mRNA_H-paniculata_contig4504.11331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4504.11331.1
Unique NamemRNA_H-paniculata_contig4504.11331.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A2H3J453_WOLCO (Uncharacterized protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J453_WOLCO)

HSP 1 Score: 60.1 bits (144), Expect = 4.430e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSLDSA H TYRISLRSSS+ +PR PSL+V+
Sbjct:    9 ARCVQRFDDSLDSAIHITYRISLRSSSMREPRDPSLRVV 47
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BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A0P9EDQ3_RHOGW (Uncharacterized protein n=2 Tax=Basidiomycota TaxID=5204 RepID=A0A0P9EDQ3_RHOGW)

HSP 1 Score: 58.2 bits (139), Expect = 2.440e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKVL
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVL 47
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BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A1Y2ACV0_9TREE (Uncharacterized protein n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2ACV0_9TREE)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKVL
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVL 47
[Close]
BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A0P9GVD2_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9GVD2_RHOGW)

HSP 1 Score: 58.2 bits (139), Expect = 3.030e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKVL
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVL 47
[Close]
BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A8K0JE16_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JE16_9TREE)

HSP 1 Score: 58.2 bits (139), Expect = 4.470e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKVL
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVL 47
[Close]
BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A316V2G1_9BASI (Uncharacterized protein n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V2G1_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 5.050e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYR+SLRSSS+G+PR P  KV+
Sbjct:    9 ARCVQRFDDSLNSAIHITYRVSLRSSSMGEPRDPLSKVV 47
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BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A1Y2BR63_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2BR63_9BASI)

HSP 1 Score: 57.0 bits (136), Expect = 6.090e-10
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKV 114
            ARCVQ FDDSL+SA H TY ISLRSSS+ KPR P LKV
Sbjct:    9 ARCVQRFDDSLNSAIHITYHISLRSSSMSKPRDPLLKV 46
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BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: R7SKF8_DICSQ (Uncharacterized protein n=1 Tax=Dichomitus squalens (strain LYAD-421) TaxID=732165 RepID=R7SKF8_DICSQ)

HSP 1 Score: 57.0 bits (136), Expect = 6.230e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKV+
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVV 47
[Close]
BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 57.0 bits (136), Expect = 6.530e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKV+
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVV 47
[Close]
BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Match: A0A067LQX6_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067LQX6_9AGAM)

HSP 1 Score: 57.0 bits (136), Expect = 7.180e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL 117
            ARCVQ FDDSL+SA H TYRISLRSSS+ +PR P LKV+
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVV 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4504.11331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H3J453_WOLCO4.430e-1176.92Uncharacterized protein n=1 Tax=Wolfiporia cocos (... [more]
A0A0P9EDQ3_RHOGW2.440e-1076.92Uncharacterized protein n=2 Tax=Basidiomycota TaxI... [more]
A0A1Y2ACV0_9TREE2.500e-1076.92Uncharacterized protein n=1 Tax=Naematelia encepha... [more]
A0A0P9GVD2_RHOGW3.030e-1076.92Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]
A0A8K0JE16_9TREE4.470e-1076.92Uncharacterized protein n=1 Tax=Filobasidium flori... [more]
A0A316V2G1_9BASI5.050e-1071.79Uncharacterized protein n=1 Tax=Meira miltonrushii... [more]
A0A1Y2BR63_9BASI6.090e-1076.32Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
R7SKF8_DICSQ6.230e-1074.36Uncharacterized protein n=1 Tax=Dichomitus squalen... [more]
K5UIC4_PHACS6.530e-1074.36Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A067LQX6_9AGAM7.180e-1074.36Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4504contigH-paniculata_contig4504:8..124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930351.9164336-CDS-H-paniculata_contig4504:7..1241622930351.9164336-CDS-H-paniculata_contig4504:7..124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4504 8..124 +
1691481253.5578916-CDS-H-paniculata_contig4504:7..1241691481253.5578916-CDS-H-paniculata_contig4504:7..124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4504 8..124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4504.11331.1prot_H-paniculata_contig4504.11331.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4504 8..124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4504.11331.1

>prot_H-paniculata_contig4504.11331.1 ID=prot_H-paniculata_contig4504.11331.1|Name=mRNA_H-paniculata_contig4504.11331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
ARCVQNFDDSLDSASHKTYRISLRSSSLGKPRHPSLKVL
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mRNA from alignment at H-paniculata_contig4504:8..124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4504.11331.1 ID=mRNA_H-paniculata_contig4504.11331.1|Name=mRNA_H-paniculata_contig4504.11331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig4504:8..124+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCACAA
GACGTATCGCATTTCGCTGCGTTCTTCATCGCTGGGGAAGCCAAGACATC
CATCGCTGAAAGTTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig4504:8..124+

>mRNA_H-paniculata_contig4504.11331.1 ID=mRNA_H-paniculata_contig4504.11331.1|Name=mRNA_H-paniculata_contig4504.11331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig4504:8..124+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCACAA
GACGTATCGCATTTCGCTGCGTTCTTCATCGCTGGGGAAGCCAAGACATC
CATCGCTGAAAGTTTTAGCAAGATGCGTTCAAAATTTTGATGATTCACTG
GATTCTGCAAGTCACAAGACGTATCGCATTTCGCTGCGTTCTTCATCGCT
GGGGAAGCCAAGACATCCATCGCTGAAAGTTTTA
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