ITAP+A+AAGA GVGVGSAVNKLNSEI M+A VR I  +M
Sbjct:    4 GDVMLPFEQRRALKIISGLNNFDEKSVASVVRAANAGGATLVDIACDPKLVQLARSIGNVPVCVSSVVAEDFLAAVKAGANMVEIGNYDSFYAQGRKFSAEEVLAITERTRDILGSSIPVSVTVPHTLPLDEQVSLALALEAAGASIIQTEGGMPMKPSSGGIQGLIEKAAPTLAATAAISKAVEIPTMAASGISAITAPLAIAAGASGVGVGSAVNKLNSEIAMLAAVREIYEAM 239
[Close]
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: UPI0019F06025 (DUF561 domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=UPI0019F06025)

HSP 1 Score: 266 bits (680), Expect = 2.100e-80
Identity = 145/238 (60.92%), Postives = 179/238 (75.21%), Query Frame = 3 
Query:  132 APFKAGKALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLSKESV 845
            A  + G+ALKVISGLN FD D V  V KA   GG T +DIA D +LV  AK ++++PICVSAVEPE+F  CV AGA++IE+GNFDSFY QG  F AE+VL +T+ TR LLP+ VLSVTVPH L LD+QV LAEEL   G D+IQTEG  S  P+  G  G IE+AAPTLA+A+AISRAV++PV+ ASGL  +TAPMA+AAGA G+GVGSA+NKL SEI M+AVVR++  ++     SV
Sbjct:    9 AVLEQGRALKVISGLNNFDRDRVATVVKAADQGGATFVDIAADADLVRMAKQLTDLPICVSAVEPEMFVTCVDAGADLIEIGNFDSFYAQGRQFEAEEVLALTQATRRLLPSIVLSVTVPHILPLDQQVQLAEELVLAGADIIQTEGGTSSSPAHAGTLGLIEKAAPTLASAYAISRAVNVPVLCASGLSTVTAPMAIAAGASGIGVGSAINKLTSEIEMIAVVRSLVEALATVSRSV 246
[Close]
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Match: K9YHE7_CYASC (Uncharacterized protein n=1 Tax=Cyanobacterium stanieri (strain ATCC 29140 / PCC 7202) TaxID=292563 RepID=K9YHE7_CYASC)

HSP 1 Score: 265 bits (677), Expect = 5.990e-80
Identity = 140/227 (61.67%), Postives = 174/227 (76.65%), Query Frame = 3 
Query:  153 ALKVISGLNKFDADLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPACVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVPHTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLAAAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLS 833
            ALKVISGLN FD   V  V KA  +GG T +DIA D E++ A K   N+P+CVSAVEP++F   V AGA++IE+GNFDSFY QGI FSAEDVL +TR+TRSLLP  +LSVTVPHTL LDEQV LA++L   G D+IQTEG  S +P+  G+ G IE+A+PTLAAAHAI+RAVD+PV+ ASGL D+T PMA+A    GVGVGSA+NKLN E+ M+AVVR++  ++  S
Sbjct:   19 ALKVISGLNNFDLANVMAVCKAAELGGATFVDIAADQEIIKAVKESINLPVCVSAVEPQVFVNAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRETRSLLPNVLLSVTVPHTLPLDEQVELAQKLVTAGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAIARAVDVPVLCASGLSDVTVPMAIAXXXSGVGVGSAINKLNDEVAMIAVVRSLTEALNNS 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig453.11385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP5_ECTSI5.770e-14084.13Uncharacterized protein ycf23 n=2 Tax=Ectocarpus T... [more]
A0A835YK10_9STRA1.890e-9463.16Uncharacterized protein ycf23 n=1 Tax=Tribonema mi... [more]
