mRNA_H-paniculata_contig45047.11333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45047.11333.1
Unique NamemRNA_H-paniculata_contig45047.11333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.520e-21
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            VY DNTA LH + + ++S  TKH+ALR FF+RELV  GK+++HY  T D LA  GTK+ +  RF++LM+RI NF+
Sbjct:  137 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNFD 211
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.530e-20
Identity = 39/76 (51.32%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFNK 228
            +++D+TA L+VI + T+SG TKH+ALR F++R++V+ G++++HY+ T D LAD GT+YL+ QR +YL+++IKNF K
Sbjct:  703 LFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNFGK 778
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.110e-20
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            VY DNTA LH + + ++S  TKH+ALR FF+RELV  GK+++HYV T D LAD GTK+ +  RF++LM+ I NF+
Sbjct:  922 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNFD 996
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.970e-20
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            VY DNTA LH + + ++S  TKH+ALR FF+RELV  GK+++HYV T D LAD GTK+ +  RF++LM+ I NF+
Sbjct: 1591 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNFD 1665
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.510e-19
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            VY DNTA LH + + ++S  TKH+ALR FF+RELV  GK+++HYV T D LAD GTK+ +  RF++LM+ I N +
Sbjct:  583 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNLD 657
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.680e-19
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            VY DNTA LH + + ++S  TKH+ALR FF+RELV  GK+++HY  T D LAD GTK+ +  RF +LM+ I NF+
Sbjct:  362 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFD 436
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.140e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            +Y DNTA LH + + ++S  TKH+ALR FF+R+LV  GK+ +H+V T    AD GTK+L+  RF++L+N IKNFN
Sbjct:  280 LYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFN 354
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-18
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIKNFN 225
            +Y DNTA LH + + +YS  TKH+ALR FF+RELV  G++A+HYV      AD GTK+L+  RF+ L+N IKNFN
Sbjct:  645 LYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFN 719
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.200e-18
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   13 NTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTKYLSTQRFRYLMNRIK 216
            NTA LHVI + T+SG TKHVALR F++RE+V+ G++++HY+ T D LAD GTK+L+ QR + L+++IK
Sbjct:  619 NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIK 686
[Close]
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.610e-16
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   16 TAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQLADNGTK-YLSTQRFRYLMNRIKNFN 225
            TA LH + + ++S  TKH+ALR FF+RELV  GK+++HYV T D LAD GTK +++  RF++LM+ + NF+
Sbjct:  189 TATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNFD 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45047.11333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE7.520e-2153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE1.530e-2051.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE2.110e-2054.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE3.970e-2054.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE2.510e-1953.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE2.680e-1953.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J9N2_9PHAE1.140e-1852.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE1.200e-1854.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE4.200e-1855.88CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KCX7_9PHAE2.610e-1650.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45047contigH-paniculata_contig45047:115..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930352.3726494-CDS-H-paniculata_contig45047:114..3451622930352.3726494-CDS-H-paniculata_contig45047:114..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45047 115..345 +
1691481253.782947-CDS-H-paniculata_contig45047:114..3451691481253.782947-CDS-H-paniculata_contig45047:114..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45047 115..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45047.11333.1prot_H-paniculata_contig45047.11333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45047 115..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45047.11333.1

>prot_H-paniculata_contig45047.11333.1 ID=prot_H-paniculata_contig45047.11333.1|Name=mRNA_H-paniculata_contig45047.11333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VYLDNTAALHVIASSTYSGMTKHVALRSFFVRELVETGKVAVHYVETADQ
LADNGTKYLSTQRFRYLMNRIKNFNK*
back to top

mRNA from alignment at H-paniculata_contig45047:115..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45047.11333.1 ID=mRNA_H-paniculata_contig45047.11333.1|Name=mRNA_H-paniculata_contig45047.11333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig45047:115..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACCTCGATAATACGGCGGCTCTTCACGTGATTGCTAGCAGCACGTA
CAGCGGAATGACGAAACACGTGGCACTGCGTTCCTTCTTCGTGAGGGAAT
TGGTGGAAACGGGGAAGGTTGCCGTTCACTACGTGGAAACAGCGGATCAA
CTTGCTGATAATGGAACGAAATATCTATCAACACAGAGATTCCGTTATCT
TATGAATCGCATCAAGAATTTCAACAAATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig45047:115..345+

>mRNA_H-paniculata_contig45047.11333.1 ID=mRNA_H-paniculata_contig45047.11333.1|Name=mRNA_H-paniculata_contig45047.11333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig45047:115..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACCTCGATAATACGGCGGCTCTTCACGTGATTGCTAGCAGCACGTA
CAGCGGAATGACGAAACACGTGGCACTGCGTTCCTTCTTCGTGAGGGAAT
TGGTGGAAACGGGGAAGGTTGCCGTTCACTACGTGGAAACAGCGGATCAA
CTTGCTGATAATGGAACGAAATATCTATCAACACAGAGATTCCGTTATCT
TATGAATCGCATCAAGAATTTCAACAAATAAGTCTACCTCGATAATACGG
CGGCTCTTCACGTGATTGCTAGCAGCACGTACAGCGGAATGACGAAACAC
GTGGCACTGCGTTCCTTCTTCGTGAGGGAATTGGTGGAAACGGGGAAGGT
TGCCGTTCACTACGTGGAAACAGCGGATCAACTTGCTGATAATGGAACGA
AATATCTATCAACACAGAGATTCCGTTATCTTATGAATCGCATCAAGAAT
TTCAACAAATAA
back to top