mRNA_H-paniculata_contig45048.11334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45048.11334.1
Unique NamemRNA_H-paniculata_contig45048.11334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: D7FV66_ECTSI (Postmeiotic segregation increased 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV66_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.930e-45
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLVRK 342
            DAGAKHVEVKLKEFG+DLIEVSDNGSGVSPSNYE LALKYHTSKL+ FSDL  V SFGFRGEALSSLCELAGSFSVTTRT+ ESVGVKL Y RNGK++ K
Sbjct:   39 DAGAKHVEVKLKEFGVDLIEVSDNGSGVSPSNYEGLALKYHTSKLATFSDLTGVRSFGFRGEALSSLCELAGSFSVTTRTADESVGVKLAYGRNGKMLGK 138
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: A0A835YM26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM26_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.140e-42
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLVRK 342
            DAGA HVEVKL+EFGLDLIEVSDNGSGV P NYE LALKYHTSKL+ F+DL ++ SFGFRGEALSSLCELAGSF VTTRT+ ++VGVKLTY+R GKLV K
Sbjct:   37 DAGATHVEVKLREFGLDLIEVSDNGSGVPPHNYEGLALKYHTSKLTEFNDLKSIASFGFRGEALSSLCELAGSFVVTTRTADQAVGVKLTYNRAGKLVSK 136
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: W7T722_9STRA (Dna mismatch repair protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T722_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.520e-37
Identity = 65/98 (66.33%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLV 336
            DAGA  VEVKLK +G++ IEVSDNGSGV+P N+++L LKYHTSKLS F+DL +V SFGFRGEALSSLCE+AG+F V+TR  +E++G K+ YDR+GK++
Sbjct:  122 DAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKIL 219
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: K8Z7Z8_NANGC (DNA mismatch repair protein PMS2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7Z8_NANGC)

HSP 1 Score: 128 bits (321), Expect = 4.710e-35
Identity = 61/92 (66.30%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:   61 VEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLV 336
            VEVKLK +G++ IEVSDNGSGV+P N+++L LKYHTSKLS F+DL +V SFGFRGEALSSLCE+AG+F V+TR  +E +G K+ YDR+GK++
Sbjct:   39 VEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEDIGAKIVYDRSGKIL 130
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: A0A2P4XQ12_9STRA (Mismatch repair endonuclease pms1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ12_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.290e-33
Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLVR 339
            DAGA  +EVKLKEFG D  EVSDNG GV+P NY  LA K++TSK+S+F D+  V SFGFRGEALSS+CELA SF+V TRT  E+VGV L YD +GK+V+
Sbjct:   38 DAGATQIEVKLKEFGRDAFEVSDNGVGVAPENYAFLARKHYTSKISSFEDIETVASFGFRGEALSSICELAKSFTVCTRTKDETVGVLLEYDASGKVVK 136
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: A0A4D9CZ00_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ00_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.030e-32
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDR 321
            DAGA  VEVKLK +G++ IEVSDNGSGV+P N+++L LKYHTSKLS F+DL +V SFGFRGEALSSLCE+AG+F V+TR  +E++G K+ YDR
Sbjct:   93 DAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDR 185
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: M4C6J1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6J1_HYAAE)

HSP 1 Score: 120 bits (301), Expect = 1.930e-32
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLV 336
            DAGA  +EVKL+EFG D  EVSDNG+GV+P NY +LA K+ TSK+  F DL  V SFGFRGEALS++CELA +F+V TRT++E+VG  L YD +G LV
Sbjct:   46 DAGASQIEVKLQEFGRDAFEVSDNGAGVAPENYAALARKHFTSKIRQFEDLARVASFGFRGEALSAICELAATFTVCTRTANETVGALLKYDVSGALV 143
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: A0A0W8DAC7_PHYNI (DNA_mis_repair domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DAC7_PHYNI)

HSP 1 Score: 126 bits (317), Expect = 4.970e-32
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLVR 339
            DAGA  +EVKLKEFG D  EV DNG+GV+P NY SLA K++TSK+S+F D+  V SFGFRGEALSS+CELA SF+V TRT +++VG+ L YD +G LV+
Sbjct:   40 DAGATQIEVKLKEFGRDAFEVGDNGAGVTPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTKNDAVGMLLEYDASGTLVK 138
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BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: A0A833X1G2_PHYIN (MutL C terminal dimerization domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X1G2_PHYIN)

HSP 1 Score: 127 bits (320), Expect = 6.400e-32
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLVR 339
            DAGA  +EVKLKEFG D  EVSDNG+GV+P NY SLA K++TSK+S+F D+  V SFGFRGEALSS+CELA SF+V TRT +++VG  L YD +G LV+
Sbjct:   40 DAGATQIEVKLKEFGRDAFEVSDNGAGVAPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTQNDAVGTLLMYDASGALVK 138
[Close]
BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Match: A0A2P4YBT7_9STRA (Mismatch repair endonuclease pms1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YBT7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.010e-32
Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:   43 DAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESLALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVGVKLTYDRNGKLVR 339
            DAGA  +EVKLKEFG D  EVSDNG GV+P NY  LA K++TSK+S+F D+  V SFGFRGEALSS+CELA SF+V TRT  E+VGV L YD +GK+V+
Sbjct:   38 DAGATQIEVKLKEFGRDAFEVSDNGVGVAPENYAFLARKHYTSKISSFEDIETVASFGFRGEALSSICELAKSFTVCTRTKDETVGVLLEYDASGKVVK 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45048.11334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV66_ECTSI1.930e-4586.00Postmeiotic segregation increased 2 n=2 Tax=Ectoca... [more]
A0A835YM26_9STRA5.140e-4280.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7T722_9STRA4.520e-3766.33Dna mismatch repair protein n=1 Tax=Nannochloropsi... [more]
K8Z7Z8_NANGC4.710e-3566.30DNA mismatch repair protein PMS2 n=1 Tax=Nannochlo... [more]
A0A2P4XQ12_9STRA1.290e-3365.66Mismatch repair endonuclease pms1 (Fragment) n=1 T... [more]
A0A4D9CZ00_9STRA1.030e-3267.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
M4C6J1_HYAAE1.930e-3262.24Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0W8DAC7_PHYNI4.970e-3263.64DNA_mis_repair domain-containing protein n=1 Tax=P... [more]
A0A833X1G2_PHYIN6.400e-3264.65MutL C terminal dimerization domain n=1 Tax=Phytop... [more]
A0A2P4YBT7_9STRA9.010e-3265.66Mismatch repair endonuclease pms1 n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45048contigH-paniculata_contig45048:1004..1345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue9.2e-40
Seed eggNOG ortholog2880.D7FV66
Preferred namePms1
KEGG koko:K10858
KEGG Pathwayko03430,ko03460,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0015630,GO:0016020,GO:0016445,GO:0016446,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022414,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061458,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363,GO:1990391,GO:1990904
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1978@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930352.4239838-CDS-H-paniculata_contig45048:1003..13451622930352.4239838-CDS-H-paniculata_contig45048:1003..1345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45048 1004..1345 +
1691481253.8074856-CDS-H-paniculata_contig45048:1003..13451691481253.8074856-CDS-H-paniculata_contig45048:1003..1345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45048 1004..1345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45048.11334.1prot_H-paniculata_contig45048.11334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45048 1004..1345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45048.11334.1

>prot_H-paniculata_contig45048.11334.1 ID=prot_H-paniculata_contig45048.11334.1|Name=mRNA_H-paniculata_contig45048.11334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
IHRPATRTKRAHMQDAGAKHVEVKLKEFGLDLIEVSDNGSGVSPSNYESL
ALKYHTSKLSAFSDLMAVTSFGFRGEALSSLCELAGSFSVTTRTSSESVG
VKLTYDRNGKLVRK
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mRNA from alignment at H-paniculata_contig45048:1004..1345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45048.11334.1 ID=mRNA_H-paniculata_contig45048.11334.1|Name=mRNA_H-paniculata_contig45048.11334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig45048:1004..1345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCACCGGCCCGCCACCCGAACAAAACGTGCACACATGCAGGACGCCGG
AGCGAAGCATGTGGAGGTGAAGCTGAAGGAGTTCGGCCTTGATCTGATCG
AGGTCTCGGACAACGGCTCGGGAGTGTCGCCGTCCAACTATGAGAGCCTT
GCCTTGAAATACCACACATCGAAGCTGTCGGCTTTCTCAGACCTGATGGC
CGTGACCTCGTTCGGATTCAGAGGGGAGGCGCTAAGCTCTCTGTGCGAGC
TCGCCGGCTCGTTCTCGGTGACGACGAGGACCAGTAGCGAGAGCGTGGGA
GTTAAGCTTACCTACGACCGCAACGGAAAGCTTGTGAGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig45048:1004..1345+

>mRNA_H-paniculata_contig45048.11334.1 ID=mRNA_H-paniculata_contig45048.11334.1|Name=mRNA_H-paniculata_contig45048.11334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig45048:1004..1345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCACCGGCCCGCCACCCGAACAAAACGTGCACACATGCAGGACGCCGG
AGCGAAGCATGTGGAGGTGAAGCTGAAGGAGTTCGGCCTTGATCTGATCG
AGGTCTCGGACAACGGCTCGGGAGTGTCGCCGTCCAACTATGAGAGCCTT
GCCTTGAAATACCACACATCGAAGCTGTCGGCTTTCTCAGACCTGATGGC
CGTGACCTCGTTCGGATTCAGAGGGGAGGCGCTAAGCTCTCTGTGCGAGC
TCGCCGGCTCGTTCTCGGTGACGACGAGGACCAGTAGCGAGAGCGTGGGA
GTTAAGCTTACCTACGACCGCAACGGAAAGCTTGTGAGAAAGATCCACCG
GCCCGCCACCCGAACAAAACGTGCACACATGCAGGACGCCGGAGCGAAGC
ATGTGGAGGTGAAGCTGAAGGAGTTCGGCCTTGATCTGATCGAGGTCTCG
GACAACGGCTCGGGAGTGTCGCCGTCCAACTATGAGAGCCTTGCCTTGAA
ATACCACACATCGAAGCTGTCGGCTTTCTCAGACCTGATGGCCGTGACCT
CGTTCGGATTCAGAGGGGAGGCGCTAAGCTCTCTGTGCGAGCTCGCCGGC
TCGTTCTCGGTGACGACGAGGACCAGTAGCGAGAGCGTGGGAGTTAAGCT
TACCTACGACCGCAACGGAAAGCTTGTGAGAAAG
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