mRNA_H-paniculata_contig4520.11364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4520.11364.1
Unique NamemRNA_H-paniculata_contig4520.11364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4520.11364.1 vs. uniprot
Match: A0A6H5JRQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.650e-34
Identity = 109/235 (46.38%), Postives = 149/235 (63.40%), Query Frame = 1 
Query:    4 QDALPVQVLSLKARLKGALESIGCEGQTAGR------ALERVTREHISLGEGLGAVEKELVMARKEAARSAVDSLRLVQEKRARAEARRVRHFEQLGEAKRAAAVARAEAKAERENRAEAMTECRNTKELLEAARSSCSVTEEVSKTLRRDMETLKASGEVEKLRKALTETETLLDQERARFDAAKREGAEELQLCERKRELEVFAANEAAAVLERVAKLQLERLPEHQQQLLQA 690
            + +LPVQVL+LKARL G L   G +G  +G       AL  V REH +L E LG +E+EL+ AR++  + A   L+  Q+KRARAEARRVRHFEQLGEA+RAAAVA+AEA+A R   A+  TE ++ +++LE ARS+ S  ++ +   +++    +A G   KL +     ++ L +       A R   +  +LCERKRELEV AA   A   ER A+ Q++RLPEHQQQLLQA
Sbjct:  181 EPSLPVQVLTLKARLDGLLLG-GHDGVDSGHQKTVTEALTSVKREHAALRECLGDIERELLTARRKVEQDAASRLQAAQQKRARAEARRVRHFEQLGEARRAAAVAKAEAEALRARLADGATELQHMRDMLETARSAASAAQDRADQCQKEAAVAEA-GFCSKLSRT---HDSRLCKSALLRSLAFRLPLDGAKLCERKRELEVDAATRVAEARERAAEEQMKRLPEHQQQLLQA 410
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BLAST of mRNA_H-paniculata_contig4520.11364.1 vs. uniprot
Match: D8LEG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.810e-34
Identity = 107/233 (45.92%), Postives = 137/233 (58.80%), Query Frame = 1 
Query:   10 ALPVQVLSLKARLKGALESIGCEGQTAGR------ALERVTREHISLGEGLGAVEKELVMARKEAARSAVDSLRLVQEKRARAEARRVRHFEQLGEAKRAAAVARAEAKAERENRAEAMTECRNTKELLEAARSSCSVTEEVSKTLRRDMETLKASGEVEKLRKALTETETLLDQERARFDAAKREGAEELQLCERKRELEVFAANEAAAVLERVAKLQLERLPEHQQQLLQA 690
            +LPVQVL+LKARL G L + G +G  +G       AL  VTREH +L E LG VE+EL+ AR++  + A   L+  Q+KRARAEARRVRHFEQLGEA++ A VA+ EA+A R   A+  TE R+ +++LE ARS+ S  ++                                     R D  ++E A   +LCERKRELEV AA  AA   ER A+ QL+RLPEHQQQLLQA
Sbjct:   37 SLPVQVLTLKARLDGLLRA-GHDGVDSGHHLTVTEALTSVTREHAALRECLGDVERELLTARRKVEQDAASRLQAAQQKRARAEARRVRHFEQLGEARKTAVVAKTEAEALRARVADGATELRHARDMLETARSAASAAQD-------------------------------------RADQCQKE-ATVAELCERKRELEVDAATRAAEARERAAEEQLKRLPEHQQQLLQA 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4520.11364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRQ9_9PHAE2.650e-3446.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEG2_ECTSI3.810e-3445.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4520contigH-paniculata_contig4520:504..3267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004820.1
Exons6
Model size691
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4520.11364.1prot_H-paniculata_contig4520.11364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4520 504..3267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.9087193-CDS-H-paniculata_contig4520:503..6261622930355.9087193-CDS-H-paniculata_contig4520:503..626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 504..626 -
1691481255.398631-CDS-H-paniculata_contig4520:503..6261691481255.398631-CDS-H-paniculata_contig4520:503..626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 504..626 -
1622930355.9217231-CDS-H-paniculata_contig4520:1377..14851622930355.9217231-CDS-H-paniculata_contig4520:1377..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 1378..1485 -
1691481255.4176521-CDS-H-paniculata_contig4520:1377..14851691481255.4176521-CDS-H-paniculata_contig4520:1377..1485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 1378..1485 -
1622930355.9389904-CDS-H-paniculata_contig4520:1716..18571622930355.9389904-CDS-H-paniculata_contig4520:1716..1857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 1717..1857 -
1691481255.4272835-CDS-H-paniculata_contig4520:1716..18571691481255.4272835-CDS-H-paniculata_contig4520:1716..1857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 1717..1857 -
1622930355.9533844-CDS-H-paniculata_contig4520:2239..23981622930355.9533844-CDS-H-paniculata_contig4520:2239..2398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 2240..2398 -
1691481255.4360492-CDS-H-paniculata_contig4520:2239..23981691481255.4360492-CDS-H-paniculata_contig4520:2239..2398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 2240..2398 -
1622930355.969359-CDS-H-paniculata_contig4520:2809..29441622930355.969359-CDS-H-paniculata_contig4520:2809..2944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 2810..2944 -
1691481255.4449542-CDS-H-paniculata_contig4520:2809..29441691481255.4449542-CDS-H-paniculata_contig4520:2809..2944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 2810..2944 -
1622930355.9912302-CDS-H-paniculata_contig4520:3243..32671622930355.9912302-CDS-H-paniculata_contig4520:3243..3267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 3244..3267 -
1691481255.454139-CDS-H-paniculata_contig4520:3243..32671691481255.454139-CDS-H-paniculata_contig4520:3243..3267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4520 3244..3267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4520.11364.1

>prot_H-paniculata_contig4520.11364.1 ID=prot_H-paniculata_contig4520.11364.1|Name=mRNA_H-paniculata_contig4520.11364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
TQDALPVQVLSLKARLKGALESIGCEGQTAGRALERVTREHISLGEGLGA
VEKELVMARKEAARSAVDSLRLVQEKRARAEARRVRHFEQLGEAKRAAAV
ARAEAKAERENRAEAMTECRNTKELLEAARSSCSVTEEVSKTLRRDMETL
KASGEVEKLRKALTETETLLDQERARFDAAKREGAEELQLCERKRELEVF
AANEAAAVLERVAKLQLERLPEHQQQLLQA
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mRNA from alignment at H-paniculata_contig4520:504..3267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4520.11364.1 ID=mRNA_H-paniculata_contig4520.11364.1|Name=mRNA_H-paniculata_contig4520.11364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2764bp|location=Sequence derived from alignment at H-paniculata_contig4520:504..3267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACAGGACGCCTTGCCCGTGCAGGTTGTGCAGTAGCACCGACGAGATGG
CACCCAAGAGGATGGATAGTGTATCTATGCCGTATTTTATTGGAGGGAAA
ATATGAAGATTTGATAGGTACCGTTGAAAGAGCCTTGAGGCGGGATGAAT
GATGCAACAAATACATTGATGACCCACGAAGTTTTAAAAAAGACAAAAAT
CCAAGTCGGTGATTCCATTTCGGGGCCCGAGTTCGATGTTTCGGTCGTCT
TGGTTGCGCAGAGATAGCGGTTGTGCGAACATCGTGACCTCTTATATCCA
CGAAAACGTGTCGCCGTCTCAAGGTACTAAGTCTGAAGGCTCGCCTAAAG
GGTGCACTGGAAAGCATTGGCTGCGAAGGTCAGACAGCGGGGAGGGCATT
GGAGAGGGTAACACGAGAACACATATCGCTAGGCGAAGGCTTAGGTGCTG
TAGAGAAGGTTCGTGCAACACCGTGGAAAAGAGCTTGGTGATAGGCGTTT
GTCGTGCAAATTACGCTGTTGGTAGCATTTGAGCTGGGGCAACCCTAACA
AGGGACTGAAGCGGGTACTGATTGCTGCTCGCTGTCGATGTCGTCTAGTA
TATGCCTCAAACGAGCCATAAAAGTACTGTATGACTTACGACGCCACACA
TTGTCTACTGTCGCTCAATATTATTTGGGAAGAGGCAGGCACAGCAGGCA
CAACAGGTGACAGTTTCACTGATTTGGGAAACGGCAAAGCAAAGAAGGAT
GGCTCCAGAAAGTGGAGACGGTAGGGTAGATTTATCCCTCGAAGGAAAGA
ACAGCCCCCCCCCCCCTCCCCCCCACGTATGAGCTCCGTTTGTCGTTTAA
CTTCTGCTGTTTTATTAAGGAGCTGGTAATGGCAAGAAAAGAAGCGGCGC
GGAGTGCCGTAGATAGTTTGAGATTGGTGCAGGAAAAGAGAGCCAGGGCT
GAAGCAAGGAGGGTTCGGCACTTCGAGCAGCTGGGCGAGGCGAAAAGGGC
GGCCGCGGTGGCGAGAGCAGAGGCCAAGGTAGAGTCCAGACAGACCAGCA
GAGCAACAACGAAACGGAAGAGGGTTATATCGGGGCGCGAATGATACATA
GGGATACTCAACGAACAGCGCTTGCTGTAACAAGGTGGTGTGTGCAGTCT
ATATGCGTGTTGTGGTCCACTCTAACCCGACACAAAACAAATGGGGACTG
GGATATACATGACTTTCGTACACACCACCGTGTCTACCCCGATTTATCAA
CACCAACAGCAAGCTTTTGAGTGTACCTTGAGCGTTTGTCCACGGCAATT
CGTAGCTACAATCGTCAAATTTCTGATTACCACTGGGCGTAGCATTTTGT
GACCTTACAGATCGCGCTTCCGGGAGTGAGATGTAGACGTTTGCGTGTTT
CATGCGCCAGGCTGAGCGGGAAAATCGAGCGGAAGCAATGACAGAGTGTC
GGAATACCAAGGAGCTTTTAGAAGCCGCGCGATCGTCGTGCTCAGTCACC
GAGGAAGTGTCAAAGACACTGAGGAGAGATATGGAAACATTAAAGGCAAG
TGTTTACTTGGGAGACTTGACGGAGAATTATACACAGCGCAAAGCTTCTC
GTCAGAGCTAAGAAGAGGTGGTCGCTTTGATGATTACACTCAACCCATGT
GACCGGGATTGGATTTTCGTTACGTCTCCATGCCACCATAACGTTTGTCG
ATATCCCTCTCGAACTGCAGTGCGTTCCGCGTTTAAAAAATATCGTTAAG
TGTGTTGTTCGGCGTGACGTCTTCATGTGCAGGGTGAAGTCGAGAAGCTG
AGGAAGGCGCTGACCGAGACGGAGACATTGTTAGACCAAGAAAGGGCACG
TTTTGACGCGGCCAAGAGGGAGGGTGCTGAAGAGCTACAGGTGCTAACGC
CACTCAGAGCTGGAATGTAAACGTTTCCTGTACATGACCTTACCTCGGCT
