mRNA_H-paniculata_contig4501.11328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4501.11328.1
Unique NamemRNA_H-paniculata_contig4501.11328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4501.11328.1 vs. uniprot
Match: D7FRP9_ECTSI (Alpha-type protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.070e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:   63 MRKHVVFVIDGSKSMDKMDTFDKEEGHRIRRVDAVLDCIFDFIEDQRNSSFSSSLDRYSVVSFNDNAR 266
            MRKHVVFV+D S+SM++MD FD  +G R RR+DAVLDC F+FIEDQ  +  SSS DRYSV+SFND A+
Sbjct:    1 MRKHVVFVVDASRSMERMDVFD--QGERKRRIDAVLDCCFEFIEDQLANQHSSSRDRYSVISFNDVAK 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4501.11328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRP9_ECTSI2.070e-1966.18Alpha-type protein kinase domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4501contigH-paniculata_contig4501:1139..4045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog2880.D7FRP9
KEGG koko:K08292
KEGG Pathwayko04152,ko04921,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000278,GO:0000281,GO:0000331,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007010,GO:0007033,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009653,GO:0009987,GO:0016043,GO:0016050,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0022402,GO:0030029,GO:0030036,GO:0030554,GO:0030587,GO:0031033,GO:0031038,GO:0031156,GO:0031288,GO:0031410,GO:0031982,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0033298,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045055,GO:0046903,GO:0048471,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051703,GO:0051704,GO:0061640,GO:0065007,GO:0070177,GO:0071704,GO:0071840,GO:0090702,GO:0097159,GO:0097367,GO:0097708,GO:0099120,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903047
EggNOG free text desc.elongation factor-2 kinase activity
EggNOG OGs28NQ8@1,2QVA3@2759
EC2.7.11.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size344
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4501.11328.1prot_H-paniculata_contig4501.11328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4501 1139..3998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930351.5269642-CDS-H-paniculata_contig4501:1138..12881622930351.5269642-CDS-H-paniculata_contig4501:1138..1288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4501 1139..1288 -
1691481253.3878057-CDS-H-paniculata_contig4501:1138..12881691481253.3878057-CDS-H-paniculata_contig4501:1138..1288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4501 1139..1288 -
1622930351.5445154-CDS-H-paniculata_contig4501:3851..39981622930351.5445154-CDS-H-paniculata_contig4501:3851..3998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4501 3852..3998 -
