mRNA_H-paniculata_contig45150.11358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45150.11358.1
Unique NamemRNA_H-paniculata_contig45150.11358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: A0A6H5KRC5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.820e-15
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPGQ 120
            IEERSDP S FP+V+VFPEGTCTNQRALITFKHGPF  GQ
Sbjct:  263 IEERSDPASTFPRVLVFPEGTCTNQRALITFKHGPFITGQ 302
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: D7FLI2_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 7.820e-15
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPGQ 120
            IEERSDP S FP+V+VFPEGTCTNQRALITFKHGPF  GQ
Sbjct:  261 IEERSDPASTFPRVLVFPEGTCTNQRALITFKHGPFITGQ 300
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: G3PWL9_GASAC (Lysophosphatidylcholine acyltransferase 2 n=4 Tax=Cottioidei TaxID=8100 RepID=G3PWL9_GASAC)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            IE R+  + R+PQV++FPEGTCTN+  LITFK G F PG
Sbjct:  185 IESRAKSKGRWPQVLIFPEGTCTNRSCLITFKQGAFVPG 223
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: A0A3Q2DAP6_CYPVA (Lysophosphatidylcholine acyltransferase 2-like n=3 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3Q2DAP6_CYPVA)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            IE R+  + R+PQV++FPEGTCTN+  LITFK G F PG
Sbjct:  183 IESRAKSEGRWPQVLIFPEGTCTNRSCLITFKQGAFIPG 221
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: W5MJI9_LEPOC (Lysophosphatidylcholine acyltransferase 2 n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5MJI9_LEPOC)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            IE R+  Q ++PQV++FPEGTCTN+  LITFK G F PG
Sbjct:  197 IERRATSQGKWPQVLIFPEGTCTNRSCLITFKQGAFIPG 235
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: UPI0010547D05 (lysophosphatidylcholine acyltransferase 2-like n=1 Tax=Gouania willdenowi TaxID=441366 RepID=UPI0010547D05)

HSP 1 Score: 57.0 bits (136), Expect = 2.460e-8
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            IE R+    R+PQV++FPEGTCTN+  LITFK G F PG
Sbjct:  183 IESRAKSDGRWPQVLIFPEGTCTNRSCLITFKQGAFIPG 221
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: A0A3P9LH99_ORYLA (Lysophosphatidylcholine acyltransferase 2 n=4 Tax=Oryzias TaxID=8089 RepID=A0A3P9LH99_ORYLA)

HSP 1 Score: 57.4 bits (137), Expect = 2.540e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            IE R+  + R+PQV++FPEGTCTN+  LITFK G F PG
Sbjct:  182 IETRAKSEGRWPQVLIFPEGTCTNRACLITFKQGAFIPG 220
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: H2MEU4_ORYLA (Lysophosphatidylcholine acyltransferase 2 n=6 Tax=Oryzias TaxID=8089 RepID=H2MEU4_ORYLA)

HSP 1 Score: 57.4 bits (137), Expect = 2.540e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            IE R+  + R+PQV++FPEGTCTN+  LITFK G F PG
Sbjct:  183 IETRAKSEGRWPQVLIFPEGTCTNRACLITFKQGAFIPG 221
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: A0A1B0DJ85_PHLPP (EF-hand domain-containing protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0DJ85_PHLPP)

HSP 1 Score: 57.0 bits (136), Expect = 2.860e-8
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            I+ER++    +PQ+++FPEGTCTN+  LITFKHG F PG
Sbjct:   42 IKERANSPEDWPQIIIFPEGTCTNRSCLITFKHGAFYPG 80
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BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Match: A0A6B2EEP2_9DIPT (Putative phosphate acyltransferase (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EEP2_9DIPT)

HSP 1 Score: 57.0 bits (136), Expect = 3.480e-8
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPG 117
            I+ER++    +PQ+++FPEGTCTN+  LITFKHG F PG
Sbjct:  166 IKERANSPEDWPQIIIFPEGTCTNRSCLITFKHGAFYPG 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45150.11358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRC5_9PHAE7.820e-1585.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FLI2_ECTSI7.820e-1585.001-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
G3PWL9_GASAC1.860e-861.54Lysophosphatidylcholine acyltransferase 2 n=4 Tax=... [more]
A0A3Q2DAP6_CYPVA1.860e-861.54Lysophosphatidylcholine acyltransferase 2-like n=3... [more]
W5MJI9_LEPOC1.860e-861.54Lysophosphatidylcholine acyltransferase 2 n=3 Tax=... [more]
UPI0010547D052.460e-861.54lysophosphatidylcholine acyltransferase 2-like n=1... [more]
A0A3P9LH99_ORYLA2.540e-861.54Lysophosphatidylcholine acyltransferase 2 n=4 Tax=... [more]
H2MEU4_ORYLA2.540e-861.54Lysophosphatidylcholine acyltransferase 2 n=6 Tax=... [more]
A0A1B0DJ85_PHLPP2.860e-858.97EF-hand domain-containing protein n=1 Tax=Phleboto... [more]
A0A6B2EEP2_9DIPT3.480e-858.97Putative phosphate acyltransferase (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45150contigH-paniculata_contig45150:608..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.5e-12
Seed eggNOG ortholog2880.D7FLI2
Preferred nameLPCAT2
KEGG rclassRC00004,RC00037
KEGG koko:K13510,ko:K13512
KEGG ReactionR01318,R03437,R03438,R04413,R04480,R09035,R09036
KEGG Pathwayko00564,ko00565,ko01100,map00564,map00565,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0001654,GO:0001775,GO:0001894,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005811,GO:0005886,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006656,GO:0006658,GO:0006663,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010563,GO:0010604,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016407,GO:0016411,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019216,GO:0019220,GO:0019222,GO:0019637,GO:0030141,GO:0030258,GO:0030659,GO:0030667,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0035577,GO:0036148,GO:0036150,GO:0036151,GO:0036152,GO:0036230,GO:0042119,GO:0042171,GO:0042175,GO:0042176,GO:0042582,GO:0042592,GO:0043010,GO:0043129,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045055,GO:0045321,GO:0045732,GO:0045833,GO:0045936,GO:0046469,GO:0046470,GO:0046471,GO:0046473,GO:0046474,GO:0046486,GO:0046890,GO:0046903,GO:0047144,GO:0047159,GO:0047184,GO:0047191,GO:0047192,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048871,GO:0048875,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0060041,GO:0060249,GO:0060255,GO:0061024,GO:0065007,GO:0065008,GO:0071071,GO:0071072,GO:0071617,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090407,GO:0097164,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903726,GO:2001245,GO:2001246
EggNOG free text desc.1-alkylglycerophosphocholine O-acetyltransferase activity
EggNOG OGsCOG0204@1,KOG4666@2759
EC2.3.1.23,2.3.1.67
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.4702008-CDS-H-paniculata_contig45150:607..7541622930355.4702008-CDS-H-paniculata_contig45150:607..754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45150 608..754 +
1691481255.1639335-CDS-H-paniculata_contig45150:607..7541691481255.1639335-CDS-H-paniculata_contig45150:607..754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45150 608..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45150.11358.1prot_H-paniculata_contig45150.11358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45150 608..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45150.11358.1

>prot_H-paniculata_contig45150.11358.1 ID=prot_H-paniculata_contig45150.11358.1|Name=mRNA_H-paniculata_contig45150.11358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
IEERSDPQSRFPQVMVFPEGTCTNQRALITFKHGPFTPGQVMAVVNND*
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mRNA from alignment at H-paniculata_contig45150:608..754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45150.11358.1 ID=mRNA_H-paniculata_contig45150.11358.1|Name=mRNA_H-paniculata_contig45150.11358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig45150:608..754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAGGAACGCAGTGACCCGCAGTCGCGATTTCCTCAAGTTATGGTGTT
CCCGGAGGGCACGTGCACCAATCAGCGAGCTCTCATCACGTTCAAGCACG
GGCCTTTCACTCCTGGGCAGGTGATGGCAGTAGTGAATAATGACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45150:608..754+

>mRNA_H-paniculata_contig45150.11358.1 ID=mRNA_H-paniculata_contig45150.11358.1|Name=mRNA_H-paniculata_contig45150.11358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig45150:608..754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAGGAACGCAGTGACCCGCAGTCGCGATTTCCTCAAGTTATGGTGTT
CCCGGAGGGCACGTGCACCAATCAGCGAGCTCTCATCACGTTCAAGCACG
GGCCTTTCACTCCTGGGCAGGTGATGGCAGTAGTGAATAATGACTAAATC
GAGGAACGCAGTGACCCGCAGTCGCGATTTCCTCAAGTTATGGTGTTCCC
GGAGGGCACGTGCACCAATCAGCGAGCTCTCATCACGTTCAAGCACGGGC
CTTTCACTCCTGGGCAGGTGATGGCAGTAGTGAATAATGACTAA
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