GCCTCGTGTAGAGAGCTTGTAACGTTCTGGATTGCTTCCTGTAGCACTCG
AGGGAGCTCGGGTTCAAGCTGGCACTTACCTGGGCGAGTACTAGTGGCCG
CACTCGACTGATGTTTTTCGATGAACACGACACGCGTATTCTGCCCTCTG
CAAAATTGCTGTGCGTAGCGTCTACACGATGCGAGAATCACATTCCTGTA
AGATGAACCAACAACCGATATGTATAAACATTAAGTGTGCAGTGACGCGA
GTGGTGTTGACGCGACACGAGATCGTTGGTCTATATATCAGTTGACAAGG
ATCTGCCCCGTCGAGCTATAGGACAGTGTGGCGAGATCTAGCCCGATATT
GTTCTCACGTACAAAACACGAAGCTCTGCTCGTGTGAACTGCCGAGGTCG
TATCGTCATCGCGAGTGTTGACTGCAATCAGATACCCTTTTCACGCAATA
CGGCGTATGGGGGAAGGGGGTGCATGCTCCTGCTTTCTGTGCCTCAGTCA
TTACACCATTTACCACTCGTCCTCGAGGGAGTGGCGGTTTCATTCCATTA
TCGAGCACAATCAATGCTTAAGTCGTACCACTACTTCCTCTTATTATCTC
ACCTGCACCGTCGACGTCGGCACCACACCCTGTGGTGCACGTAAAATATG
TTCGGTATTATTGTGCAACAATGACTGCATCATGAGTGCAGCTGTGCGAG
CGTAAGCGCGAGTTGGAGGTGTTCGCGGCGAACGAAGCGGCTGCTGTTTT
GGAGCGGGTGGCGAAACTTCAGCTGGAGCGCTTGCCTGAGCATCAGCAGC
AGCTTTTACAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4520:504..3267-

>mRNA_H-paniculata_contig4520.11364.1 ID=mRNA_H-paniculata_contig4520.11364.1|Name=mRNA_H-paniculata_contig4520.11364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig4520:504..3267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACAGGACGCCTTGCCCGTGCAGACACAGGACGCCTTGCCCGTGCAGGT
ACTAAGTCTGAAGGCTCGCCTAAAGGGTGCACTGGAAAGCATTGGCTGCG
AAGGTCAGACAGCGGGGAGGGCATTGGAGAGGGTAACACGAGAACACATA
TCGCTAGGCGAAGGCTTAGGTGCTGTAGAGAAGGTACTAAGTCTGAAGGC
TCGCCTAAAGGGTGCACTGGAAAGCATTGGCTGCGAAGGTCAGACAGCGG
GGAGGGCATTGGAGAGGGTAACACGAGAACACATATCGCTAGGCGAAGGC
TTAGGTGCTGTAGAGAAGGAGCTGGTAATGGCAAGAAAAGAAGCGGCGCG
GAGTGCCGTAGATAGTTTGAGATTGGTGCAGGAAAAGAGAGCCAGGGCTG
AAGCAAGGAGGGTTCGGCACTTCGAGCAGCTGGGCGAGGCGAAAAGGGCG
GCCGCGGTGGCGAGAGCAGAGGCCAAGGAGCTGGTAATGGCAAGAAAAGA
AGCGGCGCGGAGTGCCGTAGATAGTTTGAGATTGGTGCAGGAAAAGAGAG
CCAGGGCTGAAGCAAGGAGGGTTCGGCACTTCGAGCAGCTGGGCGAGGCG
AAAAGGGCGGCCGCGGTGGCGAGAGCAGAGGCCAAGGCTGAGCGGGAAAA
TCGAGCGGAAGCAATGACAGAGTGTCGGAATACCAAGGAGCTTTTAGAAG
CCGCGCGATCGTCGTGCTCAGTCACCGAGGAAGTGTCAAAGACACTGAGG
AGAGATATGGAAACATTAAAGGCAAGTGCTGAGCGGGAAAATCGAGCGGA
AGCAATGACAGAGTGTCGGAATACCAAGGAGCTTTTAGAAGCCGCGCGAT
CGTCGTGCTCAGTCACCGAGGAAGTGTCAAAGACACTGAGGAGAGATATG
GAAACATTAAAGGCAAGTGGTGAAGTCGAGAAGCTGAGGAAGGCGCTGAC
CGAGACGGAGACATTGTTAGACCAAGAAAGGGCACGTTTTGACGCGGCCA
AGAGGGAGGGTGCTGAAGAGCTACAGGGTGAAGTCGAGAAGCTGAGGAAG
GCGCTGACCGAGACGGAGACATTGTTAGACCAAGAAAGGGCACGTTTTGA
CGCGGCCAAGAGGGAGGGTGCTGAAGAGCTACAGCTGTGCGAGCGTAAGC
GCGAGTTGGAGGTGTTCGCGGCGAACGAAGCGGCTGCTGTTTTGGAGCGG
GTGGCGAAACTTCAGCTGGAGCGCTTGCCTGAGCATCAGCAGCAGCTTTT
ACAGGCACTGTGCGAGCGTAAGCGCGAGTTGGAGGTGTTCGCGGCGAACG
AAGCGGCTGCTGTTTTGGAGCGGGTGGCGAAACTTCAGCTGGAGCGCTTG
CCTGAGCATCAGCAGCAGCTTTTACAGGCA
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