1691481253.4051106-CDS-H-paniculata_contig4501:3851..39981691481253.4051106-CDS-H-paniculata_contig4501:3851..3998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4501 3852..3998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930351.5633323-UTR-H-paniculata_contig4501:3998..40451622930351.5633323-UTR-H-paniculata_contig4501:3998..4045Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4501 3999..4045 -
1691481253.415575-UTR-H-paniculata_contig4501:3998..40451691481253.415575-UTR-H-paniculata_contig4501:3998..4045Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4501 3999..4045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4501.11328.1

>prot_H-paniculata_contig4501.11328.1 ID=prot_H-paniculata_contig4501.11328.1|Name=mRNA_H-paniculata_contig4501.11328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MPMSHMRKHVVFVIDGSKSMDKMDTFDKEEGHRIRRVDAVLDCIFDFIED
QRNSSFSSSLDRYSVVSFNDNARIQLRAKHMCGRDLYQLRRVRWRRCL*
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mRNA from alignment at H-paniculata_contig4501:1139..4045-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4501.11328.1 ID=mRNA_H-paniculata_contig4501.11328.1|Name=mRNA_H-paniculata_contig4501.11328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2907bp|location=Sequence derived from alignment at H-paniculata_contig4501:1139..4045- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAACAAGGTGAAACACAAGCTAACGATATCATAACACAATCAGTATG
CCGATGTCTCACATGAGGAAGCATGTGGTGTTCGTCATCGATGGTTCGAA
GTCAATGGACAAGATGGATACGTTCGACAAAGAAGAGGGGCACCGCATTC
GGAGAGTGGACGCTGTTCTGGACTGTATTTTCGACTTTATCGAGGTACAA
GTAAAGAGCATACACAGCTAGTCACGATCAATAGCAGTGCCTCATCGTAT
GTGCAACATGTGTAACATGTATATTACGCTGTTTACAACAGTCCCAATGA
AAGCTTCACAAATTCCTGTTCATCAGAGCAGTGACATGGGAAACCCGAGT
GCTCGAGAGGCTGCACTGTAAAGCTCTGGCTTGTTGTGAACCCATCCATC
TTTCTCGCTAGTGTGGTGGTGAGGATGCAATATGCATATTCGTTAGCAGA
GTAGATCCGTTGCACGATTTTAACACATGCTTTGGCGCGCATCTCAAACA
AACGCCCTGTTTTATGCTCTACATCATCAACTACATGACATATATAACAT
ACATACAACATGGCGCAATTTTTTGTGCTCGCGCAATTTCTGTTCCCATT
TTATTGTTGTTGTTGCTATTTTTGTTGGTGCATAATTTGTTTTTCCCTCA
ACATACGGATCTTTCTGGTATTGTTTTAACTCTAACTCAGAGAATGCTAT
ATGTAAGCGGCATGGTTGCGGGCGATCATCGAATAGCTCTCTTGAATGAT
TCTGGTAGATTTCGAGTCATACATATGACACCGCTTTTCCTCTCTGTCCT
CCCTCCCCCTGTCCAAAGGTTAAACGCAACAAAATCTAGCACGAATGACT
TGAAAATTGTTCCCGTGCCTAAGCTCGACCGCATGCTATATATACAACAG
TATATTTCCTATTTTTTGCCCATCATCTTGGTTTCCAATTATTTGGTGCT
TGACGCGCGCTGCCGCTCCAGGACGCAGGGACGACCATATAGAACAGCGC
CTGCAGCGAAAGACGACCCCAAAACACGAAAAAAATGAAACTTGAGTACA
CTCTACGGCACTGTACCATACATCAGGGCGCTTGAGCTGCACCCCTTCGT
TACACTTGCGATATACCAGCTACCAGTATTTATCTGGGGAGGCAAGCATG
ACCATGTAAAACCCCACGAAGGTGGTGCTGGTGAAGGAAAAATGCATGGC
ATGCCGATCGCCCACTCTTGGGTCTGTCAGAGTGGTCAAACGAGACGTAA
