prot_H-paniculata_contig45081.11342.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig45081.11342.1
Unique Nameprot_H-paniculata_contig45081.11342.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length52
Homology
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KFV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.020e-13
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T GE  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  497 LRCDKGGENTGGEMSNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 547          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KEV0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.120e-13
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:   13 LRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 63          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5JAY3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.820e-13
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  114 LRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 164          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.240e-12
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+S RDG++LAEV R
Sbjct:   62 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTR 112          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KGZ1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-12
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  215 LRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 265          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+SERDG+TLA V R
Sbjct:   37 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTR 87          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+SERDG+TLA V R
Sbjct:  495 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTR 545          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+SERDG+TLA V R
Sbjct:   14 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTR 64          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+SERDG+TLA V R
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTR 221          
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 51
            +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+SERDG+TLA V R
Sbjct:  367 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTR 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFV1_9PHAE2.020e-1360.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEV0_9PHAE2.120e-1358.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAY3_9PHAE3.820e-1358.82Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KV62_9PHAE1.240e-1256.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KGZ1_9PHAE1.560e-1258.82Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K5H2_9PHAE1.800e-1258.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE1.800e-1258.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KS50_9PHAE1.800e-1258.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.800e-1258.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE1.800e-1258.82Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..51
e-value: 1.1E-11
score: 46.8
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 2..47
e-value: 3.7E-9
score: 36.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..51
score: 12.516
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45081contigH-paniculata_contig45081:195..350 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45081.11342.1mRNA_H-paniculata_contig45081.11342.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig45081 195..359 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig45081.11342.1 ID=prot_H-paniculata_contig45081.11342.1|Name=mRNA_H-paniculata_contig45081.11342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVV
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf