mRNA_H-paniculata_contig4522.11371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4522.11371.1
Unique NamemRNA_H-paniculata_contig4522.11371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4522.11371.1 vs. uniprot
Match: A0A6H5LC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC44_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.080e-7
Identity = 55/151 (36.42%), Postives = 69/151 (45.70%), Query Frame = 1 
Query:   16 EEDEYAIPIVQDGRLVPSPLSTPRARSRARTEGHDPFQHDPYHVRDATSGEVSR--------------------GEASSSATDGAAPYSSAXXXXXXXXXXXXXXXXXXXXXXGGEPVKRQKGRFKLRDLGEVPLSSQPAAGSAAVPPAGG 408
            E+ E+AI IVQDG+LVPSPLSTPRAR R++TE  D  Q     V D     V+                     G    ++ D A  Y SA                        EP KRQ+GRFKLRD+ EV  S+  +  S++  PAGG
Sbjct:  107 EDAEHAIAIVQDGKLVPSPLSTPRARRRSQTED-DSIQQTTA-VSDGNIQAVANAXXXXXXXXXXXXXXXATTFGSTGGNSPDSATAYPSA----------------------AAEPAKRQRGRFKLRDIREV--SASVSTSSSSTSPAGG 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4522.11371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LC44_9PHAE2.080e-736.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4522contigH-paniculata_contig4522:7214..10297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007310.1
Exons2
Model size989
Cds size987
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930356.5967515-CDS-H-paniculata_contig4522:7213..72781622930356.5967515-CDS-H-paniculata_contig4522:7213..7278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4522 7214..7278 +
1691481255.7084436-CDS-H-paniculata_contig4522:7213..72781691481255.7084436-CDS-H-paniculata_contig4522:7213..7278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4522 7214..7278 +
1622930356.6206849-CDS-H-paniculata_contig4522:9374..102961622930356.6206849-CDS-H-paniculata_contig4522:9374..10296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4522 9375..10296 +
1691481255.7275915-CDS-H-paniculata_contig4522:9374..102961691481255.7275915-CDS-H-paniculata_contig4522:9374..10296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4522 9375..10296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4522.11371.1prot_H-paniculata_contig4522.11371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4522 7214..10296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4522.11371.1

>prot_H-paniculata_contig4522.11371.1 ID=prot_H-paniculata_contig4522.11371.1|Name=mRNA_H-paniculata_contig4522.11371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=329bp
QGHTSEEDEYAIPIVQDGRLVPSPLSTPRARSRARTEGHDPFQHDPYHVR
DATSGEVSRGEASSSATDGAAPYSSASAAAGAAGAAAASTAIAAAAAAGG
EPVKRQKGRFKLRDLGEVPLSSQPAAGSAAVPPAGGQAHPSQQSQTTGQQ
PGTVLDTSTNATVAAPATPATAAVEHPVSSGGSMVSTVTAAAVAPFDIQA
TMILLVDQNRHLLEKLATIAPEPPASAAGPGASAAHADGPASGLPSAAAT
GAGVLSSSSQMQTLTSATDNRQPFANNVALPGVDRGRTSSMTALTLQTPL
PPKPPTSHGGTSADRNVSPLMRETPAGWW
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mRNA from alignment at H-paniculata_contig4522:7214..10297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4522.11371.1 ID=mRNA_H-paniculata_contig4522.11371.1|Name=mRNA_H-paniculata_contig4522.11371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3084bp|location=Sequence derived from alignment at H-paniculata_contig4522:7214..10297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGACACACATCGGAGGAGGACGAGTACGCTATACCGATTGTCCAGGA
TGGAAGGCTTGTCCCGTGAGTCAAGCTTGTTGGTTATGTATCGTTGTCCC
TTAGTTTTTTCTTATCACCTGTATTCCCGGCCTGTCCCCTTCTGATGTTG
CTTTTTGTCATGCACCATCATGTTTTGATTGTTTGATGGGTCCTGTACTT
TGTTAGACGGCATTGACACATGCCCTGTCAACCAAAACCAACAACACAGA
CTCTGAACAAACTTGTAAGAACCAACAACCTTTGGAAATATTTCCATGTT
AACATGTAGTTCAGTGCGGTGAATGTTGGCTCTCGCTTGTCGTGTTCGGG
GTGTTTTCAGATTTATTATTTCAGCCAGTTGGGGATGAGAACAAGGACTA
AGTATTGATAGCATTTTTGTGTTGCATTCCAAAAAAAAGAGGCGTGTTGT
CGGTAATAATATCGAAGTGAAGATATCGTGGTATAGCACGGTATTTCGTA
ATCGGTACCGATACCGTGAAAAGTGTCCATGACCCCGGGTCTGATTAAAT
TCGAGTTGGTGTGTAAGTGCAATCTAGTACCATTATCATGCTTCACTGTG
ATTTATTTATTTATTTCGTTCCGGCTTCTCTCGTAAAAGTAGTTCAGCGT
GTTGTTTACTGAAATGGATTTTCCTGTGGGCAAGTTTTTTCAGTACTTTC
ACCTCACCGTCATAGATGTTCATCATATCTTGACCCCACCGGACGAGGCG
GCGATTGTAGTCAACTCAAAAATTGTATGTTGTGTGGTGTTTTTCTTTCA
CTCTACGGACTTCATGAGTCGTTAGGAAGGGTTCTCGGAATAAATGAGTC
GCTTGTGGGTTTTAGGGCAAGGCTTGGGTACTGAAATATTGTGCCAAACA
AATATCGTACCTTACCATGGGGGGGGGAACGAATACCGTTTACCGACATG
ATTCCGAAGAAATCATTTACCGTGCCGTTTGTTCATTTTTGAAATATTGT
GACCGAGAATACCCCCCCCCAAAAAAAAAAAACAAGCAACAATGCAGAGA
GACAGACGCGTACTTGGGTGTGTTGAATGAAAATAATTGTAGCCATTCAA
GCAGGCACATACGATCGAGGTTAGGGGATACTGGGGAATTGTGTGCAAAT
ATTATACTTGAGCCGAATCTATGCTTGGCACGGTGTTGTAGTTGAAATCC
CTATAAAGTTGTGAGCTGAAGTGAAACACGGACAGTACGGTGACTGACGC
TTGCCGCAGCTAGGTCCGCTAGTTCTGTCTAGGGGAGCTACTCGGCTTTG
GAGATGGAAGATGAGAAATTGAGCACGCAAGCAATGGGTATTTGGTAGCG
TTCAGTTGTTTTATTCTGTAGGGATGACCGTACTACAGTGCAGGATATAT
AAATTTCATGGGGTCAACAACTGGATTCGAAACGAAACTCGCAACCATTC
AGCTACGCAGCAGTTGCAAACTTGACAGGCAATCGGGGTGTGAAATCGTC
ACGGTATCCATCTGCACGTGTTGTCGCAGTAGGTTCCGGCGATGCCTGGC
TTGAGGCTCGCAAAACCTTACCGTTGAAAAATAGATAATATGGAATCGTT
GTCCAAGGGAAACATGTAGTTTATCTCTTTGCAATGAACTCAGTCCTGCT
CGACCCGGCTAACCCATCATAACCACCAAAACATCGATTCCGTCTCCCCT
GTCCTCGACCAATGCTTATTTCGAAACTTGAATCAAAATGGCCACCGGGT
AGTCTAGTTGAACCGAGTAAAGATGGTACGCTGTACTTCTCAGCCTGCCG
AATTAGATTGGAGGCTAGCCCACTCGTTCGACTCCTATTTTATCTTGGTT
GATTTGAAGTTGGTGTCCAGGTATTTTTTTAAACCAAGGCTTTGAGCGTT
GGCACGTAACAAAAACACATGTTCCTTTTGTCACCATGTTGTTTTTTTTA
CGTTGCAAATAATACACTATCGGAATCTACGGTCCAAGATAGAGAGTGTA
ATGCCTCGGTTCACCTCTTCTATCAGTTCCACCCGCTCAATCTTGGAGTA
TTCTTCTCCCTTTCGCGGGCTCTTATTTTTTGCCTGGAACACCCCCCCCC
CGCACGAGACACTTCTATTGTGATTGTGGATAAACCGCCTGTATTTCCTT
GTCTTGTACAGATCGCCGTTGTCGACACCACGCGCCCGAAGTCGCGCCCG
AACGGAAGGTCATGATCCGTTTCAGCACGATCCCTACCACGTGAGGGACG
CCACCAGTGGCGAGGTTTCGCGCGGCGAGGCTTCGAGCAGCGCCACGGAC
GGCGCCGCTCCCTATTCGTCGGCGTCTGCCGCGGCGGGCGCCGCAGGTGC
GGCGGCGGCCTCGACAGCAATAGCGGCAGCTGCAGCGGCTGGAGGAGAGC
CGGTGAAGCGCCAGAAGGGGCGTTTCAAGTTGCGAGATCTTGGAGAAGTT
CCGCTCTCTTCGCAGCCTGCTGCCGGAAGTGCGGCAGTGCCCCCCGCTGG
AGGACAAGCACATCCGTCGCAACAATCACAGACGACCGGGCAGCAACCTG
