mRNA_H-paniculata_contig4503.11330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4503.11330.1
Unique NamemRNA_H-paniculata_contig4503.11330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4503.11330.1 vs. uniprot
Match: D8LDE1_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDE1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.350e-11
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 2 
Query:    5 AQVAVYVSWFCFRIMLPFYVLFLLWTRVICNYVEEESGVIPAVIIVPIVTIIFIHRFCFVLTPGLYKRLRYGSKIEPESSATLPIAASSASTPATTYLNP-DPAGGST--AYHPLD 343
            A  A+Y  WF FRI+LP Y+L L+WT++  N   EE+ ++P+++   I+ +  I  F F+LTP +Y R++YG K +P    T   AASSA  P    L   D   GST  AYH LD
Sbjct:  182 AHGAMYSLWFVFRILLPLYLLLLIWTKIAQNISTEEACLVPSMVCAHIIAVFCIGVFFFLLTPEVYCRIKYGDKDDPNVDTTSVGAASSA--PGAMELGGGDGRRGSTGGAYHDLD 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4503.11330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDE1_ECTSI4.350e-1142.24TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4503contigH-paniculata_contig4503:5842..8963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog2880.D8LDE1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.glutamate reuptake
EggNOG OGsKOG4561@1,KOG4561@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size881
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4503.11330.1prot_H-paniculata_contig4503.11330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4503 5888..8596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930351.7842233-UTR-H-paniculata_contig4503:5841..58871622930351.7842233-UTR-H-paniculata_contig4503:5841..5887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4503 5842..5887 +
1691481253.5004003-UTR-H-paniculata_contig4503:5841..58871691481253.5004003-UTR-H-paniculata_contig4503:5841..5887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4503 5842..5887 +
1622930351.8817468-UTR-H-paniculata_contig4503:8596..89631622930351.8817468-UTR-H-paniculata_contig4503:8596..8963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4503 8597..8963 +
1691481253.5477028-UTR-H-paniculata_contig4503:8596..89631691481253.5477028-UTR-H-paniculata_contig4503:8596..8963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4503 8597..8963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930351.8124835-CDS-H-paniculata_contig4503:5887..59471622930351.8124835-CDS-H-paniculata_contig4503:5887..5947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 5888..5947 +
1691481253.5114744-CDS-H-paniculata_contig4503:5887..59471691481253.5114744-CDS-H-paniculata_contig4503:5887..5947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 5888..5947 +
1622930351.8327124-CDS-H-paniculata_contig4503:6490..65881622930351.8327124-CDS-H-paniculata_contig4503:6490..6588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 6491..6588 +
1691481253.5206444-CDS-H-paniculata_contig4503:6490..65881691481253.5206444-CDS-H-paniculata_contig4503:6490..6588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 6491..6588 +
