prot_H-paniculata_contig451.11347.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig451.11347.1
Unique Nameprot_H-paniculata_contig451.11347.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length544
Homology
BLAST of mRNA_H-paniculata_contig451.11347.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE)

HSP 1 Score: 479 bits (1233), Expect = 6.290e-161
Identity = 256/544 (47.06%), Postives = 346/544 (63.60%), Query Frame = 0
Query:    1 MPVAPPCRHSFCSACLKKFVRSAGNRRPTNVPTRPACP---ICREMFSPETVEKNVTVFEDMRKATVVCKNKGCGAQFCPLRWKHHQEECPAASVQCKHHLVGCAWKGRRRGLSAHLESCAYEKIKGLIPRISGSLKKVQGQIHALEARVLAQNTRLANMRAFLVGVHQRERRGSLFPATYALLWRPQDWRRYSCPN-SDGVLANVTLICFAPIVFMALWGAGVFHSGSGGSLAQRVASLVGLAILGFFALVEYNNSAPWHVLTHPRLLRGVKIGPLLLESTTMLVVYAAIKPLSPSLQWAASLLFIAPLTFSTVVHGIHRFQVNLNEAQIQARQSL--PSRTRVRPSPVKVYRPTINGVIWAYAMLTFGAEAVLVARVSAKVGLCAASSGVGPRVWDELSDRLWANANIGRSPEEKDHIQQMNEINQWSTKAPFPNWTSIRARACMLVVCFFIFGVLVSAYRDCLRTVGFSLIAMHIMNKTYLLWDIWVGRWVMASLEQTSPRLNADAGGTRNALYDLWRSRLLVIWLVFGSASFVLLAMLSS 538
            MPV PPC+H+FC+ CLK  VR+A +R+  +  T P      +CRE F+PE V+ +  +FE+M KATV C+N  C AQFCPLRWK HQEECP+A VQC HHLVGC W+G RR LS H+E CAYEKIKGLIPR+S SLK++  Q+H LEARV+AQN  +AN RA L   HQR+  GS+FPA YALLWRP +WR Y  P    GVL+NVTLIC API+F+AL GAGVF  G G  + +R   LVG+AILGF AL+E++N +P+H L  P LL+G+ IG  LLE T   +VY A+K L    +  A L  +APL + TVV  +HRF+V +  A  QA+++   P    V P  VK +   +NGV+    ML       LV  V AK+G+   S+ +GP   D   + +W   + G + ++K  +++ ++      + P PN T    R  +  VC  +F ++V+ +RD L+ VG+S + + +++  +  W++ VGR VM SL+QT  R N D    R    DL RSRLL++W+V GS SF LL ML+S
Sbjct:   40 MPVFPPCQHTFCAGCLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCVWEGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLA--HQRQA-GSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPPVEPVAVKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQT--RTNQDPNFARTRARDLLRSRLLLLWVVVGS-SFFLLFMLTS 577          
BLAST of mRNA_H-paniculata_contig451.11347.1 vs. uniprot
Match: A0A6F9DKF0_9ASCI (Multiple PDZ domain protein n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DKF0_9ASCI)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-5
Identity = 36/132 (27.27%), Postives = 60/132 (45.45%), Query Frame = 0
Query:    2 PVAPPCRHSFCSACLKKFVRSAGNRRPTNVPTRPACPICREMF---SPETVEKNVTVFEDMRKATVVCKNKGCGAQFCPLRWK------HHQEECPAASVQCKHHLVGCAWKGRRRGLSAHLESCAYEKIKG 124
            P    C H+FCS CLK +VR            +  CPI R+     S +  + ++ + + + K TV C N       C L+        H +E CP   ++C   + GC++KG R     H++ C +++ +G
Sbjct:  318 PYDTKCGHTFCSICLKNYVR-----------LKKMCPIDRKELTVGSGDCWQSSLVLRKLVNKLTVRCPNH----DHCDLKLPRTDLEAHLKERCPGGMIRCSKAIYGCSYKGPRVEQVDHIKHCKFQQFEG 434          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig451.11347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZ19_9PHAE6.290e-16147.06RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6F9DKF0_9ASCI1.240e-527.27Multiple PDZ domain protein n=1 Tax=Phallusia mamm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 64..114
e-value: 1.1E-5
score: 27.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..63
e-value: 6.4E-9
score: 37.4
NoneNo IPR availablePANTHERPTHR10131:SF129TNF RECEPTOR-ASSOCIATED FACTOR 6coord: 2..118
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 2..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 462..480
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 313..438
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 543..543
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 481..518
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 251..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 293..312
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 519..542
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..287
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 222..232
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 288..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 198..221
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 233..250
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 439..456
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 457..461
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..47
NoneNo IPR availableTMHMMTMhelixcoord: 296..315
NoneNo IPR availableTMHMMTMhelixcoord: 353..375
NoneNo IPR availableTMHMMTMhelixcoord: 197..219
NoneNo IPR availableTMHMMTMhelixcoord: 229..251
NoneNo IPR availableTMHMMTMhelixcoord: 264..286
NoneNo IPR availableTMHMMTMhelixcoord: 520..542
NoneNo IPR availableTMHMMTMhelixcoord: 434..456
NoneNo IPR availableTMHMMTMhelixcoord: 463..485
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 7..16
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 83..122
score: 8.689
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 6..41
score: 9.052
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 62..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig451contigH-paniculata_contig451:7063..13992 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig451.11347.1mRNA_H-paniculata_contig451.11347.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig451 1036..15241 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig451.11347.1 ID=prot_H-paniculata_contig451.11347.1|Name=mRNA_H-paniculata_contig451.11347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=544bp
MPVAPPCRHSFCSACLKKFVRSAGNRRPTNVPTRPACPICREMFSPETVE
KNVTVFEDMRKATVVCKNKGCGAQFCPLRWKHHQEECPAASVQCKHHLVG
CAWKGRRRGLSAHLESCAYEKIKGLIPRISGSLKKVQGQIHALEARVLAQ
NTRLANMRAFLVGVHQRERRGSLFPATYALLWRPQDWRRYSCPNSDGVLA
NVTLICFAPIVFMALWGAGVFHSGSGGSLAQRVASLVGLAILGFFALVEY
NNSAPWHVLTHPRLLRGVKIGPLLLESTTMLVVYAAIKPLSPSLQWAASL
LFIAPLTFSTVVHGIHRFQVNLNEAQIQARQSLPSRTRVRPSPVKVYRPT
INGVIWAYAMLTFGAEAVLVARVSAKVGLCAASSGVGPRVWDELSDRLWA
NANIGRSPEEKDHIQQMNEINQWSTKAPFPNWTSIRARACMLVVCFFIFG
VLVSAYRDCLRTVGFSLIAMHIMNKTYLLWDIWVGRWVMASLEQTSPRLN
ADAGGTRNALYDLWRSRLLVIWLVFGSASFVLLAMLSSPVLVN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001293Znf_TRAF
IPR001841Znf_RING
IPR008974TRAF-like