mRNA_H-paniculata_contig45090.11345.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45090.11345.1
Unique NamemRNA_H-paniculata_contig45090.11345.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: D7FTI2_ECTSI (Store-operated calcium entry-associated regulatory factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTI2_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.660e-23
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    4 GDDGQPQWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSLDSTGSGYDSGRFDSTGFNLGHFIFLCIFGWILKRFIWSW 267
            GDDGQPQWEC A+LP     GAV VSCEG +S  DP +LVGSCSLTYSLD+ G  +  G+  S+G NLG+ +F  IFG    R + +W
Sbjct:   69 GDDGQPQWECSADLPADGALGAVTVSCEGFDSPSDPYVLVGSCSLTYSLDAVGPWFGGGK--SSGLNLGNVVFFVIFGSFAIRILRAW 154
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A1Y2FG30_9BASI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FG30_9BASI)

HSP 1 Score: 72.4 bits (176), Expect = 3.450e-13
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSLDSTGSGY-DSG 180
            +G+DG    +W C AELP G+RFGAV V CEG +S DDP IL GSC LTY+L  T S   DSG
Sbjct:   54 VGEDGSGGLEWSCTAELPKGIRFGAVEVGCEGWDSSDDPYILKGSCGLTYNLVHTSSALEDSG 116
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A238FSG3_9BASI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FSG3_9BASI)

HSP 1 Score: 68.9 bits (167), Expect = 8.530e-12
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSLDSTGSGYDSGRFD 189
            +G+DG    +W C AELP G+RFGAV V CEG E   DP IL GSC LTY L  T    ++G ++
Sbjct:   81 VGEDGAGGLEWSCSAELPKGVRFGAVEVGCEGWEGPQDPYILRGSCGLTYELVRTSPALENGYYN 145
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A2S9ZXD1_RHOTO (Store-operated calcium entry-associated regulatory factor (Fragment) n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A2S9ZXD1_RHOTO)

HSP 1 Score: 63.9 bits (154), Expect = 2.280e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSL 150
            +G DG    +W+C+A+LP G+RFG V VSCEG +  DDP I+  SC LTYSL
Sbjct:   47 VGSDGAGGLEWKCEADLPNGVRFGEVGVSCEGWDGPDDPYIVRASCGLTYSL 98
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A511KN39_RHOTO (Store-operated calcium entry-associated regulatory factor n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KN39_RHOTO)

HSP 1 Score: 66.6 bits (161), Expect = 7.510e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSLDSTGSGYDSGRFDS 192
            +G DG    +W+C+A+LP G+RFG + VSCEG +  DDP I+ GSC LTYSL  + +  + G + S
Sbjct:   56 VGSDGAGGLEWKCEADLPNGVRFGEIGVSCEGWDGPDDPYIVRGSCGLTYSLVRSSAHLEGGGYAS 121
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A109FIR5_9BASI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Rhodotorula sp. JG-1b TaxID=1305733 RepID=A0A109FIR5_9BASI)

HSP 1 Score: 65.9 bits (159), Expect = 1.120e-10
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSL 150
            +G DG    +W+C A+LP GLRFG V VSCEG +  DDP IL GSC LTYSL
Sbjct:   56 VGTDGVGGLEWKCDADLPSGLRFGDVDVSCEGWDGPDDPNILRGSCGLTYSL 107
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A261XY99_9FUNG (Store-operated calcium entry-associated regulatory factor n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XY99_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 1.940e-10
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MGDDGQP-QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSL 150
            +G DG   QW C+A+LP G++FG V VSCEG +  DDP IL GSC L+YSL
Sbjct:   77 VGWDGTDVQWRCEADLPKGIKFGDVEVSCEGYDYPDDPYILKGSCGLSYSL 127
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A7K7VGD6_EUDEL (Store-operated calcium entry-associated regulatory factor (Fragment) n=1 Tax=Eudromia elegans TaxID=8805 RepID=A0A7K7VGD6_EUDEL)