1622930351.851558-CDS-H-paniculata_contig4503:7786..79521622930351.851558-CDS-H-paniculata_contig4503:7786..7952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 7787..7952 +
1691481253.5298007-CDS-H-paniculata_contig4503:7786..79521691481253.5298007-CDS-H-paniculata_contig4503:7786..7952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 7787..7952 +
1622930351.8681207-CDS-H-paniculata_contig4503:8452..85961622930351.8681207-CDS-H-paniculata_contig4503:8452..8596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 8453..8596 +
1691481253.5385623-CDS-H-paniculata_contig4503:8452..85961691481253.5385623-CDS-H-paniculata_contig4503:8452..8596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4503 8453..8596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4503.11330.1

>prot_H-paniculata_contig4503.11330.1 ID=prot_H-paniculata_contig4503.11330.1|Name=mRNA_H-paniculata_contig4503.11330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MLPFYVLFLLWTRVICNYVEEESGVIPAVIIVPIVTIIFIHRFCFVLTPG
LYKRLRYGSKIEPESSATLPIAASSASTPATTYLNPDPAGGSTAYHPLDV
PRETPARPTSLAESGGNAANDGTKCWNTKEGVVLLASSSRDLKKGLLTPA
SSRSP*
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mRNA from alignment at H-paniculata_contig4503:5842..8963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4503.11330.1 ID=mRNA_H-paniculata_contig4503.11330.1|Name=mRNA_H-paniculata_contig4503.11330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3122bp|location=Sequence derived from alignment at H-paniculata_contig4503:5842..8963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCGCAAGTAGCGGTGTACGTTTCATGGTTTTGCTTCCGGATAATGC
TCCCGTTTTACGTGCTGTTTTTGCTGTGGACGCGAGTTATTTGCAACTAT
GTGGAGGTAGGGAAGAAGGTTGATATAAAACTGACACAACGTATTATGCG
GTCGTCTTTCTGGGGTCATATGAACGAGCACTTGGAACGGACAAACGTTT
GGGGTCATGCGTTTCCAAATGCTTGCATTTAACACACTTGATACCGCCAG
CATAAGGCAGCCTACTAATTGCAGACCCCCAAGATTGTTTGCATCTCCCT
CCTTATTCTCTGCCTCTTTGGGTTTTCGGCCAGCGGAGGTGGCAGGTATT
ATGGTAGTTTAGTGTAGATCATGGGGAAGAATTCGCCCCTCGGATGTTTT
TTGGCAACAAAGTAACGGGACACATGGTGCGGGGACAGAGGCCGAAGACT
ACGCCCGTGACAGCTGTTTCGACGGAAGCGTGGTTCGGCATTTGCAGTCC
ACACTCTACAATAGCGCAGAGTTGGACAGTAAAATCCGTGCACACTCGGA
TTTATCCACAGGTTCTAGAATCATGGAACTGTTTTTTGGACGCCTCTTCA
ATGGACACGTTTTCTCCTTGATTAGTGCTGCGTTTTTTTCCTGTCCCAGG
AGGAAAGCGGCGTGATCCCGGCCGTGATAATCGTGCCGATCGTCACTATT
ATCTTCATCCACCGGTTCTGCTTTGTCCTCACTCCGGGGCTTTACAAGTG
GGTGTAACCAAAACTATTTCCGTCCTCGAGGCAACGCTAGGTGTTGAACA
ATGAAGGGTGTTCATTGAATGTTGTGTTTGTGCAATGTCCGTGGTGGAGT
GGGTGGAAAACGTGATGAGGGACCACGCCGCTAGTTCGTGTAGCCTACCC
ATTCCTTGTTTCTCTTCACGTAAGCACCAAAAGTGTACTGCAACACAGAG
ACCAAATCGAATACATGACGGCACAGTGGTATGTGGCTGGTATTCTCCCC
CCTCCACATTGTTCGGGTATACTCTGCACCTCCCTCTAATGCCCGTAATC
GTGCCCAAACTGCGTGCATTTCCCCCCTTCTCTCTAGGTGTACTTTCGTA
GACCATGAAAAGCGTAGAACGCATTTGAACATGGAGAAAATTATTTGCCA
CGCGGCATTCCATAGTGCAGACTAAATAGCTCACTCGATTGATGATTTCA
TGGCCGACGATCGTGCCTAGACTTCGTAAGTCCACTGACCAGCCAGCCAA
TAAAGTCGAAAGCAGTGGCGACCAGTACTTCCGAAAACAAACTCAACACC
CCTTGGGTAAGTAACACACTGCTATGTTTCGTCCAATAATATTAACCAAG
TTTTCCTAAATATAGAAGGGCGCTGTGTAGGCAGCTTTCAAGCGCCAAAG
GCTGTTACTTTGCTGCCATTTTGGCGTCGGCGTAGCTCTATCGCTATCTA
