mRNA_H-paniculata_contig4513.11354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4513.11354.1
Unique NamemRNA_H-paniculata_contig4513.11354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: D7FKQ4_ECTSI (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ4_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 1.480e-110
Identity = 161/170 (94.71%), Postives = 168/170 (98.82%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFVQ 576
            MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPE+ETRSSKELLLNPVTICRNE E+CLIETSVNSVRVSIAVKQADEIETILC +F+SFLMQRAEQFVVMRRKPAEG+DISFLVTH+HLEK+WKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFVQ
Sbjct:    1 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEVETRSSKELLLNPVTICRNEQEKCLIETSVNSVRVSIAVKQADEIETILCHKFTSFLMQRAEQFVVMRRKPAEGFDISFLVTHSHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFVQ 170
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A836CIE5_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIE5_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.980e-94
Identity = 133/168 (79.17%), Postives = 154/168 (91.67%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            MANTLRPYL  IR TLDA+LCLRNFPSQTVERHNKPE+E +SSKELLLNP+TICRNE ERCL+E+S+NSVRVSI VKQADEIE+ILC++F+ FLMQR+EQF+VMRRK A GYDISFL+TH HLE MWKHKL+DF+I+FMEDIDKEISGMKIAINAR RI+A +++ QF
Sbjct:    1 MANTLRPYLTTIRHTLDASLCLRNFPSQTVERHNKPEVEVQSSKELLLNPITICRNEQERCLVESSINSVRVSIGVKQADEIESILCRKFTRFLMQRSEQFIVMRRKAAPGYDISFLITHAHLEGMWKHKLVDFVIEFMEDIDKEISGMKIAINARARIVASEYVRQF 168
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A067C4Y9_SAPPC (Actin-related protein 2/3 complex subunit 4 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C4Y9_SAPPC)

HSP 1 Score: 270 bits (690), Expect = 5.680e-89
Identity = 125/168 (74.40%), Postives = 148/168 (88.10%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            MANTL PYLNAIR TLD ALCL+NFPSQ VERHNKPE+E R SKEL+L P+ ICRNE+E+C IE S+NS RVSI +KQADEIE+ILC +FS FLMQRAEQF+++RRKP EGYD+SFL+TH+HLE ++KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A +FM QF
Sbjct:    1 MANTLAPYLNAIRATLDGALCLQNFPSQVVERHNKPEVEVRMSKELILTPIVICRNENEKCCIEPSINSARVSICIKQADEIESILCHKFSRFLMQRAEQFIILRRKPIEGYDMSFLITHSHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A024TP77_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP77_9STRA)

HSP 1 Score: 271 bits (694), Expect = 7.680e-89
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            MANTL PYLNAIR TLD ALCL+NFPSQ VERHNKPE+E   S+ELLLNPV ICRNE+ERC IE S+NS RVSI +KQADEIETILC +FS FLMQRAEQF++MRRKP EGY ISFL+ HTHLE ++KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A +FM QF
Sbjct:   50 MANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNENERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 217
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A2D4BNX3_PYTIN (Actin-related protein 2/3 complex subunit 4 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNX3_PYTIN)

HSP 1 Score: 270 bits (689), Expect = 8.060e-89
Identity = 129/168 (76.79%), Postives = 148/168 (88.10%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            MANTL PYL AIR +LDAALCLRNFPSQ VERHNKPE+E R SKELLLNP+ I RNE+E+CLIE S+NS RVSI +KQADEIETILC +F+ FLMQRAEQF++MRR P EGY +SFL+THTHLE ++KHKLIDFIIQFMEDIDKEIS MKI++NARGRI+A +FM QF
Sbjct:    1 MANTLAPYLTAIRNSLDAALCLRNFPSQVVERHNKPEVELRLSKELLLNPILIARNENEKCLIEPSINSTRVSICIKQADEIETILCHKFTRFLMQRAEQFIIMRRVPVEGYHMSFLITHTHLESLYKHKLIDFIIQFMEDIDKEISEMKISLNARGRIVATEFMKQF 168
