mRNA_H-paniculata_contig45081.11342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45081.11342.1
Unique NamemRNA_H-paniculata_contig45081.11342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KEV0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.590e-15
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:   10 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 63
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BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KFV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-14
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T GE  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  494 IEVLRCDKGGENTGGEMSNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 547
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5JAY3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-14
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  111 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 164
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.660e-14
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            +K +R D+GGE T  EF  +C  +A+K E+A TNTPQQ+G+S RDG++LAEV R
Sbjct:   59 IKAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTR 112
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KGZ1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.690e-14
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  212 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 265
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.010e-14
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++I+R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  285 IEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 338
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KWF3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWF3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-13
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  214 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 267
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.220e-13
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  362 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 415
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5JR90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR90_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.230e-13
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  327 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 380
[Close]
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Match: A0A6H5KIP3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.230e-13
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VKIMRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVVR 162
            ++++R D+GGE T  E  ++C E+A+K EFA TNTPQ++G+SERDG+TLA V R
Sbjct:  280 IEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTR 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45081.11342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEV0_9PHAE7.590e-1555.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFV1_9PHAE1.020e-1457.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAY3_9PHAE1.410e-1455.56Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KV62_9PHAE4.660e-1455.56Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KGZ1_9PHAE6.690e-1455.56Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L4X4_9PHAE9.010e-1457.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWF3_9PHAE1.180e-1355.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQY8_9PHAE1.220e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR90_9PHAE1.230e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP3_9PHAE1.230e-1355.56Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45081contigH-paniculata_contig45081:195..359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog4081.Solyc06g060030.1.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930353.392917-CDS-H-paniculata_contig45081:194..3501622930353.392917-CDS-H-paniculata_contig45081:194..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45081 195..350 -
1691481254.22327-CDS-H-paniculata_contig45081:194..3501691481254.22327-CDS-H-paniculata_contig45081:194..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45081 195..350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930353.411249-UTR-H-paniculata_contig45081:350..3591622930353.411249-UTR-H-paniculata_contig45081:350..359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45081 351..359 -
1691481254.2350495-UTR-H-paniculata_contig45081:350..3591691481254.2350495-UTR-H-paniculata_contig45081:350..359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45081 351..359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45081.11342.1prot_H-paniculata_contig45081.11342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45081 195..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45081.11342.1

>prot_H-paniculata_contig45081.11342.1 ID=prot_H-paniculata_contig45081.11342.1|Name=mRNA_H-paniculata_contig45081.11342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MRTDRGGEYTSGEFESFCDETAVKHEFACTNTPQQVGISERDGRTLAEVV
R*
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mRNA from alignment at H-paniculata_contig45081:195..359-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45081.11342.1 ID=mRNA_H-paniculata_contig45081.11342.1|Name=mRNA_H-paniculata_contig45081.11342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig45081:195..359- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGATCATGAGAACGGACCGAGGCGGGGAGTACACCTCAGGAGAGTT
CGAGAGCTTCTGCGACGAGACAGCGGTCAAGCATGAGTTCGCCTGTACCA
ACACGCCACAGCAAGTGGGGATCTCGGAGCGCGACGGGAGGACGCTGGCC
GAAGTCGTGCGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig45081:195..359-

>mRNA_H-paniculata_contig45081.11342.1 ID=mRNA_H-paniculata_contig45081.11342.1|Name=mRNA_H-paniculata_contig45081.11342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig45081:195..359- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAACGGACCGAGGCGGGGAGTACACCTCAGGAGAGTTCGAGAGCTT
CTGCGACGAGACAGCGGTCAAGCATGAGTTCGCCTGTACCAACACGCCAC
AGCAAGTGGGGATCTCGGAGCGCGACGGGAGGACGCTGGCCGAAGTCGTG
CGGTAGATGAGAACGGACCGAGGCGGGGAGTACACCTCAGGAGAGTTCGA
GAGCTTCTGCGACGAGACAGCGGTCAAGCATGAGTTCGCCTGTACCAACA
CGCCACAGCAAGTGGGGATCTCGGAGCGCGACGGGAGGACGCTGGCCGAA
GTCGTGCGGTAG
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