HSP 1 Score: 62.8 bits (151), Expect = 2.800e-10
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   22 QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSLDSTGSGYDSGRFDSTGFNLG 210
            QWECKA+L  G RFG + VSCEG +   DP IL GSC L +SL+ T  G    +  S GF  G
Sbjct:    1 QWECKADLESGYRFGEIEVSCEGYDYPGDPYILEGSCGLLFSLELTEEGKRRAK-GSGGFGYG 62
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BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A2S5BDX7_9BASI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BDX7_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 3.350e-10
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSL----DSTGSGYDS 177
            +G DG    +W+C+A+LP GLRFG V VSCEG +  +DP IL GSC L YSL     S   GYDS
Sbjct:  151 VGSDGVGGLEWKCEADLPSGLRFGEVDVSCEGWDGPNDPNILRGSCGLRYSLVKASPSFEQGYDS 215
[Close]
BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Match: A0A0K3CPP1_RHOTO (Store-operated calcium entry-associated regulatory factor n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CPP1_RHOTO)

HSP 1 Score: 63.9 bits (154), Expect = 5.280e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MGDDGQP--QWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSL 150
            +G DG    +W+C+A+LP G+RFG V VSCEG +  DDP I+  SC LTYSL
Sbjct:   56 VGSDGAGGLEWKCEADLPNGVRFGEVGVSCEGWDGPDDPYIVRASCGLTYSL 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45090.11345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FTI2_ECTSI2.660e-2355.68Store-operated calcium entry-associated regulatory... [more]
A0A1Y2FG30_9BASI3.450e-1358.73Store-operated calcium entry-associated regulatory... [more]
A0A238FSG3_9BASI8.530e-1250.77Store-operated calcium entry-associated regulatory... [more]
A0A2S9ZXD1_RHOTO2.280e-1155.77Store-operated calcium entry-associated regulatory... [more]
A0A511KN39_RHOTO7.510e-1146.97Store-operated calcium entry-associated regulatory... [more]
A0A109FIR5_9BASI1.120e-1061.54Store-operated calcium entry-associated regulatory... [more]
A0A261XY99_9FUNG1.940e-1058.82Store-operated calcium entry-associated regulatory... [more]
A0A7K7VGD6_EUDEL2.800e-1050.79Store-operated calcium entry-associated regulatory... [more]
A0A2S5BDX7_9BASI3.350e-1053.85Store-operated calcium entry-associated regulatory... [more]
A0A0K3CPP1_RHOTO5.280e-1055.77Store-operated calcium entry-associated regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45090contigH-paniculata_contig45090:320..1429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue6.3e-20
Seed eggNOG ortholog2880.D7FTI2
Preferred nameTMEM66
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
EggNOG free text desc.Store-operated calcium entry-associated regulatory factor
EggNOG OGs28KQW@1,2QT6Y@2759
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-21_001460.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930353.5722194-CDS-H-paniculata_contig45090:319..4861622930353.5722194-CDS-H-paniculata_contig45090:319..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45090 320..486 +
1691481254.29853-CDS-H-paniculata_contig45090:319..4861691481254.29853-CDS-H-paniculata_contig45090:319..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45090 320..486 +
1622930353.5849385-CDS-H-paniculata_contig45090:1329..14291622930353.5849385-CDS-H-paniculata_contig45090:1329..1429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45090 1330..1429 +
1691481254.3104732-CDS-H-paniculata_contig45090:1329..14291691481254.3104732-CDS-H-paniculata_contig45090:1329..1429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45090 1330..1429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45090.11345.1prot_H-paniculata_contig45090.11345.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45090 320..1429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45090.11345.1

>prot_H-paniculata_contig45090.11345.1 ID=prot_H-paniculata_contig45090.11345.1|Name=mRNA_H-paniculata_contig45090.11345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MGDDGQPQWECKAELPYGLRFGAVMVSCEGLESKDDPVILVGSCSLTYSL
DSTGSGYDSGRFDSTGFNLGHFIFLCIFGWILKRFIWSW
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mRNA from alignment at H-paniculata_contig45090:320..1429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45090.11345.1 ID=mRNA_H-paniculata_contig45090.11345.1|Name=mRNA_H-paniculata_contig45090.11345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig45090:320..1429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGATGATGGACAGCCGCAGTGGGAGTGTAAAGCCGAGCTGCCGTA
TGGGCTACGTTTCGGAGCGGTAATGGTGTCGTGTGAGGGCCTTGAGTCTA
AAGACGACCCAGTCATCCTCGTTGGAAGCTGCTCTCTCACCTACTCTCTA
GACTCCACGGGCTCGGGGTAAGTTAGCATTGGAGGGGACATAGGTATGAC
TAAGTGATGACGGTAGGTTCCGCGGCTGTGCATGGACATCCATGAAAATA
GTGTGGATGCAGGCTTCAAATTTAATGGTGGTTGATTCTAGGGCATTTTT
TTTTTGTTTTTCACGCCTAGATGGATATATCGAGTGGAATTACACATCTC
AATATCAAAGGACTCTGGTCTCGCTCAAGAAATAAAGTAGAAGGCGGGAA
AATTGTGCGGTACGGAGGATGAGCGAGCGAGCAGCATCAAATATCAACCA
TTTCGCTTTTTTGGACCACCATTGGGTTTTTGAAGGGCTCATTCATTATT
GTGGTACGGTAGGCCAATATCCATGGTTGATGTGAGATTTTCTGCCCTTT
TTCAAGGTTTGCTTTCTCACACACACGTTACTTGAGGACAGACTTGACAA
AAAATATAAGAAACCCTTAGCATCTGTGGAGAGCACGTTCCTCGTGTTCC
TCGTATTCCTGAACCCCAGTCCCCTACCCAACATCCGGAGGCTTTTCTGC
CTCAGTGTTGGATTGGGTGTCTATCTGCTGTGTCCGTCTCTTGAGGGTTG
CCTACTAATTATCTTGGAGAGATAAATCTCTCGGTATAGATATTAAACAG
AACTGTGTATGCTCCACACTGCTGCTATTAATAATAGTACATTCCTGAAC
CTACTGGCAGACCACTCTTTACAGAGAAGAGCATTATGCCCACGGCAATC
ATTCTCCATTCGTGGGAGCGTTATGTTCTTAGATAGCGTATTACTATATA
TAATAAAGTTGCCTGTATGTGCATATATATATATTGGTGATGATGACGGT
TAATGACCAGGTACGACAGCGGGAGGTTCGACTCGACTGGCTTCAATCTT
GGGCATTTTATATTTTTGTGCATCTTTGGATGGATCCTGAAGCGGTTCAT
ATGGTCCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig45090:320..1429+

>mRNA_H-paniculata_contig45090.11345.1 ID=mRNA_H-paniculata_contig45090.11345.1|Name=mRNA_H-paniculata_contig45090.11345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig45090:320..1429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGATGATGGACAGCCGCAGTGGGAGTGTAAAGCCGAGCTGCCGTA
TGGGCTACGTTTCGGAGCGGTAATGGTGTCGTGTGAGGGCCTTGAGTCTA
AAGACGACCCAGTCATCCTCGTTGGAAGCTGCTCTCTCACCTACTCTCTA
GACTCCACGGGCTCGGGATGGGTGATGATGGACAGCCGCAGTGGGAGTGT
AAAGCCGAGCTGCCGTATGGGCTACGTTTCGGAGCGGTAATGGTGTCGTG
TGAGGGCCTTGAGTCTAAAGACGACCCAGTCATCCTCGTTGGAAGCTGCT
CTCTCACCTACTCTCTAGACTCCACGGGCTCGGGGTACGACAGCGGGAGG
TTCGACTCGACTGGCTTCAATCTTGGGCATTTTATATTTTTGTGCATCTT
TGGATGGATCCTGAAGCGGTTCATATGGTCCTGGGTACGACAGCGGGAGG
TTCGACTCGACTGGCTTCAATCTTGGGCATTTTATATTTTTGTGCATCTT
TGGATGGATCCTGAAGCGGTTCATATGGTCCTGG
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