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: W4GJL2_9STRA (Actin-related protein 2/3 complex subunit 4 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJL2_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.180e-88
Identity = 129/168 (76.79%), Postives = 147/168 (87.50%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            MANTL PYLNAIR TLDAALCL+NFPSQ VERHNKPEIE   S+ELLLNPV ICRNE+E+C IE S+NS RVSI++KQADEIETILC +FS FLMQRAEQF++MRRK  EGY ISFL+ HTHLE ++KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A +FM QF
Sbjct:    1 MANTLAPYLNAIRSTLDAALCLQNFPSQVVERHNKPEIEVGLSRELLLNPVVICRNENEKCCIEPSINSTRVSISIKQADEIETILCHKFSRFLMQRAEQFIIMRRKAIEGYSISFLIIHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: K3WN29_GLOUD (Actin-related protein 2/3 complex subunit 4 n=27 Tax=Oomycota TaxID=4762 RepID=K3WN29_GLOUD)

HSP 1 Score: 267 bits (682), Expect = 9.030e-88
Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = 1 
Query:   70 ANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            ANTL PYL AIR +LD+ALCLRNFPSQ VERHNKPE+E R SKELLLNP+ ICRNE E+CLIE SVNS RVSI +KQADEIETILC +F+ FLMQRA+QF++MRR P EGYD+SFLV HTHLE M+KHKLIDFII FMEDIDKEIS MKI++NARGRI+A +FM QF
Sbjct:    1 ANTLAPYLTAIRHSLDSALCLRNFPSQVVERHNKPEVELRLSKELLLNPILICRNETEKCLIEPSVNSTRVSICIKQADEIETILCHKFNRFLMQRADQFIIMRRVPVEGYDMSFLVIHTHLENMYKHKLIDFIITFMEDIDKEISEMKISLNARGRIVATEFMKQF 167
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A3R6WI01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WI01_9STRA)

HSP 1 Score: 270 bits (689), Expect = 2.570e-87
Identity = 128/167 (76.65%), Postives = 145/167 (86.83%), Query Frame = 1 
Query:   70 ANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            ANTL PYLNAIR TLD ALCL+NFPSQ VERHNKPE+E   S+ELLLNPV ICRNE+ERC IE S+NS RVSI +KQADEIETILC +FS FLMQRAEQF++MRRKP EGY ISFL+ HTHLE ++KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A +FM QF
Sbjct:  104 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNENERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 270
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A7S2BQQ1_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQQ1_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.640e-87
Identity = 125/168 (74.40%), Postives = 147/168 (87.50%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQF 570
            MA TLRPYLN IR TLDAALCLRNFPSQ VERHNKPEIE + +KELLLNP+TICR + ERCLIE SVNSVR+SI +KQADEIE +LC +F+ FLMQRA+QF++MRRK  EGY ISFLVTH HLEKMWK+KLIDFII FMEDID+EIS MK+A+NAR R++A++F+ +F
Sbjct:   11 MAATLRPYLNCIRSTLDAALCLRNFPSQIVERHNKPEIEIKGNKELLLNPITICRTKTERCLIEPSVNSVRISIQIKQADEIEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKNKLIDFIISFMEDIDREISAMKLAVNARARVVAKEFLKEF 178
[Close]
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Match: A0A7S2CG59_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG59_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.250e-86
Identity = 123/169 (72.78%), Postives = 147/169 (86.98%), Query Frame = 1 
Query:   67 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNPVTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQFVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFV 573
            MA+TL+PYL  +R TL+A LCLRNFPSQTVERHNKPE+E R SKELLLNP+TICR + ERCLIE SVNSVR+SI +KQADE+E +LC +F+ FLMQRA+QF++MRRK  EGY ISFLVTH HLEKMWK KLIDF+IQFMEDIDKEIS MK+A+N+R R +AQ+F+ +FV
