mRNA_H-paniculata_contig4520.11365.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4520.11365.1
Unique NamemRNA_H-paniculata_contig4520.11365.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: D8LG07_ECTSI (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG07_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 4.500e-108
Identity = 164/230 (71.30%), Postives = 195/230 (84.78%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEK-WANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLSISPFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTVPAGVLLVDDINRLAKD 978
            ++V+VFGG+GFVGQNVCQAAL +GA+VVS+NRSGAP G +K W + VRWVQ DIF+P++YA ELSGA GVVSCVG FGSD+ +E++CGDATV ATEAAEKA VE  VFISAAGAQ  H ++KGYWKGKQKAE  IL+RFPDGGV+LR PGIYGDR  G VT+PLG LM+P EML +++PFAA+R++ PLE +LTPPV V+NV +VAA GALG VP GVLLVDDINRLA D
Sbjct:    8 KQVIVFGGSGFVGQNVCQAALRMGADVVSVNRSGAPTGKDKAWKDKVRWVQADIFKPEDYAVELSGAAGVVSCVGAFGSDQQVEKICGDATVAATEAAEKADVERFVFISAAGAQHDHPVMKGYWKGKQKAEKAILERFPDGGVVLRAPGIYGDRDVGPVTIPLGALMRPMEMLFNLAPFAAVRSSSPLEAMLTPPVAVENVSRVAAAGALGLVPGGVLLVDDINRLATD 237          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: A0A835ZEQ4_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ4_9STRA)

HSP 1 Score: 253 bits (647), Expect = 2.660e-76
Identity = 133/230 (57.83%), Postives = 167/230 (72.61%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLSIS-PFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTVPAGVLLVDDINRLAKD 978
            ++VVVFGG+GFVGQ+VCQAAL LG +VVS +RSG+P     WA+DV+W++GDIF+P++YA EL GATGVV+CVG FG+DE MER+CGDA V A EAA  A V + VF+SAAGA + HLLL+GY+ GK KAEA + + +PD GV LR   IYGDR    V +PLG +  P E +LS+  PFAALR + P E   TPP  V+ VG+ AA  ALG     +L V+DINRLA D
Sbjct:   76 EQVVVFGGSGFVGQSVCQAALALGCDVVSFSRSGSPEQAPSWASDVQWLKGDIFKPEDYAAELVGATGVVTCVGAFGTDEFMERVCGDANVAAAEAAAAARVPHFVFVSAAGAARAHLLLRGYYAGKAKAEAAVARLYPDTGVCLRPGAIYGDRVVRGVRVPLGAVFAPLERVLSLGGPFAALRDS-PFEAAFTPPADVRAVGRAAALAALGRADRALLSVEDINRLAAD 304          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: A0A4D9D7P2_9STRA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7P2_9STRA)

HSP 1 Score: 198 bits (503), Expect = 3.980e-55
Identity = 110/236 (46.61%), Postives = 147/236 (62.29%), Query Frame = 1
Query:  304 VFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDG-GVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLSISPFAALRTAGP-LEPVLTPPVCVKNVGKVAAGGALGTVPA--------GVLLVDDINRLAKDM 981
            V GG+G+VGQ+V QAAL  GA+ VSINRSG P     W + V+WV  DIF    +  EL GATGVVSC+G FGS+E ME++ GDA V+A E A K  V + V++S         LLKGY+ GK++AE  +L  FP G G++LR   +YG RA G ++LPL ++ +P E+L    PF +LR   P  + +L PPV V+ V  VAA GA+G            GVL VDDI R+A+++
