mRNA_H-paniculata_contig4527.11377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4527.11377.1
Unique NamemRNA_H-paniculata_contig4527.11377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4527.11377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4527contigH-paniculata_contig4527:4134..6932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930357.5901544-CDS-H-paniculata_contig4527:4135..42661622930357.5901544-CDS-H-paniculata_contig4527:4135..4266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4527 4136..4266 -
1691481256.1490643-CDS-H-paniculata_contig4527:4135..42661691481256.1490643-CDS-H-paniculata_contig4527:4135..4266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4527 4136..4266 -
1622930357.6083434-CDS-H-paniculata_contig4527:6880..69321622930357.6083434-CDS-H-paniculata_contig4527:6880..6932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4527 6881..6932 -
1691481256.1586869-CDS-H-paniculata_contig4527:6880..69321691481256.1586869-CDS-H-paniculata_contig4527:6880..6932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4527 6881..6932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4527.11377.1prot_H-paniculata_contig4527.11377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4527 4136..6932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4527.11377.1

>prot_H-paniculata_contig4527.11377.1 ID=prot_H-paniculata_contig4527.11377.1|Name=mRNA_H-paniculata_contig4527.11377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
KEGAGERARHSGRNEGKGIMTTQISSTIQEKVDGAAGTTGGSHMSLEDMV
FPPLETANNRL
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mRNA from alignment at H-paniculata_contig4527:4134..6932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4527.11377.1 ID=mRNA_H-paniculata_contig4527.11377.1|Name=mRNA_H-paniculata_contig4527.11377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2799bp|location=Sequence derived from alignment at H-paniculata_contig4527:4134..6932- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAGGAGCCGGAGAAAGAGCTAGACACAGCGGAAGAAACGAGGGGAA
AGGTAAGGAGGAACAATGGAGATAAAAATAAGGCTTGACTGCTGGTGGTG
TTAGTGGTGATGGTTTTGGAAGGTTGGTGCAGTCTCGTGACAATCCTTTG
CTTTTCGGCGACTAGTGATTGCTGACACTTCTCTCACTTCCCAATATCGT
CCCAGCCATCCACACCCAACAACCGTAGCAATGCTCGAGAGAGGCTGGAT
TCTAGATAATCACATCGGTTGTCGACTCCACCTGCCTGACTCCAACCAGG
CATACAAAAACACTTTGTTGCTCTAGTCTTGTTCGGCGACCTCACACTTC
AGCTACTGAGCTGCTGTTTTTGATGATTAGATCTGAATGTTCTTGGTGTT
TTTCTTGTCTAGCATATTAAAGTGCAGAGCGAATACCTGTAGAGCTATAG
CATGAGCTGAGATGCAACGAACCTCTTGACACAAAAATACCTACCGCTGT
CTATGGATGAGTCCCGGGGGGAAGATGGAGCTGTTAATCAACTGCTAGGT
TGACCAAGGACCCCCTTGACAGCTCGCCTTCCCTTCTTCACAATCGCAAC
ACACTCCCTGCATGTTGACAGCCAGCCCGACCAAGTGAGCACACTCAAAT
CCGCAGGATCGCACCGGTATGTGTACAGTACAGTATAGTTTCATGCCCCG
AAAGTGATCCTCTCGTGGGATGACCCATTGTAGAGGAATTTGTACGTAGA
CGGCCACAATTTGAGCAGGGCTGGGGGTTGTTTCGGAACGAAAGAGGTGT