A0A0D6ACD4_9CHRO8.760e-8361.44IMP dehydrogenase/GMP reductase n=1 Tax=Geminocyst... [more]
UPI001882BC921.190e-8263.16DUF561 domain-containing protein n=1 Tax=Cyanobact... [more]
A0A1E5QXG4_9CHRO1.670e-8263.32Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
U5DGR7_9CHRO1.310e-8162.77Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=... [more]
A0A1Y1HWD8_KLENI4.100e-8161.13Uncharacterized protein ycf23 n=1 Tax=Klebsormidiu... [more]
L1K0A3_GUITC1.400e-8061.86Uncharacterized protein ycf23 n=2 Tax=Guillardia t... [more]
UPI0019F060252.100e-8060.92DUF561 domain-containing protein n=1 Tax=Leptolyng... [more]
K9YHE7_CYASC5.990e-8061.67Uncharacterized protein n=1 Tax=Cyanobacterium sta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig453contigH-paniculata_contig453:22815..27854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score421.4
Seed ortholog evalue3.4e-115
Seed eggNOG ortholog2880.D7FIP5
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Protein of unknown function (DUF561)
EggNOG OGs28MV1@1,2QUDA@2759
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-27_000540.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2227
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig453.11385.1prot_H-paniculata_contig453.11385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig453 24146..27813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930358.489703-UTR-H-paniculata_contig453:22814..241451622930358.489703-UTR-H-paniculata_contig453:22814..24145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig453 22815..24145 -
1691481256.5249217-UTR-H-paniculata_contig453:22814..241451691481256.5249217-UTR-H-paniculata_contig453:22814..24145Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig453 22815..24145 -
1622930358.590551-UTR-H-paniculata_contig453:27813..278541622930358.590551-UTR-H-paniculata_contig453:27813..27854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig453 27814..27854 -
1691481256.5914385-UTR-H-paniculata_contig453:27813..278541691481256.5914385-UTR-H-paniculata_contig453:27813..27854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig453 27814..27854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930358.5077033-CDS-H-paniculata_contig453:24145..242791622930358.5077033-CDS-H-paniculata_contig453:24145..24279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 24146..24279 -
1691481256.5355694-CDS-H-paniculata_contig453:24145..242791691481256.5355694-CDS-H-paniculata_contig453:24145..24279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 24146..24279 -