Sbjct:   73 VLGGSGYVGQHVLQAALYRGADAVSINRSGIPNTSGSWLSQVKWVAADIFNSSAWNKELEGATGVVSCIGAFGSNEFMEKINGDANVLAAEVAAKMKVPHFVYVSTVENNLPDFLLKGYFHGKRRAEEAVLSSFPGGRGLVLRPSFVYGTRAVGPISLPLAVVGRPLELLFRFPPFPSLRQTLPGTQALLAPPVAVQAVASVAAAGAMGDTRVKAGEGAREGVLSVDDIVRVAREV 308          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: UPI001C4E58ED (uncharacterized protein At1g32220, chloroplastic-like isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E58ED)

HSP 1 Score: 188 bits (478), Expect = 8.740e-52
Identity = 105/230 (45.65%), Postives = 147/230 (63.91%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLSIS-PFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINRLAK 975
            +K++V GGNGFVG +VC+ AL  G  V S++RSG     + WAN V W QG++  PD++ + L+G T V+SCVGGFGS+ HM ++ G A + A  AA + GV+  ++ISAA    V+ LLKGY++GK+ AE  +L RFP GGVILR   ++G R  GSV +PLG++  P EM+L  + P   +   GPL   LTPPV V ++ KVA   A   V P G++ V  I R ++
Sbjct:   57 EKLLVLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSVQDSWANSVVWHQGNLLSPDSWKDALNGVTAVISCVGGFGSNSHMYKINGTANINAVRAAAEQGVKRFIYISAADFGLVNYLLKGYYEGKRAAETELLTRFPYGGVILRPGFMHGTRQVGSVKVPLGVIGSPLEMVLQYAKPLTQVPLVGPL---LTPPVSVTSIAKVAVRAATDLVFPPGIVDVYGIQRYSQ 283          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: A0A6A6MKN6_HEVBR (NAD(P)-bd_dom domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MKN6_HEVBR)

HSP 1 Score: 187 bits (474), Expect = 2.560e-51
Identity = 104/230 (45.22%), Postives = 142/230 (61.74%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLS-ISPFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINRLAK 975
            +K++V GGNGFVG ++C+ AL  G  V S++RSG     + WAN + W QGD+F PD++   L+G + ++SCVGGFGS+ HM ++ G A + A  AA + GV+  V+ISAA     + LL+GY+ GK+ AE  +L +FP GGVILR   IYG R+ GS+ LPLG++  P EM+L    P   L   GPL    TPPV V  V KVA   A   V P G++ V  I R  +
Sbjct:   46 EKLLVLGGNGFVGSHICREALDRGLSVASLSRSGRSSIRDSWANAITWHQGDLFSPDSWKEALNGVSAIISCVGGFGSNSHMYKINGTANINAIRAASEQGVKRFVYISAADFGLANYLLQGYYDGKRAAETELLTKFPYGGVILRPGFIYGTRSLGSIKLPLGMIGSPMEMVLQHAKPLKQLPLVGPL---FTPPVNVSAVAKVAVRAASDPVFPPGIIDVYGILRYTQ 272          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: UPI0018F84C0E (uncharacterized protein At1g32220, chloroplastic n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F84C0E)

HSP 1 Score: 187 bits (475), Expect = 2.900e-51
Identity = 106/230 (46.09%), Postives = 142/230 (61.74%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLS-ISPFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINRLAK 975
            +K++V GGNGFVG +VC+ AL  G  V S++RSG     + WAN V W QG++  PD+    L+G T V+SCVGGFGS  +M ++ G A + A  AA + GV+  V+ISA      + LL+GY++GK+ AE  +L +FP GGVILR   IYG R+ GSV +PLG++  P EM+L    P A L   GPL    TPPV V  V KVA   A   V P G++ VD I R ++