CAATTATAGTAGTGAATTGGTCTCTACGAGGGGGCGATCGCCGAGGTGTT
GCATTCGCCGCGACTGTTGTAGTGTGCACAGAACAACAGATTGATGAATA
TTTTCCCTTGATTTTCCCCCCCTTGGCATTTCAAGTCGCTGGTGACTGTG
AGTGCACCCATTATGTTATTACGGGCTAAAACATCTCAGCGTGCTTCTTG
TATTATATGTAGAAATCTGCTGCCAAGTAGGATACATGGTTGGAACTGGT
GAGGTGTGCCCACTGTTGTACTAAGCTTCGAGGGCGGTAAATGGGAGTAC
TGCTGTTGTTTCGTGGTCCCGATTGTGTCATGCTGTCCCTACGCACTCTT
ACATGCACTCGGTAGAGTCATCTCTCTCTCTGGTAGGTGCCATGTTTCAC
GTGTCATTTCTGCCCCACGTTGTGCTTTGGGTCCAGCTGCTCGACCGTGA
AAGGATCATACCCACGCACATATCCCTCTCTGTGGCCAACGACAGACGAC
TGCGCTATGGAAGTAAGATTGAGCCGGAATCCAGCGCTACACTCCCAATC
GCCGCCTCCAGTGCCTCTACACCCGCGACGACGTACTTGAACCCCGATCC
GGCAGGAGGCAGCACCGCTTACCACCCGCTAGATGTCCCCAGAGAGACGC
CAGCTCGACCGGTACGCGTTGGGTACACAAAACGTTGGCTCGCCATTTGT
TTTTGAGCCTCTTTTCCCCTTGTATTTCTTGGTGTCTTAGCGGCCAGGGT
CGAACGAACACCAAGCGCTTGGTAAGGCTTTCGGGAAGGGAGGGGGGGTG
CGGGGGCGAAGGGTGATACTACTCCTGTGCATGCCATGTGCCTCTTGATG
GTGTTGTCAACGGGTGATGGTTCTGCGCTTGTCACAGGTTTTGACGGGCG
TGCATGTATGCGGAGAGGAATGGGTCTAGGGGGACTTCGCCATGTCCCGA
TATCTAGCTCTCACTCTTGTGTTTCAATGCTGATACTATTTCGTGATCTG
AGCTGCTTTACCCTCTGTAGCTCACGAGCCCCCCCCCCCCCCGCCGCCTT
CCCTCTCTGTATTTTACGTGAAGCTTGACGTTAGATATGTACCCACATAA
CCTTGTTTTACTTGAAAAGCTGGCACATACGTGTGAAAACTTGACGGTTG
TTTTCGTTCAGACGAGCTTGGCGGAGAGCGGCGGGAATGCCGCGAATGAT
GGGACCAAGTGTTGGAACACGAAGGAGGGGGTGGTATTGCTGGCTTCGTC
TAGTCGCGACCTCAAGAAAGGCTTGTTGACCCCGGCATCTTCACGTTCGC
CATGAAGGTTTATGGTGACGGGGAAACCGGATCAAGCGAATAGGAGTTCG
GAATCGTCATGATGTATAGATTGCCAGAAAGCAGTATGGTCGACGACGCA
ATTCACTTATGATAACAGAAATACAGCCGGCACGTGCTGACAAAACAGCA
AAAAAACGAGGAAGTAGCATGCGGAGTAAATGTAGCGACGGGGTCATGCA
TAGAGATAAGCAGAAAAAATACTTCGAGCAATAGACTTCGTGAACTGCAA
TAATTTTTCAGTACATGTACCTGACTGTAGCTAAGTTGATGAGTTCAACT
GGCAGCCAGGTCCACAACTCCAAAAATGATATTAGTCGCGCTTTGTCGGA
GTGCGGTGGGGCCTAAAGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4503:5842..8963+

>mRNA_H-paniculata_contig4503.11330.1 ID=mRNA_H-paniculata_contig4503.11330.1|Name=mRNA_H-paniculata_contig4503.11330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig4503:5842..8963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCCGTTTTACGTGCTGTTTTTGCTGTGGACGCGAGTTATTTGCAA
CTATGTGGAGATGCTCCCGTTTTACGTGCTGTTTTTGCTGTGGACGCGAG
TTATTTGCAACTATGTGGAGGAGGAAAGCGGCGTGATCCCGGCCGTGATA
ATCGTGCCGATCGTCACTATTATCTTCATCCACCGGTTCTGCTTTGTCCT
CACTCCGGGGCTTTACAAGAGGAAAGCGGCGTGATCCCGGCCGTGATAAT
CGTGCCGATCGTCACTATTATCTTCATCCACCGGTTCTGCTTTGTCCTCA
CTCCGGGGCTTTACAAACGACTGCGCTATGGAAGTAAGATTGAGCCGGAA
TCCAGCGCTACACTCCCAATCGCCGCCTCCAGTGCCTCTACACCCGCGAC
GACGTACTTGAACCCCGATCCGGCAGGAGGCAGCACCGCTTACCACCCGC
TAGATGTCCCCAGAGAGACGCCAGCTCGACCGACGACTGCGCTATGGAAG
TAAGATTGAGCCGGAATCCAGCGCTACACTCCCAATCGCCGCCTCCAGTG
CCTCTACACCCGCGACGACGTACTTGAACCCCGATCCGGCAGGAGGCAGC
ACCGCTTACCACCCGCTAGATGTCCCCAGAGAGACGCCAGCTCGACCGAC
GAGCTTGGCGGAGAGCGGCGGGAATGCCGCGAATGATGGGACCAAGTGTT
GGAACACGAAGGAGGGGGTGGTATTGCTGGCTTCGTCTAGTCGCGACCTC
AAGAAAGGCTTGTTGACCCCGGCATCTTCACGTTCGCCATGAACGAGCTT
GGCGGAGAGCGGCGGGAATGCCGCGAATGATGGGACCAAGTGTTGGAACA
CGAAGGAGGGGGTGGTATTGCTGGCTTCGTCTAGTCGCGACCTCAAGAAA
GGCTTGTTGACCCCGGCATCTTCACGTTCGCCATGA
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