1622930358.5214326-CDS-H-paniculata_contig453:24689..248561622930358.5214326-CDS-H-paniculata_contig453:24689..24856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 24690..24856 -
1691481256.5446038-CDS-H-paniculata_contig453:24689..248561691481256.5446038-CDS-H-paniculata_contig453:24689..24856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 24690..24856 -
1622930358.5331683-CDS-H-paniculata_contig453:25211..252911622930358.5331683-CDS-H-paniculata_contig453:25211..25291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 25212..25291 -
1691481256.553436-CDS-H-paniculata_contig453:25211..252911691481256.553436-CDS-H-paniculata_contig453:25211..25291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 25212..25291 -
1622930358.5502245-CDS-H-paniculata_contig453:25771..259841622930358.5502245-CDS-H-paniculata_contig453:25771..25984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 25772..25984 -
1691481256.5618122-CDS-H-paniculata_contig453:25771..259841691481256.5618122-CDS-H-paniculata_contig453:25771..25984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 25772..25984 -
1622930358.5662446-CDS-H-paniculata_contig453:27192..273331622930358.5662446-CDS-H-paniculata_contig453:27192..27333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 27193..27333 -
1691481256.5718515-CDS-H-paniculata_contig453:27192..273331691481256.5718515-CDS-H-paniculata_contig453:27192..27333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 27193..27333 -
1622930358.5779414-CDS-H-paniculata_contig453:27693..278131622930358.5779414-CDS-H-paniculata_contig453:27693..27813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 27694..27813 -
1691481256.5822947-CDS-H-paniculata_contig453:27693..278131691481256.5822947-CDS-H-paniculata_contig453:27693..27813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig453 27694..27813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig453.11385.1

>prot_H-paniculata_contig453.11385.1 ID=prot_H-paniculata_contig453.11385.1|Name=mRNA_H-paniculata_contig453.11385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MKSTCFLAAVAAVSSADAFFHSPRMSGDVLAPFKAGKALKVISGLNKFDA
DLVTKVAKATAVGGGTLIDIACDPELVLAAKSVSNVPICVSAVEPELFPA
CVAAGAEMIELGNFDSFYDQGITFSAEDVLEMTRQTRSLLPTTVLSVTVP
HTLDLDEQVTLAEELQALGVDVIQTEGKFSLDPSKGGVQGAIERAAPTLA
AAHAISRAVDIPVMAASGLCDITAPMALAAGARGVGVGSAVNKLNSEIGM
VAVVRAIASSMGLSKESVAQEVDNAARVAEDVVA*
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mRNA from alignment at H-paniculata_contig453:22815..27854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig453.11385.1 ID=mRNA_H-paniculata_contig453.11385.1|Name=mRNA_H-paniculata_contig453.11385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5040bp|location=Sequence derived from alignment at H-paniculata_contig453:22815..27854- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACGTGTTTGCCTACGGGTTTTCCGATTCAGATTATCGCCATGAAGTCG
ACATGCTTCCTTGCTGCTGTGGCGGCTGTCTCTAGTGCTGACGCGTTCTT
CCATTCTCCTCGTATGTCTGGCGACGTCCTCGCGCCGTTCAAAGCCGGCA
AGGCTTTGAAGGTACGCTATGTTATAGACGACGAGAGAGGTATGGTGATC
TTTTGGACAATGTTCTAGATATTACTTTAAACTATAGTTTACTTTTGCGC
GCAATTAGTGATAGTGGGGATAGAGTTGCGGAGGACCATACCAACCCCTA
CTGCCTCAATTTAGCCGTCTTGAGACGTCGAGTTGATGTGACCAAGCGAA
GGTTGGTCTAGAGTAGAATAGGATCGGTTGTAGAGGTGACATCGATATTG
AAAAATGACGTATTTTTTCGTTTTCGACCCACGTAGTCGAGGCACCTGTA
ACGGCAACCCCTCCCCCTCCCTTATCCCATCGCGTGGCGTACCCTCGATC
CATGGCAAACGCTCACGAAAGGTGATCTCCGGTCTGAACAAATTTGACGC
CGATTTGGTAACGAAAGTGGCGAAGGCAACCGCTGTCGGGGGCGGAACAC
TCATCGATATTGCCTGCGACCCCGAACTTGTTCTCGCAGCGAAGTCGGTG
TCAAACGTACCGGTGAGCGCAATTTTTCTCAGGGCTTTCATCGTGGGTAA
TAAACCGGTTTCTGAAATATGACCAAATAAACGGCGTTTTGCGGTGTCGG
TATTAGTACGGTACACGCGGTATTCGGTAGTTAGAAATTGCGGTCGTTGC
TGGGATAGAACGTTTCGTCGCGATACTGCGCAGGAATCGTCAATCGCGGC
ATATTGCAGTAGAGTGAATGGGCGCGGTACGGTGATGTGATAACATTTCA
TGGGAAAACGTGGACTAGCCAAGACCTGGACCTTCGAGGGCTGACTGTTA
TGTCAGCATTCGCTCTGCTTAGAGCTATTCAATTTTATTCCTAACTGCTA
CAATTTGGGACACCTGCACCTGTGCCGGCGGGAAAGTAGCGAGACTGAAC
GGTAGTTGCGCGATATGATATTTGTGCTGAACAGCACTTGGATTGTACAA
GAATACGCTCAAGGGATATTGAATTGGGACGATAACGATGGAGCACGGTC
GGACCGATTGCTGTGTTTTTACCGTTTTTTCCCGAAAGAAAGGCCTATTA
TATCTAGTTGTTCCTCATTTTTCAATTTTGTTTTATGTTGTCACTCAAGG
TCATTCAAACGGTGCCGGGCTAGGGGGAGATGGGATTTCTACCTCTCTCT
CTCCTTGTATCTATCTATATATCTATAGAGAGAGAGAGAGAGAGAGTATA
AAAGGGAACACGAACACCGTTCAGTTGACGTCTAATAGGATAAGGTAGAG
TTGCTAATTAACCTTCAACTAGTTATTTTCTATTCAGCCGATAGTACAAA
TTGGTTAATCATTCCGTTGTTGATATGGTTATCGTCTCTTTGTGTTGGGC
TTTCACCTGTACTGCGAGAGGTGCCGTTGTCCAGATGTAACACCCCGCGA
GACTCATTATCTCTCTATATATATACCGTTCCTTCTCTTGCCACCCCTAA
CGCTGGTGGCCACAGTACTTCCTTCGTTGACAACAGGTAATACACATCGA
TAATTAATTCTCAGGTGACCACTACTGCCCGAGGTGGATGAAATTACGCC
TAAAATTCCACTCAAGACAACAGAATTGAGGATTTGGCTACCGTCCACCT
GTCGCCACGTACAAAAAGAGAGTCTTTGACCTCGATACATCTTCCAACTA
ACCCCAACCGGTGGGTGCCTTCTCGTATTGTTTATCGCTTCTTTTTGTTC
GTCTTACTTCGCTGCAAAAGATTTGCGTTTCGGCAGTGGAACCGGAGCTC
TTCCCAGCCTGCGTTGCCGCCGGCGCGGAGATGATAGAGCTCGGAAACTT
CGATTCATTCTACGACCAGGGAATCACCTTCTCCGCCGAAGACGTTCTCG
AGATGACCCGACAGACGCGGTCGCTGCTTCCGACGACAGTGCTCTCGGTA
ACGGTGCCGCACACGCTCGATCTCGACGAGCAGGCAAGCAAGATGTACCC
CTGCGCCGACACCTTTCTGTCGGGACCGAGGGGGGGGTCGCGTTTCACGG
AGTAGCAGGAGTACGGAGTATGGAGGGTGTTGTCTTGGATTTGACATTAG
TCGTAGTAGTACTGTATGTAAATTGGTTCGTTCACAGTGCAACCCCCTGC
GAGATGCACTGGAATTTTAATATTGGACCCAGAGGAGTTCCGTGTATGTA
TGTGTATGTATCCGTGTGTGTGTCCAGGTTGACCTTTGATGGGCGCGATC
ATTTATTGAAAAATGATGCCTTGTTGACTAGGGCCTTTGCCTTCAAGTTG
TGTGAGCTGATGCTTCGCCATAATCTTCTTGCGGATGTGTATGGATGTTT
GCTGTCCACGCAGAAGAGCATAGATATTCTACGTTTTCCTTTTGGATAGT
CGTGATGGAACAATATAACCGCCGTTGATTATGATGCGCGCGCGTCCATG
AACGCATTGCCAGGTGACTTTGGCAGAAGAGCTACAGGCGCTTGGAGTGG
ACGTTATCCAGACGGAGGGGAAATTCAGTCTTGACCCTTCCAAGTGAGCT
TTCTCGCGATCACGCAGCACGTTGTGATTTTTGCCCATCATGCTGTATCC
ACGACATAACAGCTGCGTATAAATGCTGTCCGTACCTCAACGGGGTCGGA
CCGTCGTGAGGTCGCGTTGATTCCGTCGTTTCTTTTCGCATTGACACGAA
AGAAAAAGAAGCATTGTTAGATCGCGTGCGCAATTCTTTTTTCAGATAAT
GCGATCAGTCGAGAAAATGCGATGGAGCCAACGGGTCCAATTAAAATCGG
TGAGGAGATATCCATCGCTACATTTATTCCGTGACACCGTAAAAAAAACT
GTTTTTCTCATCACATATCGTTTTTCTCTTGTGACACCTGCCAACCAGGG
GTGGAGTTCAGGGTGCCATTGAGCGAGCGGCTCCAACCCTCGCCGCCGCG
CACGCGATATCTCGGGCAGTAGACATTCCCGTCATGGCCGCCTCGGGACT
TTGCGACATCACTGCCCCTATGGCGTTAGCCGCGGGAGCCAGAGGCGTCG
GAGTGGGCTCGGCAGGTGAGGCATATTGCAATGCAGTGCGTGAGCCGAGT
GCAATTTTACTTGTACTGTTCGTGGGGAATCCGTTTTTTTATTAACGTTT
TGATGCGTTTTCACCTTACCTGGACCCGTGGATATTAATACGGGTTCTTC
GATACGAACAACGATGTTGCTTTGGGAGTGGCCAGATTGCATCGATCGTA
CCATAAATTACTCGCCTTTTGAAGATAAGCAGCGTCGGGCTAGTAGTACT
CTAATGGGAGGTTCCGTGGGAAGCCCTGGTGCTGCACCTTTTTAGGTCTG
GGACCACACAGGAATACCTGGTGGTATTACCTTGTCTTTTTTTGTTTGTT
CGTTTCCCGCGTGTGTACTCATGTTTCTCGTGTCAATCTGTACTCACTTT
GTCTCATGTTTTTTTCCGACAACAGTGAACAAGCTCAACAGTGAGATCGG
AATGGTAGCCGTAGTGCGGGCTATCGCGTCTTCGATGGGATTGTCCAAGG
AATCGGTCGCACAAGAGGTGGACAACGCTGCTCGCGTTGCCGAAGATGTT
GTCGCCTAAGCCAATTCAAAAGAACACACCATGATACGATGAGGACTCGG
GGTGCACGGAACTCATTTGCAGATGTTGGAGACTTCGGCGCAGCAGTGAA
CCTGCGTTTGCTGGGAAGATAACATGAGGACTGTATGGATCGGATAGGCC
GATAGTGTCGTTGGAGGACTTTTAGCAGCAGCGGGAAGCCGCGTCGTGCT
CGACAATGGCAATATGTTTGTTTACCCGACACCTATATATATATATATAT
ACATTGTTTCAAGTACAAGCACTAACGCGGGATAGAGAACGAGCGCCAGA
CTCGTCTAGAAAGAGGAAGTACAGTTACATGTTTATAAGTGGCACGTGCG
TGTGTGCGTGAGGGAGATGAAGAGAATGCACCCTCATTGGCGGGACATTT
GAAGCCGATAGACGGGTGCACGTTTATTTTCGTGTGGTGAGCTTGCTTGA
AAAAGTAGTGAGTGAGTAGTGTGCTTCTGATGCTACTACTGCGTTGTTAA
TGGAATTATTTGTGCTAGTTTTTCACAGACGCTAACATTTGCGGAAACTG
ATGTCATGAATAAATATAACATGTCGGTATAGGCGGTATTGATAATTTTT
TGTTGTCGCAGTAGTTGGGCAGGGAGAGAGATTGTGGGATACACTACGTA
TAGCATGAGATCATGGCGAAGAAAAGGAGGTGCGAGTTCTTTCATACAGT
AGTAGCGAAAAAATATTCGCGAAATAAGAAATTTAGCGGGTCAGGAAAAT
TGGAGTCGTGCGCTCACAAAATGTTAAGAAATTGCCACTAGGACTATTTC
TGTAAGAAAAAGTGTCGATCTTGCTGCGTTCTTTGGCTGCCTATTCAAAT
ATCGGTCGGCGGCGAATGCGCCAGCGATCGATGCGTGTATTCGTTTCGGC
GGGTAAAAATGACGGTATCGCTCGATGAGGGGATGAGGGATCGGACCCTA
ATTCTTTAGCAACGTGGTGGATATAAGAGACACAAACGAACAAGGTTCTC
GGGGATTTTGCGAATTCCTCTAGTCATCATGTTGATATCTTTGCATGTCA
GCGTCCACTTAAGAAAGGATTCACCGCGGTGGGTCGAAGGAAAAATCGCG
ACAAGAGGGGCAGAGAAGAAGAAACGCCCAGCTACAGACAGTATCGATCT
GTGTTCGCGAACACCAGGCAAAAATAGCGATCTAAGAAATTCAGCATATA
ACAGGAGCTTGAACATCTTCCAAGGCATAAACTAGGCACGTTTTTTTGTC
CGACTTTGTCCGTTTTTTCGCTTTCCGAAAAATGGAAATCGCAATGGTGA
GCAGAACAAATTTCACGACTAAGATCAAAGTGAACCAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig453:22815..27854-

>mRNA_H-paniculata_contig453.11385.1 ID=mRNA_H-paniculata_contig453.11385.1|Name=mRNA_H-paniculata_contig453.11385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig453:22815..27854- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCGACATGCTTCCTTGCTGCTGTGGCGGCTGTCTCTAGTGCTGA
CGCGTTCTTCCATTCTCCTCGTATGTCTGGCGACGTCCTCGCGCCGTTCA
AAGCCGGCAAGGCTTTGAAGATGAAGTCGACATGCTTCCTTGCTGCTGTG
GCGGCTGTCTCTAGTGCTGACGCGTTCTTCCATTCTCCTCGTATGTCTGG
CGACGTCCTCGCGCCGTTCAAAGCCGGCAAGGCTTTGAAGGTGATCTCCG
GTCTGAACAAATTTGACGCCGATTTGGTAACGAAAGTGGCGAAGGCAACC
GCTGTCGGGGGCGGAACACTCATCGATATTGCCTGCGACCCCGAACTTGT
TCTCGCAGCGAAGTCGGTGTCAAACGTACCGGTGATCTCCGGTCTGAACA
AATTTGACGCCGATTTGGTAACGAAAGTGGCGAAGGCAACCGCTGTCGGG
GGCGGAACACTCATCGATATTGCCTGCGACCCCGAACTTGTTCTCGCAGC
GAAGTCGGTGTCAAACGTACCGATTTGCGTTTCGGCAGTGGAACCGGAGC
TCTTCCCAGCCTGCGTTGCCGCCGGCGCGGAGATGATAGAGCTCGGAAAC
TTCGATTCATTCTACGACCAGGGAATCACCTTCTCCGCCGAAGACGTTCT
CGAGATGACCCGACAGACGCGGTCGCTGCTTCCGACGACAGTGCTCTCGG
TAACGGTGCCGCACACGCTCGATCTCGACGAGCAGATTTGCGTTTCGGCA
GTGGAACCGGAGCTCTTCCCAGCCTGCGTTGCCGCCGGCGCGGAGATGAT
AGAGCTCGGAAACTTCGATTCATTCTACGACCAGGGAATCACCTTCTCCG
CCGAAGACGTTCTCGAGATGACCCGACAGACGCGGTCGCTGCTTCCGACG
ACAGTGCTCTCGGTAACGGTGCCGCACACGCTCGATCTCGACGAGCAGGT
GACTTTGGCAGAAGAGCTACAGGCGCTTGGAGTGGACGTTATCCAGACGG
AGGGGAAATTCAGTCTTGACCCTTCCAAGTGACTTTGGCAGAAGAGCTAC
AGGCGCTTGGAGTGGACGTTATCCAGACGGAGGGGAAATTCAGTCTTGAC
CCTTCCAAGGGTGGAGTTCAGGGTGCCATTGAGCGAGCGGCTCCAACCCT
CGCCGCCGCGCACGCGATATCTCGGGCAGTAGACATTCCCGTCATGGCCG
CCTCGGGACTTTGCGACATCACTGCCCCTATGGCGTTAGCCGCGGGAGCC
AGAGGCGTCGGAGTGGGCTCGGCAGGGGTGGAGTTCAGGGTGCCATTGAG
CGAGCGGCTCCAACCCTCGCCGCCGCGCACGCGATATCTCGGGCAGTAGA
CATTCCCGTCATGGCCGCCTCGGGACTTTGCGACATCACTGCCCCTATGG
CGTTAGCCGCGGGAGCCAGAGGCGTCGGAGTGGGCTCGGCAGTGAACAAG
CTCAACAGTGAGATCGGAATGGTAGCCGTAGTGCGGGCTATCGCGTCTTC
GATGGGATTGTCCAAGGAATCGGTCGCACAAGAGGTGGACAACGCTGCTC
GCGTTGCCGAAGATGTTGTCGCCTAATGAACAAGCTCAACAGTGAGATCG
GAATGGTAGCCGTAGTGCGGGCTATCGCGTCTTCGATGGGATTGTCCAAG
GAATCGGTCGCACAAGAGGTGGACAACGCTGCTCGCGTTGCCGAAGATGT
TGTCGCCTAA
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