Sbjct:   62 EKLLVLGGNGFVGSHVCREALDRGLSVASLSRSGRSSLHDPWANSVTWYQGNLLSPDSLKEALNGVTAVISCVGGFGSQSYMYKINGTANINAIRAASEQGVKRFVYISATDFGLANYLLQGYYEGKKAAETEVLTKFPYGGVILRPGFIYGTRSVGSVKIPLGVIGSPMEMVLQHAKPLAQLPLVGPL---FTPPVNVTAVAKVAVRAATDPVFPPGIINVDGILRYSQ 288          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: A0A443NXX7_9MAGN (NADP-binding Rossmann-fold superfamily protein isoform 1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NXX7_9MAGN)

HSP 1 Score: 187 bits (474), Expect = 3.410e-51
Identity = 107/230 (46.52%), Postives = 146/230 (63.48%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLL-SISPFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINRLAK 975
            +K++V GGNGFVG +VC+ AL  G  V S+NRSG       WAN+V W QG++  PD++ + L+G T VVSCVGGFGS+ HM ++ G A + A  AA + GV+  V+ISAA    V+ LL+GY++GK+ AEA ++ +FP GG+ILR   IYG R  GS+ LPLG++  P EM+L +  P   +   GPL     PPV V +V KVA  GA   V P G++ V  I R  +
Sbjct:   58 EKLLVLGGNGFVGSHVCKEALEKGLSVASLNRSGRSNLQGSWANNVVWHQGNLLSPDSWKDVLNGVTSVVSCVGGFGSNSHMYKINGTANINAIRAAAEHGVKRFVYISAADFGMVNYLLQGYYEGKKAAEAELMSKFPYGGIILRPGFIYGTRQVGSMKLPLGVIGAPLEMVLQNAKPLNRVPLVGPL---FIPPVNVTSVAKVAVRGATDPVFPPGIVDVYGILRYGQ 284          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: A0A5N6R5D1_9ROSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6R5D1_9ROSI)

HSP 1 Score: 187 bits (474), Expect = 3.510e-51
Identity = 106/230 (46.09%), Postives = 143/230 (62.17%), Query Frame = 1
Query:  292 QKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLLS-ISPFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINRLAK 975
            +K++V GGNGFVG +VC+ AL  G  V S++RSG     + WAN V W QG++  PD++   LSG T V+SCVGGFGS+ +M ++ G A + A  AA + GV+  V+ISAA    V+ LL+GY++GK+ AE  +L +FP GGVILR   IYG R+ GSV +PLG++  P EM+L    P   L   GPL     PPV V  V KVA   A   V P G++ V  I R ++
Sbjct:   57 EKLLVLGGNGFVGSHVCREALDRGLSVASLSRSGRSSIHDSWANKVTWHQGNLLLPDSWREALSGVTSVISCVGGFGSNSYMYKINGTANINAIRAAAEQGVKRFVYISAADFGLVNYLLQGYYEGKRAAETELLTKFPYGGVILRPGFIYGTRSVGSVKIPLGVIGSPMEMVLKHAKPLTQLPLVGPL---FNPPVSVSAVSKVAVRAATDPVFPPGIIDVQGIQRYSQ 283          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: J3KUT0_ORYBR (NAD(P)-bd_dom domain-containing protein n=4 Tax=Oryzinae TaxID=1648021 RepID=J3KUT0_ORYBR)

HSP 1 Score: 187 bits (474), Expect = 4.170e-51
Identity = 106/229 (46.29%), Postives = 144/229 (62.88%), Query Frame = 1
Query:  286 APQKVVVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGSVTLPLGLLMKPAEMLL-SISPFAALRTAGPLEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINR 966
            +P K++V GGNGFVG +VC+ AL  G  V S+NRSG P   E WA+ V W QG++ +PD+  + + G + V+SCVGGFGSD +M ++ G A + A   A   G++  V++SAA    V+ LL+GY++GK+ AEA +L +F  GGVILR   I+G R  GSV +PLGL+  P +M+L S  P   L   GPL   LTPPV V +V KVA   A   V P G++ V  I R
Sbjct:   63 SPDKLLVLGGNGFVGSHVCKEALDAGFTVASLNRSGKPPISESWADKVIWNQGNLLEPDSLKDTMEGVSAVISCVGGFGSDSYMYKINGTANINAIRVASDKGIKRFVYVSAADFGLVNYLLQGYYEGKRAAEAELLSKFTYGGVILRPGFIHGTRRVGSVKVPLGLIGSPMQMVLQSAKPLTRLPLVGPL---LTPPVSVASVAKVAVRAATDPVFPPGIVDVYGIMR 288          
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Match: A0A7S2USW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USW7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.900e-51
Identity = 105/239 (43.93%), Postives = 148/239 (61.92%), Query Frame = 1
Query:  280 RAAPQKVVVFGGNGFVGQNVCQAA-LMLGAEVVSINRSGAPG--GGEKWANDVRWVQGDIFQPDNYANELSGATGVVSCVGGFGS-DEHMERLCGDATVIATEAAEKAGVENMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGDRAFGS-VTLPLGLLMKPAEMLLSISPFAALRTAGP-LEPVLTPPVCVKNVGKVAAGGALGTV-PAGVLLVDDINRLAK 975
            ++  QKVVV GGNG+VGQ VC+ A  M+  EVVSI+RSGAP   G EKW  ++ W +GD+ +   + + L GATGVVSC+G F S ++ ME   GD  + A + A+ AGV N VF+S         +L GY+KGK++AE  +L+ FP  GV+LR   +YG RA G  +++PL L+ KP +M+ S  PF  L +  P  + +L  PV V+ VG  AA GA+  +   G++   D+ RLAK
Sbjct:   23 QSTEQKVVVLGGNGYVGQQVCKMAKTMMNCEVVSISRSGAPNFDGAEKWTQEISWEKGDVLEASTWKDHLDGATGVVSCIGAFASTNDAMEYANGDTNIAAAKTAKAAGVANFVFVSTVENNLPEFVLAGYFKGKRRAEDQVLESFPQTGVVLRPSFVYGSRAVGKGISIPLWLVGKPMDMIFSTPPFEVLASTLPGAQAILAAPVPVETVGLCAAAGAVAKLGQTGIVSTKDMKRLAK 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4520.11365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG07_ECTSI4.500e-10871.30NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835ZEQ4_9STRA2.660e-7657.83NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A4D9D7P2_9STRA3.980e-5546.61NAD(P)-bd_dom domain-containing protein n=2 Tax=Mo... [more]
UPI001C4E58ED8.740e-5245.65uncharacterized protein At1g32220, chloroplastic-l... [more]
A0A6A6MKN6_HEVBR2.560e-5145.22NAD(P)-bd_dom domain-containing protein n=1 Tax=He... [more]
UPI0018F84C0E2.900e-5146.09uncharacterized protein At1g32220, chloroplastic n... [more]
A0A443NXX7_9MAGN3.410e-5146.52NADP-binding Rossmann-fold superfamily protein iso... [more]
A0A5N6R5D1_9ROSI3.510e-5146.09NAD(P)-bd_dom domain-containing protein n=1 Tax=Ca... [more]
J3KUT0_ORYBR4.170e-5146.29NAD(P)-bd_dom domain-containing protein n=4 Tax=Or... [more]
A0A7S2USW7_9STRA4.900e-5143.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4520contigH-paniculata_contig4520:11114..15346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.3
Seed ortholog evalue5.3e-89
Seed eggNOG ortholog2880.D8LG07
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010287,GO:0016491,GO:0016651,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.ubiquinone-6 biosynthetic process