Sbjct:    1 MASTLKPYLACVRTTLNAGLCLRNFPSQTVERHNKPEVEVRGSKELLLNPLTICRTDKERCLIEPSVNSVRISIQIKQADELEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKDKLIDFVIQFMEDIDKEISAMKLAVNSRARNVAQEFVREFV 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4513.11354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKQ4_ECTSI1.480e-11094.71Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A836CIE5_9STRA1.980e-9479.17Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A067C4Y9_SAPPC5.680e-8974.40Actin-related protein 2/3 complex subunit 4 n=4 Ta... [more]
A0A024TP77_9STRA7.680e-8976.79Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A2D4BNX3_PYTIN8.060e-8976.79Actin-related protein 2/3 complex subunit 4 n=2 Ta... [more]
W4GJL2_9STRA1.180e-8876.79Actin-related protein 2/3 complex subunit 4 n=5 Ta... [more]
K3WN29_GLOUD9.030e-8877.25Actin-related protein 2/3 complex subunit 4 n=27 T... [more]
A0A3R6WI01_9STRA2.570e-8776.65Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2BQQ1_9STRA2.640e-8774.40Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A7S2CG59_9STRA2.250e-8672.78Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4513contigH-paniculata_contig4513:4378..7067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.5
Seed ortholog evalue1.5e-86
Seed eggNOG ortholog2880.D7FKQ4
Preferred nameARPC4
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K05755,ko:K16608
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00750,map01100,map01120,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00124
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000147,GO:0000902,GO:0001667,GO:0002009,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005885,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006950,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0010638,GO:0012506,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019899,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023052,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030139,GO:0030175,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031334,GO:0031410,GO:0031982,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0033627,GO:0034314,GO:0034622,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0042060,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045010,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060429,GO:0061024,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099568,GO:0110053,GO:0120025,GO:1902903,GO:1902905
EggNOG free text desc.Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament
EggNOG OGsKOG1876@1,KOG1876@2759
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit ARPC4 or p20-Arc (Arp2/3 complex 20 kDa subunit)
Ec32 orthologEc-21_001730.1
EC1.4.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Exons4
Model size798
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4513.11354.1prot_H-paniculata_contig4513.11354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4513 4444..6848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930354.8373947-UTR-H-paniculata_contig4513:4377..44431622930354.8373947-UTR-H-paniculata_contig4513:4377..4443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4513 4378..4443 +
1691481254.9200265-UTR-H-paniculata_contig4513:4377..44431691481254.9200265-UTR-H-paniculata_contig4513:4377..4443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4513 4378..4443 +
1622930354.9184382-UTR-H-paniculata_contig4513:6848..70671622930354.9184382-UTR-H-paniculata_contig4513:6848..7067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4513 6849..7067 +
1691481254.982565-UTR-H-paniculata_contig4513:6848..70671691481254.982565-UTR-H-paniculata_contig4513:6848..7067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4513 6849..7067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930354.855828-CDS-H-paniculata_contig4513:4443..44461622930354.855828-CDS-H-paniculata_contig4513:4443..4446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 4444..4446 +
1691481254.9416614-CDS-H-paniculata_contig4513:4443..44461691481254.9416614-CDS-H-paniculata_contig4513:4443..4446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 4444..4446 +
1622930354.8720863-CDS-H-paniculata_contig4513:4550..46691622930354.8720863-CDS-H-paniculata_contig4513:4550..4669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 4551..4669 +
1691481254.9535882-CDS-H-paniculata_contig4513:4550..46691691481254.9535882-CDS-H-paniculata_contig4513:4550..4669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 4551..4669 +
1622930354.8878071-CDS-H-paniculata_contig4513:5903..61111622930354.8878071-CDS-H-paniculata_contig4513:5903..6111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 5904..6111 +
1691481254.9644346-CDS-H-paniculata_contig4513:5903..61111691481254.9644346-CDS-H-paniculata_contig4513:5903..6111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 5904..6111 +
1622930354.9029925-CDS-H-paniculata_contig4513:6665..68481622930354.9029925-CDS-H-paniculata_contig4513:6665..6848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 6666..6848 +
1691481254.9737744-CDS-H-paniculata_contig4513:6665..68481691481254.9737744-CDS-H-paniculata_contig4513:6665..6848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4513 6666..6848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4513.11354.1

>prot_H-paniculata_contig4513.11354.1 ID=prot_H-paniculata_contig4513.11354.1|Name=mRNA_H-paniculata_contig4513.11354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEIETRSSKELLLNP
VTICRNEHERCLIETSVNSVRVSIAVKQADEIETILCKRFSSFLMQRAEQ
FVVMRRKPAEGYDISFLVTHTHLEKMWKHKLIDFIIQFMEDIDKEISGMK
IAINARGRIIAQQFMLQFVQ*
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mRNA from alignment at H-paniculata_contig4513:4378..7067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4513.11354.1 ID=mRNA_H-paniculata_contig4513.11354.1|Name=mRNA_H-paniculata_contig4513.11354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2690bp|location=Sequence derived from alignment at H-paniculata_contig4513:4378..7067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTTCAGTTTTTAGGGGCTATCAGGAGAGTGGCCTGAGGAGGAGGAGC
TTGGAGTCGTGCAAAGATGGTGAGAACACAACATCAGTCAATGGTTGCCC
TTGTGGTGTGTACTTGTAAACTAAGACCAATGTTAATTCTCCAACTGCTA
ATCCGCCATACTCTATTGGACAGGCGAATACCCTTCGACCATACCTGAAC
GCGATTCGTGGCACATTGGATGCGGCTCTATGTCTCCGGAACTTCCCTTC
CCAGACCGTCGAGCGACACAACAAGCCCGAGATAGAAACCAGGTATAACA
TCGATGGACAAACACTGGAAAAAAGACACTTATACGGCAGTAGTGCAAAT
GGTGCTGTTCCAATACAGAACACCGTCATTTTGTGCTGATAGTACTGTAT
CTTGCCCACATCCACAAGTGTGGACGCAGCACCTTTTCTGGTAGTACAGT
GAAGAGTAACCAGTACCACAGCCCCACTTATGCCAGGCATTCTCTGGACA
GCATAGGTGACTGTAGCTCATACTGGTAGTATGGATTACTATGCCGCTGT
TGCAGGTCAAAAGTACCGTCTTGCTGGGCTAGCCAGGGTAGCTGAACCTG
CTATCAAGTTTTTGGAGAACAAAAGTTCGGTTGTGTGATGGTGGGTAAAT
GGAGCACACATGTATATAACCTGCAAGTACTGTACTGTACCTAGGCGAGG
