mRNA_H-paniculata_contig4514.11357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4514.11357.1
Unique NamemRNA_H-paniculata_contig4514.11357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4514.11357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4514contigH-paniculata_contig4514:13721..14829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1109
Cds size819
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.379599-CDS-H-paniculata_contig4514:13720..145391622930355.379599-CDS-H-paniculata_contig4514:13720..14539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4514 13721..14539 +
1691481255.1469605-CDS-H-paniculata_contig4514:13720..145391691481255.1469605-CDS-H-paniculata_contig4514:13720..14539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4514 13721..14539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930355.4132636-UTR-H-paniculata_contig4514:14539..148291622930355.4132636-UTR-H-paniculata_contig4514:14539..14829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4514 14540..14829 +
1691481255.1553679-UTR-H-paniculata_contig4514:14539..148291691481255.1553679-UTR-H-paniculata_contig4514:14539..14829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4514 14540..14829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4514.11357.1prot_H-paniculata_contig4514.11357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4514 13721..14539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4514.11357.1

>prot_H-paniculata_contig4514.11357.1 ID=prot_H-paniculata_contig4514.11357.1|Name=mRNA_H-paniculata_contig4514.11357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MVNVRTKTCSHEGCAKESYYGSASTRKAEFCARHTKDGMVNVRSKTCSHE
GCSTRPSYGSAGTRKAEFCARHAEAGMVNVQNKTCFHEGCSTRQSYGSAG
TRKAEFCARHAEAGMVNVQNKMCSHEGCSTKPSYASAGTRKAEFCERHAQ
DGMVPDMTPKSINRGRRSQKWSSRSQIKGEVPSGGANRHVGYSETFEKAG
KRNRCTGRSHSDNCVVRENCIVKRARRGAGLTISEHLALRIPAAGMLSID
NLIDVKAEVTVSRYSLSDQTSQ*
back to top

mRNA from alignment at H-paniculata_contig4514:13721..14829+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4514.11357.1 ID=mRNA_H-paniculata_contig4514.11357.1|Name=mRNA_H-paniculata_contig4514.11357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-paniculata_contig4514:13721..14829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAATGTGCGGACCAAGACGTGCTCCCACGAGGGCTGCGCAAAAGA
GTCGTATTACGGGTCGGCGAGCACGAGAAAGGCCGAGTTCTGTGCGCGGC
ACACCAAAGACGGTATGGTGAATGTGCGGAGCAAGACGTGCTCCCACGAG
GGTTGCTCGACAAGGCCGTCGTACGGGTCGGCGGGCACGAGAAAGGCGGA
GTTCTGTGCGCGGCATGCCGAAGCCGGGATGGTAAACGTGCAGAATAAGA
CGTGCTTCCACGAGGGCTGCTCGACAAGGCAGTCGTACGGGTCGGCGGGC
ACGAGAAAGGCGGAGTTCTGTGCACGGCATGCCGAAGCCGGTATGGTGAA
CGTGCAGAATAAGATGTGCTCACACGAGGGTTGCTCGACAAAGCCGTCGT
ACGCGTCGGCGGGTACGAGAAAGGCAGAGTTCTGTGAGCGGCATGCCCAA
GACGGGATGGTCCCCGATATGACCCCTAAGAGCATTAACCGTGGCCGCCG
TTCGCAGAAATGGTCAAGTCGTTCACAGATAAAAGGAGAGGTTCCTTCGG
GTGGCGCCAACCGTCATGTTGGGTATTCGGAAACCTTCGAGAAGGCGGGA
AAGCGAAATCGATGTACGGGGCGTTCACACAGCGATAACTGTGTGGTACG
CGAGAATTGCATAGTGAAAAGGGCTCGCAGGGGCGCGGGATTGACAATCT
CCGAGCATCTGGCTCTTCGCATTCCCGCTGCTGGCATGTTGTCTATCGAC
AACTTGATCGACGTCAAGGCGGAGGTGACTGTGTCGCGATATTCGTTGTC
TGACCAGACTTCGCAGTGAGAGGCAGAGGATACAGGCCATGGAGGAGGCG
ATTAGGGATGGTGTTCTATGCGCGAGTAACAGCCGCTCATGAAAAATGGA
AACCAGGTTTTTTTATAGAAACAGAGTAACATTGATTTTTCATTGAAAAT
TTACGAACTGATGCGACCTGATAGTACAGGCAGGTCTTATCATTGCGAAT
GAAGGTTTGTGGTGGAGGCCAAGGGCAGACCCCTCCGTTACAAGAGGTCG
TGTCCATGTCAACGTGCATATTGAGCGTTCAAGGAGAAAAATGAATTCCT
CATCGTTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4514:13721..14829+

>mRNA_H-paniculata_contig4514.11357.1 ID=mRNA_H-paniculata_contig4514.11357.1|Name=mRNA_H-paniculata_contig4514.11357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig4514:13721..14829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAATGTGCGGACCAAGACGTGCTCCCACGAGGGCTGCGCAAAAGA
GTCGTATTACGGGTCGGCGAGCACGAGAAAGGCCGAGTTCTGTGCGCGGC
ACACCAAAGACGGTATGGTGAATGTGCGGAGCAAGACGTGCTCCCACGAG
GGTTGCTCGACAAGGCCGTCGTACGGGTCGGCGGGCACGAGAAAGGCGGA
GTTCTGTGCGCGGCATGCCGAAGCCGGGATGGTAAACGTGCAGAATAAGA
CGTGCTTCCACGAGGGCTGCTCGACAAGGCAGTCGTACGGGTCGGCGGGC
ACGAGAAAGGCGGAGTTCTGTGCACGGCATGCCGAAGCCGGTATGGTGAA
CGTGCAGAATAAGATGTGCTCACACGAGGGTTGCTCGACAAAGCCGTCGT
ACGCGTCGGCGGGTACGAGAAAGGCAGAGTTCTGTGAGCGGCATGCCCAA
GACGGGATGGTCCCCGATATGACCCCTAAGAGCATTAACCGTGGCCGCCG
TTCGCAGAAATGGTCAAGTCGTTCACAGATAAAAGGAGAGGTTCCTTCGG
GTGGCGCCAACCGTCATGTTGGGTATTCGGAAACCTTCGAGAAGGCGGGA
AAGCGAAATCGATGTACGGGGCGTTCACACAGCGATAACTGTGTGGTACG
CGAGAATTGCATAGTGAAAAGGGCTCGCAGGGGCGCGGGATTGACAATCT
CCGAGCATCTGGCTCTTCGCATTCCCGCTGCTGGCATGTTGTCTATCGAC
AACTTGATCGACGTCAAGGCGGAGGTGACTGTGTCGCGATATTCGTTGTC
TGACCAGACTTCGCAGTGAATGGTGAATGTGCGGACCAAGACGTGCTCCC
ACGAGGGCTGCGCAAAAGAGTCGTATTACGGGTCGGCGAGCACGAGAAAG
GCCGAGTTCTGTGCGCGGCACACCAAAGACGGTATGGTGAATGTGCGGAG
CAAGACGTGCTCCCACGAGGGTTGCTCGACAAGGCCGTCGTACGGGTCGG
CGGGCACGAGAAAGGCGGAGTTCTGTGCGCGGCATGCCGAAGCCGGGATG
GTAAACGTGCAGAATAAGACGTGCTTCCACGAGGGCTGCTCGACAAGGCA
GTCGTACGGGTCGGCGGGCACGAGAAAGGCGGAGTTCTGTGCACGGCATG
CCGAAGCCGGTATGGTGAACGTGCAGAATAAGATGTGCTCACACGAGGGT
TGCTCGACAAAGCCGTCGTACGCGTCGGCGGGTACGAGAAAGGCAGAGTT
CTGTGAGCGGCATGCCCAAGACGGGATGGTCCCCGATATGACCCCTAAGA
GCATTAACCGTGGCCGCCGTTCGCAGAAATGGTCAAGTCGTTCACAGATA
AAAGGAGAGGTTCCTTCGGGTGGCGCCAACCGTCATGTTGGGTATTCGGA
AACCTTCGAGAAGGCGGGAAAGCGAAATCGATGTACGGGGCGTTCACACA
GCGATAACTGTGTGGTACGCGAGAATTGCATAGTGAAAAGGGCTCGCAGG
GGCGCGGGATTGACAATCTCCGAGCATCTGGCTCTTCGCATTCCCGCTGC
TGGCATGTTGTCTATCGACAACTTGATCGACGTCAAGGCGGAGGTGACTG
TGTCGCGATATTCGTTGTCTGACCAGACTTCGCAGTGA
back to top