EggNOG OGsCOG0702@1,KOG4288@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-21_005050.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1744
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4520.11365.1prot_H-paniculata_contig4520.11365.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4520 11264..14586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930356.0429945-UTR-H-paniculata_contig4520:11113..112631622930356.0429945-UTR-H-paniculata_contig4520:11113..11263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4520 11114..11263 +
1691481255.463648-UTR-H-paniculata_contig4520:11113..112631691481255.463648-UTR-H-paniculata_contig4520:11113..11263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4520 11114..11263 +
1622930356.1725812-UTR-H-paniculata_contig4520:14586..153461622930356.1725812-UTR-H-paniculata_contig4520:14586..15346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4520 14587..15346 +
1691481255.533129-UTR-H-paniculata_contig4520:14586..153461691481255.533129-UTR-H-paniculata_contig4520:14586..15346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4520 14587..15346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930356.0590556-CDS-H-paniculata_contig4520:11263..114101622930356.0590556-CDS-H-paniculata_contig4520:11263..11410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 11264..11410 +
1691481255.475585-CDS-H-paniculata_contig4520:11263..114101691481255.475585-CDS-H-paniculata_contig4520:11263..11410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 11264..11410 +
1622930356.079038-CDS-H-paniculata_contig4520:11656..118361622930356.079038-CDS-H-paniculata_contig4520:11656..11836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 11657..11836 +
1691481255.4854236-CDS-H-paniculata_contig4520:11656..118361691481255.4854236-CDS-H-paniculata_contig4520:11656..11836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 11657..11836 +
1622930356.0934465-CDS-H-paniculata_contig4520:12890..130011622930356.0934465-CDS-H-paniculata_contig4520:12890..13001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 12891..13001 +
1691481255.4947066-CDS-H-paniculata_contig4520:12890..130011691481255.4947066-CDS-H-paniculata_contig4520:12890..13001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 12891..13001 +
1622930356.1105764-CDS-H-paniculata_contig4520:13283..133961622930356.1105764-CDS-H-paniculata_contig4520:13283..13396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 13284..13396 +
1691481255.5042965-CDS-H-paniculata_contig4520:13283..133961691481255.5042965-CDS-H-paniculata_contig4520:13283..13396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 13284..13396 +