CTGATGACCTTGATCTGATACAAGGTGTCGAGCGCTGCTGCAGTCGTTAT
AAGCGGAACCATGCCCATCTACTACAGTACCAGGTTGTGCAGTCCGTACC
AGGGTAATGTTACGAAATAAAAATCACCACAGCGACTTGCCGCCGAGAGG
AACGGGAGGCGTCGACGGTCCCGCCGCGATGCGGAGTCGCTCCTGGACGG
ATTTCTGGGGGAATAGGCTTCACTTTTCACACATTTTATCATCCTATTTT
GCCTTTTTGGCAGATGGTCCAGTGAAAACGTTTACAGCTACAGCAATTGT
GTACACGCGGTTATATACCAACTTGATCAATTTTGTGGCATCATTTTGAG
TGAAACAGTAGTAAAACAACACAAAAGTACAATCTCCACTTTAACGGCAA
AAGAAAACAAGATGAAAAATGGAGGTGTACGGCGAAGGAAAATCATGCTG
AAAAACAAATCTCCGGCTCACGGTAGAGAATACCTCTCGCCGATTTTTTC
GCATACGGCAATTTTCCCGCGAACCCAAAACATTTTCGCCGGCAAGCCGC
CGAGTGCGTCACAGTTCCGACAGAAACACCTTTTGTGACGTTTCCGGTGG
TTCCACACGAAAAGGTGCTTAACTTCCCACTCGCCCTGGTCTGTACTATC
TGCGCTGGACTGCCTATCTGAACAGCGGTGGTTCCCTATCTCCGTAATCC
TGTCGTAGGTGTTCGTCTCCCCTCATTTGGAGCTGGAGAATAGAAAGGTT
AGATGAGAATCAGTGCTAGAAGGGTTCGGGCCATAACTAGCCGGCGCATT
CTTCGCGAAAATCCGGAAATTTCCAGATTTTCGAGCTGTCATCAGGTGAC
GAAATTTATCCCAAAGAACTGGCAATTGTTGCTTTCGTGCTGCCCCTTGA
CAAGAACAAGGATAAGCGACTCTTTCGGGAAAATCTGAAAGTTTCCAGAC
TTGCAGATTTCTGTACGAAACGTGCGTGCTATTAATGGCCCTTGGACAAA
TTTCTTCAGGAATTAAGAAAATTAAGCACAAGATTCTCAACACACACACA
CACACACACACTACTAAGTGGTATCGTGTAGTCTACGATTGTAATGTTCA
GTTAATCCACAGCCAGAGTACCCATAGCTTGACACTTGAGTTGGAATTGT
ATGGCACGGATCCAAGCGTGCCGGTGGGCGCTTGGTTTTTGCCGGAGAGA
AATAGCACCAGCAGCACCAGCCAATCGATGACGACGTAGGTGCGCCGGGG
AGGCAAGAGGGCAAAGAAGACCAGCCTCGGGGTACTAGAGCCAGAACCGC
TACAATAACAACGTATTGGAGAACTTTGAGTCCGAATATTTGAGCCACAA
TAAGCTTGGAGCTTGAGGCTTGTAAGGTACTGCTGCTGTTCAGAAGTCGT
CAGACACGCTCCGCTTTGTATGTACAGTAGCTCTTGTACGGATGGTGTTA
GGTGGTGCATGTTGACAGGTGCCACAGAAACAAAAAGAAACACAAACGCC
GACTTTTCGCGGTCATGGCATGTTCACAGCAAAATGAAAACAAGCTCAAA
AATCATACTTCGCAACCTTGCAGTGTGAACAAGTCGGCTACAAGAAATAG
TACTGAATACTGCCCGAGAGAATAGAGCCGGAAACTTGCTCCAAAAAAGC
GCTTCTTAAGTCCTGTGCAAGTAGTGCTCCTAATCAAACATTACACAGGT
CGATTCCTTGCGTCCAATAGTGCAATGTCAACGAGCCTCTTTCGCGCCAC
AAGGAGGCATCTGTCGTCGTGAGTTCCTAATTTGACCACTGCTCCGCTCG
ACTGCCGGTCCCGGCTTTATCTGCTTCTCGTGACCCGTCAACCCAAATTG
TGTAAATTATCTCAAGGAATAATGACTACCCAGATCTCATCGACGATCCA
AGAGAAGGTCGACGGAGCAGCGGGGACGACGGGCGGAAGCCACATGAGCC
TCGAGGATATGGTGTTTCCTCCCTTGGAAACCGCCAACAACAGACTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4527:4134..6932-

>mRNA_H-paniculata_contig4527.11377.1 ID=mRNA_H-paniculata_contig4527.11377.1|Name=mRNA_H-paniculata_contig4527.11377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4527:4134..6932- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAGGAGCCGGAGAAAGAGCTAGACACAGCGGAAGAAACGAGGGGAA
AGAAAGAAGGAGCCGGAGAAAGAGCTAGACACAGCGGAAGAAACGAGGGG
AAAGGAATAATGACTACCCAGATCTCATCGACGATCCAAGAGAAGGTCGA
CGGAGCAGCGGGGACGACGGGCGGAAGCCACATGAGCCTCGAGGATATGG
TGTTTCCTCCCTTGGAAACCGCCAACAACAGACTGGAATAATGACTACCC
AGATCTCATCGACGATCCAAGAGAAGGTCGACGGAGCAGCGGGGACGACG
GGCGGAAGCCACATGAGCCTCGAGGATATGGTGTTTCCTCCCTTGGAAAC
CGCCAACAACAGACTG
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