mRNA_H-paniculata_contig450.11325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig450.11325.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE) HSP 1 Score: 479 bits (1233), Expect = 1.930e-147 Identity = 323/661 (48.87%), Postives = 394/661 (59.61%), Query Frame = 3
Query: 126 RVVARQRAATRAQLVANLRNAAQGLATLQAKVVGEESRXXXXXXXXXQGPSSSISSPS-LSGNAHVPLLGGDTPEAIEVCSALEQCLFHRIRTKDFRGVMPFWAYLERLERLPIATAAGA--RPGPRERRLSSVRNTVGAVASCRRVSTAVGKARSWVRQCLVCKCLEACVGAVLAETRLVQVFYEPTALARCEEGSTILLRLCAALEAFDIAVDADQSALDSAPRWPILEREEEWDRRMDED--------------QARPAT-----VTAA------------SQQPLYNNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVATATSEIDKLSQGESWAQLDGVISSFSSKVDQAVQSLDGTLSELFGDKDIFGDNNSNGDSKNYNEGGRNLHRSVPASQTPLYTANSSGXXXXXSIGNADRRQAGGVRDDAGWVEIRGDTLNATSSPSLTDARYR-------------HHLHSSAQGHSTAS---------FPGGDAGLGRQG-RKGKGRVFGVPLDQLVLDPERCNKGLLDPALGVPDAVANLMEALSEPTCYNTPGIFLEESSESELFRVVKSLEKTNQVPIAAIGG--------PAWLISKITGGAXXXXXXXXXXXXKAGGVSPHALASALLFFLHRLPEPLLTFRRREAFLSCE 1913
R + QRAATRA+LV NLRNAAQ LA LQAK + + G +S + PL+GGDT EA+ +C A+EQCLFHRIR KDF GV+PFWA+LER+ERLP+ G RPGPRERRL+SVRNTVGAVAS VST +G+AR+W+RQCLVCKCLE+CV A+L E RLV+VFYEPTALARC EGS ILLRLCAALEAFD+A+D DQSALD+ PRWPILE EEEWDR AR A+ T A ++ P + XXXXXXXXXXXXX W A+A SEID+L+ G QLD V+++ SSKVD+AVQSLD T++++FGD D DN+ N A +GG RD GWVE+RG T + S+ + R HL S+ TA+ +PG GR+G KG+GRVFGVPL+ LVL+PERC +G LDPALGVPDAV +L+EALSE C N+PG+FL E+ E+EL +VVKSL+K N +P GG PAWL+S++TGG A GVSPHA+A+AL++FLHRLPEPLLTFRRREAFL+CE
Sbjct: 48 RTLVLQRAATRAKLVKNLRNAAQALAALQAK----QQQEGVAPPQQAGGAMGMVSETGGIPPRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDF-GVIPFWAFLERVERLPLTMGEGGAGRPGPRERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALDTPPRWPILEEEEEWDRLAXXXXXXXXXXXXXXXGTHARTASRSFDETTVAGGAMGRSXXXXTARGPPAEHGSVSWFQEXXXXXXXXXXXXXGRRSDVGGWAASALSEIDQLANGNWNEQLDDVLATVSSKVDKAVQSLDETINDIFGDNDDV-DNDDN---------------------------------------KAKANSSGGTRD--GWVELRGGTAKSASALLHPEEAARDXXXXXXXXXTGDEHLAPSSWRKMTAAGGPRAGAGGYPGAFVMGGRRGGAKGRGRVFGVPLEDLVLNPERCRRGTLDPALGVPDAVLSLIEALSEEGCRNSPGLFLREADETELVKVVKSLDKANTLPGRRGGGRSGDSSSSPAWLVSRLTGGGEGTAEEEKSGGKGALGVSPHAVANALVYFLHRLPEPLLTFRRREAFLACE 661
BLAST of mRNA_H-paniculata_contig450.11325.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI) HSP 1 Score: 462 bits (1190), Expect = 2.000e-141 Identity = 325/691 (47.03%), Postives = 393/691 (56.87%), Query Frame = 3
Query: 60 MSWISSIIPSGAGQERRNNGISRVVARQRAATRAQLVANLRNAAQGLATLQAKVVGEESRXXXXXXXXXQGPSSSISSPS-LSGNAHVPLLGGDTPEAIEVCSALEQCLFHRIRTKDFRGVMPFWAYLERLERLPIATAAGA--RPGPRERRLSSVRNTVGAVASCRRVSTAVGKARSWVRQCLVCKCLEACVGAVLAETRLVQVFYEPTALARCEEGSTILLRLCAALEAFDIAVDADQSALDSAPRWPILE-----------------------------REEEWDRRMDED------QARPATVTAASQQPLYNNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVATATSEIDKLSQGESWAQLDGVISSFSSKVDQAVQSLDGTLSELFGDKDIFGDNNSNGDSKNYNEGGRNLHRSVPASQTPLYTANSSGXXXXXSIGNADRRQAGGVRDDAGWVEIRGDTLNATSS------------------PSLTDARYRHHLHSSAQGHSTASFPGGDAG-------LG--RQGRKGKGRVFGVPLDQLVLDPERCNKGLLDPALGVPDAVANLMEALSEPTCYNTPGIFLEESSESELFRVVKSLEKTNQVPIAAIGG--------PAWLISKITGGAXXXXXXXXXXXXKAGGVSPHALASALLFFLHRLPEPLLTFRRREAFLSCE 1913
MSW+SSII SG Q+ R++G +V ARQRAATRA+LV NLRNAAQ LA LQAK + + G +S + PL+GGDT EA+ +C A+EQCLFHRIR KDF GV+PFWA+LER+ERLP+ G R GPRERRL+SVRNTVGAVAS VST +G+AR+W+RQCLVCKCLE+CV A+L E RLV+VFYEPTALARC EGS ILLRLCAALEAFD+A+D DQSAL++ PRWPILE R DE R A A P + S XXXXXXXXXX W A+A SEID+L+ G QLD V+++ SSKVD+AVQSLD T+ ++FGD XX GG RD GWVE+RG T + S+ HL SS+ TA+ P AG +G R G KG+GRVFGVPL+ LVL+PERC +G LDPALGVPDAV +L+EALSE C N+PG+FL E+ E+EL +VVKSL+K N +P GG PAWL+S++TGG A GVSP A+A+AL++FLHRLPEPLLTFRRREAFL+CE