CCCGAAGAAATACCTATACTAGAGGAGGTTTTGGGCAATCCTCTGAAATG
TTTCTTTGCGTAGGTTGGCTGAAAACCGTGTGTGAATTCGTTGATGGAAC
TAGCTTGCTGGTAATCCCGAACGGCGCTGTACTCTCTGCAGTTGCTACGG
CACCGAAATTTGTGTTTTCATTTGCTGCAATGAAAAATCCTAGGCCGTGC
AGAGGTCCTTACGCCCGACTTGGAGTAATGAATTTGTCTTGAAATATTCT
GGTGTGAACGACATCTTCATATCTTTGAGTTTGTTGAAATAACTTCTAAT
TTAATAAAATTATTATCTTGCTGACCAATTTGTTTGGATAATTCTCGTCC
TAAAAAAGCTAATCTAATAGCTTCTTCAGTTGTTTTTGCTCCTGCAGTAT
TAGGTAATAACCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTT
CTTCAGTTGTTTTTGCTCCTGCAGTATTAGGTAATAACCATAATTTCTTC
CAATTAATAGCTGTTATTAAATTTTCATCTTTAGATAAATTTACTAGATT
TAGTCTTCGAATAGCAACTGTACCCCCCCCCCCCTAATGCGATAATGGCG
TGTAGATACGTCCCGAGACATGAGGTTACCATGATTCACGCCGGCCTGAA
ATAATCAGCTGTAACGTAATAATCTGTGCTGTCATGTACGTTACAGCTGT
TCAGAGTACAGTAATAATTCGGCTCTTCATTAAATTCTGTCATGCACTGG
CACCACCCGCGGTTTATAACATTCAGGTCTAGCAAGGAACTCCTCCTCAA
TCCGGTCACTATATGCCGGAATGAGCATGAGCGATGCCTTATCGAAACAA
GCGTGAACAGCGTGCGAGTAAGTATCGCAGTCAAGCAAGCGGACGAGATC
GAGACGATTCTCTGCAAACGGTTCAGCAGCTTTTTGATGCAACGCGCCGA
GCAATTTGTGGTGATGCGACGAAAGCCTGCAGAGGTGGGAGCATTAATAT
CTCGTCTCTTCAGTTGTTTCTCCAATTGATGTCAATTTAACGTTTTCCCC
ACAATGTGTCTGCTGAGTCGTGATCGAAGTGATTTTCCCGCCAAGTAAAT
ATTCAGGATAGCCTGGTTAGATAAATGACATACTTCGCCGATCATTGTTG
GTGGATCAAATTGCACTAGTTACCACCATTTCGTGTCAACATCAAACTCC
GCGCTTTTAGAAGCTGGGCTCGTTGGCTAGGTAGGTCTGTTTGCGCTGAA
AGAATAGTCGAATTGGTAGCCTTCATTTGAAGGGAAGTAATTAATTTAAT
CTAGAACGCTCGTATTGGTCGCCCCAGGTTATGAGCAACATTCACAACTC
AACCGTACTTCGCGAACGGCATTAGTCTTGTGGCGGTGGCTGCCTAATGT
GAACAGTCGTCTACGCTTCAAGGAGATTGCGATCTAATTTCGGACAAGGT
TTGTATCAATCTGCACATGACTTGTGACGGGTCAACGCATGTTTGGCATA
AATTATCATACTAACTTCCAACTACGTCATCCGCACAGGGATATGACATC
AGCTTCCTGGTGACGCACACACATTTGGAGAAGATGTGGAAGCACAAGCT
TATCGACTTCATCATCCAGTTTATGGAGGACATCGATAAAGAAATCAGCG
GCATGAAGATCGCTATCAATGCTCGTGGCAGAATCATTGCCCAACAGTTT
ATGTTGCAGTTTGTTCAGTAGTCACTAATGTGAGGCATGTTTGATTAGAA
TATCTGCAGGTGAAGATGGGTATGTGCAATATCATTGTCGATGTGCATCT
CGCCGGGGTGAAAATATATCAATAATTCCAAGCGGAATAGGGAAGATGAA
GTAACTAACGCACCACGGCGAGTGTATATTCCCTGATGGTTGTATACCTC
AACCGCATAAATTCATGTCATGAATCATTCTTGTATTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4513:4378..7067+

>mRNA_H-paniculata_contig4513.11354.1 ID=mRNA_H-paniculata_contig4513.11354.1|Name=mRNA_H-paniculata_contig4513.11354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig4513:4378..7067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGCGAATACCCTTCGACCATACCTGAACGCGATTCGTGGCACATT
GGATGCGGCTCTATGTCTCCGGAACTTCCCTTCCCAGACCGTCGAGCGAC
ACAACAAGCCCGAGATAGAAACCAGGCGAATACCCTTCGACCATACCTGA
ACGCGATTCGTGGCACATTGGATGCGGCTCTATGTCTCCGGAACTTCCCT
TCCCAGACCGTCGAGCGACACAACAAGCCCGAGATAGAAACCAGGTCTAG
CAAGGAACTCCTCCTCAATCCGGTCACTATATGCCGGAATGAGCATGAGC
GATGCCTTATCGAAACAAGCGTGAACAGCGTGCGAGTAAGTATCGCAGTC
AAGCAAGCGGACGAGATCGAGACGATTCTCTGCAAACGGTTCAGCAGCTT
TTTGATGCAACGCGCCGAGCAATTTGTGGTGATGCGACGAAAGCCTGCAG
AGGTCTAGCAAGGAACTCCTCCTCAATCCGGTCACTATATGCCGGAATGA
GCATGAGCGATGCCTTATCGAAACAAGCGTGAACAGCGTGCGAGTAAGTA
TCGCAGTCAAGCAAGCGGACGAGATCGAGACGATTCTCTGCAAACGGTTC
AGCAGCTTTTTGATGCAACGCGCCGAGCAATTTGTGGTGATGCGACGAAA
GCCTGCAGAGGGATATGACATCAGCTTCCTGGTGACGCACACACATTTGG
AGAAGATGTGGAAGCACAAGCTTATCGACTTCATCATCCAGTTTATGGAG
GACATCGATAAAGAAATCAGCGGCATGAAGATCGCTATCAATGCTCGTGG
CAGAATCATTGCCCAACAGTTTATGTTGCAGTTTGTTCAGTAGGGATATG
ACATCAGCTTCCTGGTGACGCACACACATTTGGAGAAGATGTGGAAGCAC
AAGCTTATCGACTTCATCATCCAGTTTATGGAGGACATCGATAAAGAAAT
CAGCGGCATGAAGATCGCTATCAATGCTCGTGGCAGAATCATTGCCCAAC
AGTTTATGTTGCAGTTTGTTCAGTAG
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