TTCCCTTTTTCTCCGCTTCGAATTTTTTTTGTTTCGATTTTCTTGGAAAT
CGTCAACCAGCGCGGTGTTCAACGCTACAAGAAAAAATATATATATCTAC
TCCTCTATCGCAATCCGTCCTCTCTCATAAGCGCGCTAAAAGGAAAAGAC
GTGAACAAACAGGGGGGGGGGAGTATTCACGTTTCGCATGCTGCAATGGT
TAGACCGCTCACCACGCGTCCTCGGGAGGGTGGAGCTTTGCATCCCCCGG
ACAAATACGAATACTTGCAAATAGTTTTCATAAAAAAAACTGAAAGTATT
TCCTCAAGAAGTTCAGGACGTGTTCATATATATATCTATGTGCCCCGGAC
CATTTACGACTGCTAATAAAACTCGTAAATCGAATGGACAGGGGTGGGTA
CTGTATTCTATGCTGTCCGCTCATTCTGAAACTCAGGCGAATAAAACTAT
TTGCAAGTATTCGTATTATGTCCAGGGGGTGGGTGCAGCTTTGTTCCTAG
GACATCGATTTCCTACAGCCAATTGCCTCTTCCCTCGGGAGGACGGAGGT
TTGTTTCCTATCAGTGATATCCGATGGCCAATCGCTCTTTTCTACGTTCT
CAAAATATTTCTCAAGAAGGTTTTTATATAATACCTCATCTACCTCAGCC
CTCGCCTGCTAAGGGCAAGTTCTATCTCCTGGAACCACTGTCGCCTTTTT
TTTGCAATCCCAGGATTTTGAAGGCCTATCTACCGTATCCTTTGATGTTC
TCTCGTAAAGAGAGAACAAAAAATGAGGCAAACACTCGACAACCCGTTGC
GCCGGCCCTGAATAAAAGCCTCTCATATATATATATATATATATATATAT
ATACCCGTTGATGGCTGACGGATGTTTGGATGTTTATCGCAGGAGTCAAG
CAACAGGCACATCTGAGTTTTTTTTTTGTTTTTTTTTACTAGCTCGTGTC
CTTCGTTCAACCATGGACATACTTGTTTTGTCCCCCATTTTTCTAGTATC
AAAATTTGTTTAAGAATATTGTCCCCCTCCCCCGCCCTCTTTCCCTACAC
GAATACGAGTGGCGTACCTGTTGTTCGACTGTACCAAGTTGCTTTTCCGA
AAAACGACTTACCGCCGTGACTTTAGATCTAAGATGTTTTTGCTCGTGTC
TACCTACTTCTGCAATCCTCTTGAAAAACAAGTTTGCATCAGAATTTTCG
GGTTTTTTTCGTCTTGTTTTTTTTTAAGAGGGTTTCTTTCTCCACTGAGG
TGTTTTTGGTGCCCAGAGTGACCGACACAGTTGCTGACGAGACATTTCGA
ACAAGGACGGGTACGATCTATTAATCGTGGGCGAACATGAGAGAAAGACG
GAATACCGACTCCCAGGATCGCAACTTGGTTCACTGTTGTTGCTATAAAA
TAACAACCAACTAACCAACCAACCAACCAACGACACCACGACCAACTACC
GTTTTTTTCACGCAACGTTCGTTTTTGTTCCGAAAAAAACAAACCCAAAA
TGCGCAGGATCAGCGCAACAGCAGTTTTTCATCTTCCCTCGACCGGTATT
CTGTGGTGTCGTTCAACGACAACGCCAGAATACAGCTGAGAGCGAAACAC
ATGTGCGGGAGAGACCTGTACCAGCTAAGAAGGGTGAGATGGAGGAGGTG
TTTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4501:1139..4045-

>mRNA_H-paniculata_contig4501.11328.1 ID=mRNA_H-paniculata_contig4501.11328.1|Name=mRNA_H-paniculata_contig4501.11328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig4501:1139..4045- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGATGTCTCACATGAGGAAGCATGTGGTGTTCGTCATCGATGGTTC
GAAGTCAATGGACAAGATGGATACGTTCGACAAAGAAGAGGGGCACCGCA
TTCGGAGAGTGGACGCTGTTCTGGACTGTATTTTCGACTTTATCGAGATG
CCGATGTCTCACATGAGGAAGCATGTGGTGTTCGTCATCGATGGTTCGAA
GTCAATGGACAAGATGGATACGTTCGACAAAGAAGAGGGGCACCGCATTC
GGAGAGTGGACGCTGTTCTGGACTGTATTTTCGACTTTATCGAGGATCAG
CGCAACAGCAGTTTTTCATCTTCCCTCGACCGGTATTCTGTGGTGTCGTT
CAACGACAACGCCAGAATACAGCTGAGAGCGAAACACATGTGCGGGAGAG
ACCTGTACCAGCTAAGAAGGGTGAGATGGAGGAGGTGTTTATGAGATCAG
CGCAACAGCAGTTTTTCATCTTCCCTCGACCGGTATTCTGTGGTGTCGTT
CAACGACAACGCCAGAATACAGCTGAGAGCGAAACACATGTGCGGGAGAG
ACCTGTACCAGCTAAGAAGGGTGAGATGGAGGAGGTGTTTATGA
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