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Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 233..262
e-value: 0.0079
score: 16.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 264..311
e-value: 4.1E-11
score: 42.9
coord: 827..874
e-value: 1.4E-10
score: 41.2
coord: 614..661
e-value: 2.3E-11
score: 43.7 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 302..336
e-value: 1.0E-5
score: 23.4
coord: 830..864
e-value: 3.6E-7
score: 28.0
coord: 617..651
e-value: 2.9E-7
score: 28.3
coord: 372..406
e-value: 2.7E-7
score: 28.4
coord: 337..367
e-value: 3.3E-6
score: 24.9
coord: 900..933
e-value: 6.5E-4
score: 17.7
coord: 442..476
e-value: 1.7E-6
score: 25.8
coord: 796..829
e-value: 1.8E-5
score: 22.6
coord: 233..266
e-value: 3.3E-4
score: 18.6
coord: 725..759
e-value: 1.8E-6
score: 25.7
coord: 512..546
e-value: 2.4E-6
score: 25.4
coord: 582..616
e-value: 3.0E-8
score: 31.3
coord: 267..301
e-value: 2.0E-6
score: 25.6
coord: 865..899
e-value: 8.3E-6
score: 23.7
coord: 478..511
e-value: 4.4E-7
score: 27.7
coord: 407..440
e-value: 6.5E-5
score: 20.9
coord: 760..793
e-value: 2.1E-8
score: 31.8
coord: 652..685
e-value: 1.6E-7
score: 29.1
coord: 547..581
e-value: 1.1E-4
score: 20.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 427..488
e-value: 3.8E-11
score: 42.9
coord: 708..736
e-value: 6.7E-5
score: 22.9
coord: 533..593
e-value: 1.9E-14
score: 53.5
coord: 322..383
e-value: 1.1E-12
score: 47.8
coord: 886..944
e-value: 3.5E-9
score: 36.6
coord: 746..806
e-value: 4.4E-13
score: 49.1 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 475..509
score: 11.542 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 650..684
score: 11.772 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 615..649
score: 11.509 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 370..404
score: 12.189 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 685..722
score: 8.528 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 898..932
score: 9.997 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 863..897
score: 11.257 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 440..474
score: 11.553 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 510..544
score: 11.477 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 545..579
score: 11.224 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 580..614
score: 12.31 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 723..757
score: 11.038 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 758..792
score: 12.858 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 793..827
score: 11.553 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 300..334
score: 11.082 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 335..369
score: 11.093 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 230..264
score: 10.26 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 405..439
score: 10.534 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 828..862
score: 12.178 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 265..299
score: 11.981 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 311..416
e-value: 3.0E-33
score: 116.7
coord: 186..310
e-value: 2.3E-27
score: 97.5
coord: 587..700
e-value: 2.7E-31
score: 110.3
coord: 858..960
e-value: 6.6E-23
score: 83.0 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 701..857
e-value: 7.4E-51
score: 175.3
coord: 417..575
e-value: 3.8E-50
score: 173.0 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 365..502
coord: 611..736
coord: 475..681
coord: 230..367
coord: 841..944
coord: 661..847 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig4524.11375.1 ID=prot_H-paniculata_contig4524.11375.1|Name=mRNA_H-paniculata_contig4524.11375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=990bp
MTSWYTNSAAKGAAHNIRHRSHLPKIATPVHRIWQARIQSGRACNEHVAE
NSDGVAELEVPVMPTTVHSNALPTGIEPARHTRPAFVEVPLGIRERSLSV
GSKWRRKVESAVPVHPWAKTRIAKKGLHVPPTLGKPRVFHALYEIGESPP
RPSLVDSEVRSTQRVAGSATQTGFRRRGPTPDGELTERNVNVQRLYMVQL
REAGTRRDWNAAGSVLEEALARPDSADVVHVQMFNAAIHAFAKCRKWQPA
LEILVRMRNNGVYPDTVTYNSAIAACGSDGQWEQALNLLQAMQIEGITPD
IVSYNSAMKACGDSDQWRTSLKLLRQMHAEGITPDIVSYSTVITACRNGG
EWEYALKVFRQMRAKGIMHNIVSYNSAIAACGDGGQWKQALDILREMQTE
GVTPDVVSYSTAITACGNSGQLEQALSLVNEAQERGITANAVMYNAAIKA
CGDGGQWNKSLRILQQMRTKGVFPNVMSYNTAMKACGDCGRWDKTLDLLQ
QMRAARIPPNVVSYNMAMKACRDGGEWEKALTILQQMQPKGIVPDVVSYN
TAITACGDGGQWHRALDFLPNMRAQGITPNVVTYNSVIKACGDGGQWEQV
MDVLGQMRSENITPDIVSYNTAMKACGDAGQISYALDLLQQMQVEGIAPD
VISYSTVIKAYGDVGEWEKALEVLRKMQTHGVARNVRCFNAAMAAFAVCG
SRYSWVQALETLQQMDEEGITPDVVSYNTAMKACGNGHQWERVFDLLQHM
KVRGIAPDVVSYTTVMKAYGDQGKWDKTLEVLQQMQAKGVAPSVMSYNTA
ITACGDGGTWERALELLRKMETNGVTPNVVTYNAAMKACGDSGEWEMSLH
LLQQMKAQGIAPNAVSYSAALNACGDIGEWEKSLDLLTQMRAEGITPNVV
SYNAALKAFREGGMLGKVLGLLRQMELEGIGPNIVSYNAVIWACREGAAR
GKTASHRLRENSSSLRGKGLAELASSRRNNSFHSSIGGY* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
|