1622930356.1288195-CDS-H-paniculata_contig4520:13999..141051622930356.1288195-CDS-H-paniculata_contig4520:13999..14105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 14000..14105 +
1691481255.5137448-CDS-H-paniculata_contig4520:13999..141051691481255.5137448-CDS-H-paniculata_contig4520:13999..14105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 14000..14105 +
1622930356.1521976-CDS-H-paniculata_contig4520:14409..145861622930356.1521976-CDS-H-paniculata_contig4520:14409..14586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 14410..14586 +
1691481255.5233188-CDS-H-paniculata_contig4520:14409..145861691481255.5233188-CDS-H-paniculata_contig4520:14409..14586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 14410..14586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4520.11365.1

>prot_H-paniculata_contig4520.11365.1 ID=prot_H-paniculata_contig4520.11365.1|Name=mRNA_H-paniculata_contig4520.11365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
MLGLLSCSGRSLPMTIGLRALSTAGAPSPSSSQRSGSSEKGDGRAAPQKV
VVFGGNGFVGQNVCQAALMLGAEVVSINRSGAPGGGEKWANDVRWVQGDI
FQPDNYANELSGATGVVSCVGGFGSDEHMERLCGDATVIATEAAEKAGVE
NMVFISAAGAQQVHLLLKGYWKGKQKAEATILQRFPDGGVILRCPGIYGD
RAFGSVTLPLGLLMKPAEMLLSISPFAALRTAGPLEPVLTPPVCVKNVGK
VAAGGALGTVPAGVLLVDDINRLAKDM*
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mRNA from alignment at H-paniculata_contig4520:11114..15346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4520.11365.1 ID=mRNA_H-paniculata_contig4520.11365.1|Name=mRNA_H-paniculata_contig4520.11365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4233bp|location=Sequence derived from alignment at H-paniculata_contig4520:11114..15346+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTGCTCGCGTCTTGGACGGGCCTATACTTACTAGGCAAGAGGTCTTTT TTAAGAAATAACATCGTGTACGTTCCTATAGAGCTCCCAGCTAGTGGTGT GCTGATCTGTGGTGATCAACATCTGCGAAAAGAGACTGACTGGACGTATC ATGTTAGGTTTACTTAGCTGTAGTGGAAGGTCGCTGCCGATGACCATCGG CCTCCGAGCGCTCAGTACAGCAGGAGCTCCCTCTCCTTCATCAAGTCAAC GTAGTGGTAGCTCCGAGAAGGGCGATGGAAGAGCGGCCCCGCAGAAGGTA GGTGCACTCTTGCACACTTGTTCTGAATTGGATTGCTCTGCGTTACAGTA GAATCGAGTCAGCACTCTCGACCTGTGTACGTTGCAGTACAAGTGGGACC GTTACGGAACCTATCCTGGAGTCTCTTTAGCTTGTAGTAAATTCTCGCAA TTCCTCAACTTGTACCCCTAAAATTTAAAATTTCTCCCCGTGTATATCTA CTGAAACGCACATTTACGGAACACTACTATGAGGTGGTTCTAGGTGGTTG TCTTCGGCGGAAACGGCTTCGTAGGCCAGAACGTGTGTCAAGCCGCCCTC ATGCTGGGTGCCGAAGTCGTGAGTATCAACAGGAGCGGCGCCCCCGGTGG TGGTGAGAAATGGGCTAATGACGTTCGCTGGGTGCAAGGAGACATCTTCC AACCGGACAACTATGCCAATGAAGTGGGTAAATACTTCAGCTGTAGTTGC TAATGGATCTTACAGTCCAAGCTCGTTGCAGCTTTTGAATTTTATTTGAA ATGAGAAAGGCACAAAAGATCGTTACAACCTTGAGATGCCGATGGATTGT AGGAAACAAAAACACGTGATTGTCATGCACGAATTGCTCTATACGCTGTA CAAAATGGCGAATCGTCGACGCCGGAAGGCTACAGTGTGACGAGTTCCCT GCCGCCGATCCGCGCTACGAGAAAGCCATGCGCAACCTTGTCGTAGCGTC