GGACTGTGCTCGATACTTCTACCAACGCCACGGTGGCAGCGCCAGCAACG
CCGGCGACGGCAGCGGTGGAGCACCCTGTGAGTTCGGGCGGGTCGATGGT
ATCGACGGTGACGGCGGCAGCAGTTGCACCGTTTGATATCCAGGCCACTA
TGATCCTGCTGGTGGACCAGAACAGGCACCTCCTAGAGAAGTTGGCGACA
ATAGCCCCCGAGCCGCCCGCGTCGGCCGCCGGTCCTGGTGCGAGCGCTGC
TCACGCCGACGGTCCTGCTTCTGGCCTCCCTTCGGCGGCGGCAACAGGAG
CAGGAGTGCTTTCTTCCTCTTCGCAAATGCAAACGCTGACGTCAGCGACA
GATAACCGGCAGCCTTTCGCCAACAATGTGGCTCTCCCTGGAGTGGACAG
GGGACGCACCAGCAGCATGACGGCGCTAACCCTCCAAACTCCGCTGCCTC
CAAAGCCCCCCACTTCTCACGGGGGAACGTCGGCAGACCGAAACGTATCG
CCGCTCATGCGAGAGACGCCCGCGGGGTGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4522:7214..10297+

>mRNA_H-paniculata_contig4522.11371.1 ID=mRNA_H-paniculata_contig4522.11371.1|Name=mRNA_H-paniculata_contig4522.11371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at H-paniculata_contig4522:7214..10297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGACACACATCGGAGGAGGACGAGTACGCTATACCGATTGTCCAGGA
TGGAAGGCTTGTCCCCAGGGACACACATCGGAGGAGGACGAGTACGCTAT
ACCGATTGTCCAGGATGGAAGGCTTGTCCCATCGCCGTTGTCGACACCAC
GCGCCCGAAGTCGCGCCCGAACGGAAGGTCATGATCCGTTTCAGCACGAT
CCCTACCACGTGAGGGACGCCACCAGTGGCGAGGTTTCGCGCGGCGAGGC
TTCGAGCAGCGCCACGGACGGCGCCGCTCCCTATTCGTCGGCGTCTGCCG
CGGCGGGCGCCGCAGGTGCGGCGGCGGCCTCGACAGCAATAGCGGCAGCT
GCAGCGGCTGGAGGAGAGCCGGTGAAGCGCCAGAAGGGGCGTTTCAAGTT
GCGAGATCTTGGAGAAGTTCCGCTCTCTTCGCAGCCTGCTGCCGGAAGTG
CGGCAGTGCCCCCCGCTGGAGGACAAGCACATCCGTCGCAACAATCACAG
ACGACCGGGCAGCAACCTGGGACTGTGCTCGATACTTCTACCAACGCCAC
GGTGGCAGCGCCAGCAACGCCGGCGACGGCAGCGGTGGAGCACCCTGTGA
GTTCGGGCGGGTCGATGGTATCGACGGTGACGGCGGCAGCAGTTGCACCG
TTTGATATCCAGGCCACTATGATCCTGCTGGTGGACCAGAACAGGCACCT
CCTAGAGAAGTTGGCGACAATAGCCCCCGAGCCGCCCGCGTCGGCCGCCG
GTCCTGGTGCGAGCGCTGCTCACGCCGACGGTCCTGCTTCTGGCCTCCCT
TCGGCGGCGGCAACAGGAGCAGGAGTGCTTTCTTCCTCTTCGCAAATGCA
AACGCTGACGTCAGCGACAGATAACCGGCAGCCTTTCGCCAACAATGTGG
CTCTCCCTGGAGTGGACAGGGGACGCACCAGCAGCATGACGGCGCTAACC
CTCCAAACTCCGCTGCCTCCAAAGCCCCCCACTTCTCACGGGGGAACGTC
GGCAGACCGAAACGTATCGCCGCTCATGCGAGAGACGCCCGCGGGGTGGT
GGATCGCCGTTGTCGACACCACGCGCCCGAAGTCGCGCCCGAACGGAAGG
TCATGATCCGTTTCAGCACGATCCCTACCACGTGAGGGACGCCACCAGTG
GCGAGGTTTCGCGCGGCGAGGCTTCGAGCAGCGCCACGGACGGCGCCGCT
CCCTATTCGTCGGCGTCTGCCGCGGCGGGCGCCGCAGGTGCGGCGGCGGC
CTCGACAGCAATAGCGGCAGCTGCAGCGGCTGGAGGAGAGCCGGTGAAGC
GCCAGAAGGGGCGTTTCAAGTTGCGAGATCTTGGAGAAGTTCCGCTCTCT
TCGCAGCCTGCTGCCGGAAGTGCGGCAGTGCCCCCCGCTGGAGGACAAGC
ACATCCGTCGCAACAATCACAGACGACCGGGCAGCAACCTGGGACTGTGC
TCGATACTTCTACCAACGCCACGGTGGCAGCGCCAGCAACGCCGGCGACG
GCAGCGGTGGAGCACCCTGTGAGTTCGGGCGGGTCGATGGTATCGACGGT
GACGGCGGCAGCAGTTGCACCGTTTGATATCCAGGCCACTATGATCCTGC
TGGTGGACCAGAACAGGCACCTCCTAGAGAAGTTGGCGACAATAGCCCCC
GAGCCGCCCGCGTCGGCCGCCGGTCCTGGTGCGAGCGCTGCTCACGCCGA
CGGTCCTGCTTCTGGCCTCCCTTCGGCGGCGGCAACAGGAGCAGGAGTGC
TTTCTTCCTCTTCGCAAATGCAAACGCTGACGTCAGCGACAGATAACCGG
CAGCCTTTCGCCAACAATGTGGCTCTCCCTGGAGTGGACAGGGGACGCAC
CAGCAGCATGACGGCGCTAACCCTCCAAACTCCGCTGCCTCCAAAGCCCC
CCACTTCTCACGGGGGAACGTCGGCAGACCGAAACGTATCGCCGCTCATG
CGAGAGACGCCCGCGGGGTGGTGG
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