prot_H-paniculata_contig4510.11350.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4510.11350.1
Unique Nameprot_H-paniculata_contig4510.11350.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length168
Homology
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BLAST of mRNA_H-paniculata_contig4510.11350.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:   26 KIVNFGYHHSKIMLLKYRTGLRVVVITANLTPNCRQGKSQMVWYQDFSRKKP 77
            K ++ G HHSK++LLKY+TG+RVV++T N+ P+   G+ Q  WYQDF  K P
Sbjct:  267 KTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPP 318
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BLAST of mRNA_H-paniculata_contig4510.11350.1 vs. uniprot
Match: A0A5J4TRY7_9EUKA (Putative Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TRY7_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.860e-6
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   28 VNFGYHHSKIMLLKYRTGLRVVVITANLTPNCRQGKSQMVWYQDF 72
            V +G  HSKIMLLKY TGLRVVV +ANL  +  + K+Q +W QDF
Sbjct:  103 VQYGTFHSKIMLLKYPTGLRVVVTSANLVHSDWESKTQAIWCQDF 147
[Close]
BLAST of mRNA_H-paniculata_contig4510.11350.1 vs. uniprot
Match: A0A5J4WI50_9EUKA (Putative tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WI50_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 7.720e-6
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   28 VNFGYHHSKIMLLKYRTGLRVVVITANLTPNCRQGKSQMVWYQDF 72
            V +G  HSKIMLLKY TGLRVVV +ANL  +  + K+Q +W QDF
Sbjct:  103 VQYGTFHSKIMLLKYPTGLRVVVTSANLVHSDWESKTQAIWCQDF 147
[Close]
BLAST of mRNA_H-paniculata_contig4510.11350.1 vs. uniprot
Match: F0W1W9_9STRA (TyrosylDNA phosphodiesterase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1W9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.130e-5
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 0 
Query:    1 MSELIAGDFTSTLLSTFLFD----------ALFLF---------KIVN-----------FGYHHSKIMLLKYRTGLRVVVITANLTPNCRQGKSQMVWYQDFSRK 75
            +++L+ G+FTS LLS +++D          ++FLF         K  N           FG HHSK+M++ Y   +RV + TAN  P     K+Q +W+QDF  K
Sbjct:   79 LTDLLDGEFTSCLLSNYMYDVPWLMQQYFVSIFLFWQSIKHQCQKYTNIKTIAPYLPIPFGTHHSKMMIIWYAEKVRVAIFTANFLPIDWNNKTQGIWFQDFGLK 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4510.11350.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIJ8_ECTSI2.230e-851.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5J4TRY7_9EUKA2.860e-660.00Putative Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=S... [more]
A0A5J4WI50_9EUKA7.720e-660.00Putative tyrosyl-DNA phosphodiesterase 1 n=1 Tax=S... [more]
F0W1W9_9STRA4.130e-533.33TyrosylDNA phosphodiesterase putative n=1 Tax=Albu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.870.10coord: 27..95
e-value: 1.8E-15
score: 58.7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableSUPERFAMILY56024Phospholipase D/nucleasecoord: 8..83
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
IPR010347Tyrosyl-DNA phosphodiesterase IPFAMPF06087Tyr-DNA_phosphocoord: 29..89
e-value: 1.9E-12
score: 46.8
IPR010347Tyrosyl-DNA phosphodiesterase IPANTHERPTHR12415TYROSYL-DNA PHOSPHODIESTERASE 1coord: 29..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4510contigH-paniculata_contig4510:1915..13226 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4510.11350.1mRNA_H-paniculata_contig4510.11350.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4510 1866..13429 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4510.11350.1 ID=prot_H-paniculata_contig4510.11350.1|Name=mRNA_H-paniculata_contig4510.11350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MSELIAGDFTSTLLSTFLFDALFLFKIVNFGYHHSKIMLLKYRTGLRVVV
ITANLTPNCRQGKSQMVWYQDFSRKKPYEDDKREERDKFNGYAETEQEEA
DAAETAKPIEEAQAAGAAAKELADSAAIAKNKKHKKDSKEVDMAERDDGI
LLGLQTIPRGSPRRRGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010347Tdp1