TACCTGATAAGTGTTATCGGATAGGTGTAGGTGGTCCTATAATATTAATA GGAAGGGTCGTTCTAAACAGGCCCTCACGGACCTACGCCCGAACGGGTAG GGTAGCTCGTGAATTGAGCATGATTGAAAGTCTAGTTGAGGTCTTTTAGT GAGTGCAACCCCCACACTGCACGTGGAAGCAGCGGGAAAGGTTTTTGCCT CAGCCTTCCGGGGGCAAAAAAGAAAAAAAAATACTGCCTACTTGGTTCGG CCGAACCGGGGTGGCGCCTACCTCGCAGAGGAATAAATAACTTTGTTCTG TTAAAGGAAATGTAGAACTACTTCGGTAGAAATACTTCGGTAGAAATACT TAAGTATGGAAGCATCGGATAAAGGGTTTGCCTTAGCCTTCTGGGGGTTA AAAAAAACAGAAAAACAAAAAAAACAGACACTTTTTTTCCCTTTTTTTTC CCCTTTTTCCCGATAATACCTTGAGATTAAGTCAGAAAAAATTATTTTCA TGAAATAGGGATAAGAAATATTGTAGTCAAAAATACCATATTTTTCTGAA TTTCGAAAAATTGTTGGAGGGAAAAACGGGGGGAAAGTGACACAAACGGG GTAAAAGAAAAAAACAAGGGAGAAGAGAAACAATAACCAATATTTAGAGC GGCCTTTAAAATTCGCGGTGAGAGAGCTCCGGGATCGTTGTCCATGCATA AGCTTTGATACGTTATTTTTTCTGCGACAAAGTGATAGATTTGTTTCCCA CGTACCTGCTTTTGTATGCACCCTCAGTTGTCAGGCGCAACGGGGGTAGT CAGCTGTGTAGGCGGCTTTGGGTCTGACGAGCACATGGAGAGACTGTGCG GAGATGCGACAGTCATAGCGACAGAGGCAGCAGAGAAGGTGGGTTGCCTA TTGCTGGACTCAAGTATAATCTTGCATCCGCACCAACGTTTTGTGCGGGT ACTCACCACCCGTCTTACAGTGTAAGCAAGACATGTTGGTGTCCTGTACG AGAGCAACGAAATAATTTTCCAAATATCGTTGTGTCGTCTACGGCATTTT TTCTTTTTCTGAAGTGAAATCCATGCCCTCTCAACATCAACACCCTGCCA CTACCCTCGCAGTTGAAGCTGTGCAACCGCCCCCTCTCCTCCCGCGTTCC AAAACCCCGGCCATTCGCAGGCTGGTGTAGAAAACATGGTTTTTATTTCT GCCGCTGGGGCTCAGCAAGTACACTTGCTTCTCAAGGGATACTGGAAAGG GAAGCAGAAAGCCGAAGCCACAATCCTGCAAAGGTCGGTTTTTGCTATTC AAGTAGCACCCGCGTCTGGTGGTATAGAGTACACGTTCGGAGGAATGTTT GCTAGACCAGATGTGCGTGCTACACCCCTCGTGATAGAGTGGATGGATTC CAATGTCACAGCGTATGTTACCTAGCGGTTACATGAGATGGATACCACAC ACGCATCGTTTGGTTATGTTCGACGAAAGGAGCGCAAATATTTTTCAAGT CCGCAGTACTTTTCGCGGACCACACTCTGCTACGTTTTTTGTCTGTAGAG GTTTGACGTTCCTCAGGAGCGGCTAGTTCTCTAGTTTGCCCCGAGTTCTA TACTGCGCCAGATTCATATTATCCACTACTACGCACTCGTGTGCGTGGAC ACTCATGTTACGCTTCTGTTATTGCTGAGAGAAGTCACAAATACGAAACA GATTGCCAAAAAAATGTTGAAGATGTCCCGGTTTCGTCGTCATCGTCAAG ATGGACCGTCTGTTACCGTCGCAATATCGAAACGCTTTGAATCAAGCCAT AACGACCAGCAGGTTGTGAATAGTGCGCATAAGCCATGAGGACGATTATA AAACACTGTTAATTGTTTCGCGGTACTTGCTGAAAGGTTTCCAGATGGAG GGGTGATTCTGCGCTGTCCTGGGATCTACGGAGACCGTGCGTTCGGGTCA GTAACTCTGCCTTTGGGTTTACTGATGAAGCCAGCAGAGATGGTGAGAGC CCGGCGAGAGTATCCACTCGAAATATCTGCGTTATGTAGATTTTGAGTGC TTGCAATTTTTCTTGTTATTTTTCTTGGCGTACGACTGCGCCGTGGATAC CCACCTCCCCCCTGTCCCTCGTTGGGCGGAGACTCGTTGTCTCAACTGAT GGGATCAAAATGCATCAACTAGTCTGCATGGTGACGCTTTTTGGCTCTCC TTATTGTCCTCCCAATGACCTCTCACTGCTCGCTTTACTCTACCACTTGT GTTGCCATCACCGATTTCCGCTCTCCCTGTTGTCTCAATTTTCCAGCTGT TGAGTATATCGCCGTTTGCGGCTCTTCGAACCGCCGGTCCTCTGGAGCCC GTGCTAACACCTCCCGTGTGCGTGAAAAATGTGGGCAAAGTGGCCGCGGG GGGCGCACTGGGCACTGTGCCCGCGGGGGTTCTGCTCGTGGATGATATAA ACCGCTTGGCGAAGGACATGTGATATTTTTTAAGTAATCCTCACGTTTTT GGTTTTGAGGCAATTTATTTTTGTCCTATTGTGCGCCTCAAAGGTCGTGT TGGCGTTCATGAAGTCGGTGGGATTTTGTTGGCCGGCAATAGGTGGCGGG GATATTTTGGGTTCTATAATGGAAGAAATTTTTGAGGTTGGTGTGTTGTA CTGTGAGTGTTGTGTGACTTCGAGTATACTGTGTGGAAGGAGGCGTTTGT GCGATTTTTAAATTCTGTTGGTGCTATACACGAAGTGAAGCGCCCCTCGG AACTGGTGGTGTTGGGTTCTCTTAGCTTGATCATTTGGTGACCTTCTACT TGCTTAGACTAGAGTTCGGTAGCTGCAGGTTCGTTCACGGAACAGCCGAT CCTTGAAATTGAGGATCAAACGGTTTTGGTAAATTTGCCAACAAAAATTG CTGAATCATGCTAAACGGTCTAAGACTGCGTGAAAGCGCATGACGTTAGC GTTTGCGGGCCCTTGTTCCTTTTTTAATCGAGCCGTTGGCCGCCGAGATA TGTGCGAATTACGAACAAAAATGTGTAGTCGGTAATGATTTTCCTCGTTT TTTTTTATTTCGCGTCATCTCGAGATTGGCTTGTCCAATTCAATCAAAAG TAGGTGCGTTCGATAGCTATTGAAGATAAGCATACTTTCCCGCCGTTTCT TGCGTTTGGCTTGTCAACAAAAGTTATGTCTCAAATGCTTTTTCCTCAAT GAGAAGATCGACCCTCATTTTTGAGGATCGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4520:11114..15346+

>mRNA_H-paniculata_contig4520.11365.1 ID=mRNA_H-paniculata_contig4520.11365.1|Name=mRNA_H-paniculata_contig4520.11365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig4520:11114..15346+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGGTTTACTTAGCTGTAGTGGAAGGTCGCTGCCGATGACCATCGG
CCTCCGAGCGCTCAGTACAGCAGGAGCTCCCTCTCCTTCATCAAGTCAAC
GTAGTGGTAGCTCCGAGAAGGGCGATGGAAGAGCGGCCCCGCAGAAGATG
TTAGGTTTACTTAGCTGTAGTGGAAGGTCGCTGCCGATGACCATCGGCCT
CCGAGCGCTCAGTACAGCAGGAGCTCCCTCTCCTTCATCAAGTCAACGTA
GTGGTAGCTCCGAGAAGGGCGATGGAAGAGCGGCCCCGCAGAAGGTGGTT
GTCTTCGGCGGAAACGGCTTCGTAGGCCAGAACGTGTGTCAAGCCGCCCT
CATGCTGGGTGCCGAAGTCGTGAGTATCAACAGGAGCGGCGCCCCCGGTG
GTGGTGAGAAATGGGCTAATGACGTTCGCTGGGTGCAAGGAGACATCTTC
CAACCGGACAACTATGCCAATGAAGTGGTTGTCTTCGGCGGAAACGGCTT
CGTAGGCCAGAACGTGTGTCAAGCCGCCCTCATGCTGGGTGCCGAAGTCG
TGAGTATCAACAGGAGCGGCGCCCCCGGTGGTGGTGAGAAATGGGCTAAT
GACGTTCGCTGGGTGCAAGGAGACATCTTCCAACCGGACAACTATGCCAA
TGAATTGTCAGGCGCAACGGGGGTAGTCAGCTGTGTAGGCGGCTTTGGGT
CTGACGAGCACATGGAGAGACTGTGCGGAGATGCGACAGTCATAGCGACA
GAGGCAGCAGAGAAGTTGTCAGGCGCAACGGGGGTAGTCAGCTGTGTAGG
CGGCTTTGGGTCTGACGAGCACATGGAGAGACTGTGCGGAGATGCGACAG
TCATAGCGACAGAGGCAGCAGAGAAGGCTGGTGTAGAAAACATGGTTTTT
ATTTCTGCCGCTGGGGCTCAGCAAGTACACTTGCTTCTCAAGGGATACTG
GAAAGGGAAGCAGAAAGCCGAAGCCACAATCCTGCAAAGGCTGGTGTAGA
AAACATGGTTTTTATTTCTGCCGCTGGGGCTCAGCAAGTACACTTGCTTC
TCAAGGGATACTGGAAAGGGAAGCAGAAAGCCGAAGCCACAATCCTGCAA
AGGTTTCCAGATGGAGGGGTGATTCTGCGCTGTCCTGGGATCTACGGAGA
CCGTGCGTTCGGGTCAGTAACTCTGCCTTTGGGTTTACTGATGAAGCCAG
CAGAGATGGTTTCCAGATGGAGGGGTGATTCTGCGCTGTCCTGGGATCTA
CGGAGACCGTGCGTTCGGGTCAGTAACTCTGCCTTTGGGTTTACTGATGA
AGCCAGCAGAGATGCTGTTGAGTATATCGCCGTTTGCGGCTCTTCGAACC
GCCGGTCCTCTGGAGCCCGTGCTAACACCTCCCGTGTGCGTGAAAAATGT
GGGCAAAGTGGCCGCGGGGGGCGCACTGGGCACTGTGCCCGCGGGGGTTC
TGCTCGTGGATGATATAAACCGCTTGGCGAAGGACATGTGACTGTTGAGT
ATATCGCCGTTTGCGGCTCTTCGAACCGCCGGTCCTCTGGAGCCCGTGCT
AACACCTCCCGTGTGCGTGAAAAATGTGGGCAAAGTGGCCGCGGGGGGCG
CACTGGGCACTGTGCCCGCGGGGGTTCTGCTCGTGGATGATATAAACCGC
TTGGCGAAGGACATGTGA
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