Sbjct: 1 MSWLSSII-SGP-QDSRDSG-KQVEARQRAATRARLVKNLRNAAQALAALQAK----QQQEGVAPPQQAGGAMGMVSETGGIPRRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDF-GVIPFWAFLERVERLPLTIGGGGAGRQGPRERRLASVRNTVGAVASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALNTPPRWPILEEXXXXXXXXXXXXXXXXXXXXXXXXXSGTRARTAPGSFDETAVAGGAMGRSAAAGTARVPPAEHGSVSWFQEQRXXXXXXXXXXAGRRSDMGG-WAASALSEIDQLANGNWNEQLDDVLATVSSKVDKAVQSLDETIQDIFGDDXXX----------------------------------------XXXXXXXXXXXXGGTRD--GWVELRGGTAKSASALLHPEEAXXXXXXXXXXXXXXXXXXXXEHLASSSGRKMTAAGPRAGAGGYPGAFVMGGRRGGAKGRGRVFGVPLEDLVLNPERCRRGTLDPALGVPDAVLSLIEALSEEGCRNSPGLFLREADETELVKVVKSLDKANTLPGRRGGGSSGSSASSPAWLVSRLTGGGEGTAEEEKSGGRGALGVSPQAVATALVYFLHRLPEPLLTFRRREAFLACE 640
BLAST of mRNA_H-paniculata_contig450.11325.1 vs. uniprot
Match: A0A836CLX4_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX4_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 5.480e-16 Identity = 55/140 (39.29%), Postives = 74/140 (52.86%), Query Frame = 3
Query: 1491 VFGVPLDQLVLDPERCNKGLLDPALGVPDAVANLMEALSEPTCYNTPGIFLEESSESELFRVVKSLEKTNQVPIAAIGGPAWLISKITGGAXXXXXXXXXXXXKAGGVSPHALASALLFFLHRLPEPLLTFRRREAFLSC 1910
VFGV L++L P R +LD A +PDA+A+L+ ALS P + PG+F ++ E+ V K+L N VP+ A G VS HALA+ALL FLHR+P+PLLT++ R AFL C
Sbjct: 302 VFGVDLEELFCSPRRSAGAMLDAAAELPDALASLLAALSHPLVLSEPGLFQVAAAPGEVLTVTKALNAGNAVPVDAGGSSL--------------------------VSAHALAAALLLFLHRMPQPLLTYQSRRAFLVC 415
BLAST of mRNA_H-paniculata_contig450.11325.1 vs. uniprot
Match: A0A7S1C9A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9A5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.110e-8 Identity = 45/141 (31.91%), Postives = 66/141 (46.81%), Query Frame = 3
Query: 1488 RVFGVPLDQLVLDPERCNKGLLDPALGVPDAVANLMEALSEPTCYNTPGIFLEESSESELFRVVKSLEKTNQVPIAAIGGPAWLISKITGGAXXXXXXXXXXXXKAGGVSPHALASALLFFLHRLPEPLLTFRRREAFLSC 1910
RVFGV L L +DPE +LDP L VP+ + +E L NTPG+F S++ + + ++ T+ V + +G A HA+A+ L+ FL LP+PLLT+ R AF+SC
Sbjct: 69 RVFGVALASLAVDPEHSTLAVLDPRLAVPELPSQCIELLEAAA--NTPGLFTTRVSDATVASLREAFSATHTVHMV-VGVAA---------------------------DAHAVAALLMSFLAYLPDPLLTYERHVAFMSC 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig450.11325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig450.11325.1 >prot_H-paniculata_contig450.11325.1 ID=prot_H-paniculata_contig450.11325.1|Name=mRNA_H-paniculata_contig450.11325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=618bp MSWISSIIPSGAGQERRNNGISRVVARQRAATRAQLVANLRNAAQGLATLback to top mRNA from alignment at H-paniculata_contig450:80..18040- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig450.11325.1 ID=mRNA_H-paniculata_contig450.11325.1|Name=mRNA_H-paniculata_contig450.11325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17961bp|location=Sequence derived from alignment at H-paniculata_contig450:80..18040- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig450:80..18040- >mRNA_H-paniculata_contig450.11325.1 ID=mRNA_H-paniculata_contig450.11325.1|Name=mRNA_H-paniculata_contig450.11325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3708bp|location=Sequence derived from alignment at H-paniculata_contig450:80..18040- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |