mRNA_H-paniculata_contig45173.11360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2N5T525_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5T525_9BASI) HSP 1 Score: 62.8 bits (151), Expect = 6.180e-10 Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 192
++LL+VAA DW + DF AYL +P D+EI++K P PG RL+KA+Y QA RCW
Sbjct: 1176 RLLLTVAAANDWPVHSFDFVAAYLNSPIDEEIWIKPPEGMTVPPGHALRLEKALYGTRQAARCW 1239
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2N5TGH8_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TGH8_9BASI) HSP 1 Score: 60.5 bits (145), Expect = 4.010e-9 Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 192
++LL+VAA DW + DF AYL +P D+E++VK P + G RL+KA+Y QA RCW
Sbjct: 850 RLLLTVAAANDWPVHSFDFVAAYLNSPIDEEVWVKPPEGMQVPAGHALRLEKALYGTRQAARCW 913
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY) HSP 1 Score: 57.0 bits (136), Expect = 6.660e-8 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGA---VGRLDKAIYRLVQAGRCW 192
+++L++AA DWE+ IDF+ AYL D+ I+++ P + E+PG + RL KA+Y L QAGR W
Sbjct: 314 RLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGF-EVPGREDWIWRLLKALYGLKQAGRLW 379
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438J8I4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J8I4_VITVI) HSP 1 Score: 56.2 bits (134), Expect = 9.560e-8 Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYR-EIPGA-VGRLDKAIYRLVQAGRCW 192
++LLS+AAN DWEL+ D + A+L ++EI+++IP+ +R E+ G V +L KA+Y L Q+ R W
Sbjct: 100 RILLSLAANYDWELQQYDVKNAFLHGDLEEEIYMEIPLGFRAELKGKRVCKLKKALYGLKQSPRTW 165
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438E865_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E865_VITVI) HSP 1 Score: 56.2 bits (134), Expect = 1.230e-7 Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYR-EIPGA-VGRLDKAIYRLVQAGRCW 192
++LLS+AAN DWEL+ D + A+L ++EI+++IP+ +R E+ G V +L KA+Y L Q+ R W
Sbjct: 335 RILLSLAANYDWELQRYDVKNAFLHGDLEEEIYMEIPLGFRAELKGKRVCKLKKALYGLKQSPRTW 400
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A438E7T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E7T4_VITVI) HSP 1 Score: 56.2 bits (134), Expect = 1.250e-7 Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIP--VKYREIPGAVGRLDKAIYRLVQAGRCW 192
K+LLSVAAN DW L +D + A+L ++E+++KIP ++ E G V +L K++Y L Q+ R W
Sbjct: 444 KVLLSVAANLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYSLKQSPRAW 509
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1PRM3_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PRM3_ARTAN) HSP 1 Score: 55.8 bits (133), Expect = 1.720e-7 Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 192
++LL++AAN WE+ H+D + A+L +E++V P + RE G V RL KA+Y L QA R W
Sbjct: 715 RLLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKRENSGKVYRLIKALYGLRQAPRAW 780
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A6A3D4S6_HIBSY (WD40/YVTN repeat-like-containing domain,Bromodomain isoform 3 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D4S6_HIBSY) HSP 1 Score: 55.8 bits (133), Expect = 1.720e-7 Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 4 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDKAIYRLVQAGRCW 192
+LLS+AAN DW L H+D + A+L +E+++ IP ++ E V RL K++Y L Q+ R W
Sbjct: 294 VLLSLAANLDWPLTHLDVKNAFLNGELAEEVYMDIPSRFEEEKDHVCRLKKSLYGLKQSLRAW 356
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A2U1P6C5_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P6C5_ARTAN) HSP 1 Score: 55.1 bits (131), Expect = 3.180e-7 Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 1 KMLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 192
++LL++AAN WE+ H+D + A+L +E++V P + +E G V RL KA+Y L QA R W
Sbjct: 251 RLLLAIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIEKENSGKVYRLIKALYGLKQAPRAW 316
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Match: A0A5D3BEZ6_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BEZ6_CUCME) HSP 1 Score: 55.1 bits (131), Expect = 3.190e-7 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 4 MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKY--REIPGAVGRLDKAIYRLVQAGRCW 192
++LSVA Q+W LR +DF A+L D+ +++ P +Y +PG + +L+KAIY L QA R W
Sbjct: 360 VVLSVALAQNWSLRQLDFNNAFLNGKLDEIVYMAQPPRYVNSSLPGYICKLNKAIYGLKQALRAW 424 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45173.11360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig45173.11360.1 >prot_H-paniculata_contig45173.11360.1 ID=prot_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp MLLSVAANQDWELRHIDFEQAYLQAPNDQEIFVKIPVKYREIPGAVGRLDback to top mRNA from alignment at H-paniculata_contig45173:1362..1553+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig45173.11360.1 ID=mRNA_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig45173:1362..1553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig45173:1362..1553+ >mRNA_H-paniculata_contig45173.11360.1 ID=mRNA_H-paniculata_contig45173.11360.1|Name=mRNA_H-paniculata_contig45173.11360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig45173:1362..1553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |