mRNA_H-paniculata_contig45.11323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45.11323.1
Unique NamemRNA_H-paniculata_contig45.11323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45.11323.1 vs. uniprot
Match: A0A6H5L0S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.380e-17
Identity = 66/138 (47.83%), Postives = 80/138 (57.97%), Query Frame = -2 
Query:  165 MQSEGFDFSIDTLSHINNHTDFGTEAPVTATVAEASSMAANAASGSGSKRTIRHP--RGPESSARGLATSPLAGEQGCDEVFDAQGTAAEEAFFADACATASLKTPVKHVLATGGGGVAGGGAVP--GVAVRRARQQD 566
            + +E FDFSIDTLSHINNHTDFGT+AP+T     A++ AA+   G G+    R P  +G E+S+   A                     EEAFF+DACATASLKTPVKH+LAT         A P  GVAVRR R+ D
Sbjct:  495 INNEAFDFSIDTLSHINNHTDFGTDAPLTPAPRSATA-AASPKIGRGAAGQARLPWVKGGETSSAQDAGXXXXXXXXXXXXXXXXXXXXEEAFFSDACATASLKTPVKHMLAT---------AAPDLGVAVRRGRRPD 622
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BLAST of mRNA_H-paniculata_contig45.11323.1 vs. uniprot
Match: D8LQ68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ68_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.360e-13
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = -2 
Query:  165 MQSEGFDFSIDTLSHINNHTDFGTEAPVTATVAEASSMAANAASGSGSKRTIRHPRGPESSARGLATSPLAGEQGCDEVFDAQGTAA-EEAFFADACATASLKTPVKHVLATGGGGVAGGGAVPGVAVRRARQQD 566
            + +E FDFSIDTLSHINNHTDFGT+AP+T  +  A++ A +   G G+    R P                                 EEAFF+DACATASLKTPVKH+L T    +       GVAVRR R+ D
Sbjct:  520 INNEAFDFSIDTLSHINNHTDFGTDAPLTPALPSAAA-ATSPKVGRGAAGQARLPWVTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAFFSDACATASLKTPVKHMLTTAASDL-------GVAVRRGRRPD 646
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45.11323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0S8_9PHAE9.380e-1747.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ68_ECTSI9.360e-1342.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45contigH-paniculata_contig45:44802..45374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size575
Cds size573
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930350.3280592-CDS-H-paniculata_contig45:44801..453741622930350.3280592-CDS-H-paniculata_contig45:44801..45374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 44802..45374 +
1691481252.8460102-CDS-H-paniculata_contig45:44801..453741691481252.8460102-CDS-H-paniculata_contig45:44801..45374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 44802..45374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45.11323.1prot_H-paniculata_contig45.11323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45 44802..45374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45.11323.1

>prot_H-paniculata_contig45.11323.1 ID=prot_H-paniculata_contig45.11323.1|Name=mRNA_H-paniculata_contig45.11323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MQRSSPSNPCDSRDAVFLFPFLALVAVAARCAVRDVAPSAGAPGRSAGVP
RAPLRSCCLALRTATPGTAPPPATPPPPVASTCFTGVFKLAVAHASAKKA
SSAAVPCASNTSSHPCSPANGLVARPRADDSGPLGWRIVRLLPEPLAAFA
AIDDASATVAVTGASVPKSVWLLMWLRVSMLKSNPSLCIDL
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mRNA from alignment at H-paniculata_contig45:44802..45374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45.11323.1 ID=mRNA_H-paniculata_contig45.11323.1|Name=mRNA_H-paniculata_contig45.11323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig45:44802..45374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAGGTCCTCACCTTCCAACCCTTGCGACTCCCGGGACGCCGTATT
CCTCTTTCCATTCCTAGCGCTTGTAGCAGTCGCCGCCCGTTGTGCTGTTC
GCGACGTGGCTCCATCAGCAGGAGCCCCTGGTCGCTCTGCTGGGGTCCCT
CGGGCGCCTCTTCGATCTTGCTGCCTCGCCCTGCGGACAGCGACCCCCGG
CACTGCGCCGCCGCCGGCAACGCCACCGCCACCCGTGGCAAGCACGTGTT
TCACGGGGGTCTTCAAGCTCGCCGTAGCACACGCATCCGCAAAGAAAGCC
TCCTCTGCAGCCGTGCCCTGCGCATCAAACACTTCGTCGCACCCCTGCTC
TCCTGCTAACGGGCTGGTCGCCAGGCCGCGAGCGGATGACTCTGGCCCCC
TAGGATGGCGGATCGTTCGTTTGCTGCCAGAGCCGCTGGCAGCGTTTGCC
GCCATTGACGATGCTTCCGCGACGGTTGCCGTGACTGGTGCTTCGGTACC
GAAGTCAGTGTGGTTATTAATGTGGCTCAGGGTGTCAATGCTGAAGTCGA
ACCCCTCGCTCTGCATAGATTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig45:44802..45374+

>mRNA_H-paniculata_contig45.11323.1 ID=mRNA_H-paniculata_contig45.11323.1|Name=mRNA_H-paniculata_contig45.11323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig45:44802..45374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAGGTCCTCACCTTCCAACCCTTGCGACTCCCGGGACGCCGTATT
CCTCTTTCCATTCCTAGCGCTTGTAGCAGTCGCCGCCCGTTGTGCTGTTC
GCGACGTGGCTCCATCAGCAGGAGCCCCTGGTCGCTCTGCTGGGGTCCCT
CGGGCGCCTCTTCGATCTTGCTGCCTCGCCCTGCGGACAGCGACCCCCGG
CACTGCGCCGCCGCCGGCAACGCCACCGCCACCCGTGGCAAGCACGTGTT
TCACGGGGGTCTTCAAGCTCGCCGTAGCACACGCATCCGCAAAGAAAGCC
TCCTCTGCAGCCGTGCCCTGCGCATCAAACACTTCGTCGCACCCCTGCTC
TCCTGCTAACGGGCTGGTCGCCAGGCCGCGAGCGGATGACTCTGGCCCCC
TAGGATGGCGGATCGTTCGTTTGCTGCCAGAGCCGCTGGCAGCGTTTGCC
GCCATTGACGATGCTTCCGCGACGGTTGCCGTGACTGGTGCTTCGGTACC
GAAGTCAGTGTGGTTATTAATGTGGCTCAGGGTGTCAATGCTGAAGTCGA
ACCCCTCGCTCTGCATAGATTTGATGCAAAGGTCCTCACCTTCCAACCCT
TGCGACTCCCGGGACGCCGTATTCCTCTTTCCATTCCTAGCGCTTGTAGC
AGTCGCCGCCCGTTGTGCTGTTCGCGACGTGGCTCCATCAGCAGGAGCCC
CTGGTCGCTCTGCTGGGGTCCCTCGGGCGCCTCTTCGATCTTGCTGCCTC
GCCCTGCGGACAGCGACCCCCGGCACTGCGCCGCCGCCGGCAACGCCACC
GCCACCCGTGGCAAGCACGTGTTTCACGGGGGTCTTCAAGCTCGCCGTAG
CACACGCATCCGCAAAGAAAGCCTCCTCTGCAGCCGTGCCCTGCGCATCA
AACACTTCGTCGCACCCCTGCTCTCCTGCTAACGGGCTGGTCGCCAGGCC
GCGAGCGGATGACTCTGGCCCCCTAGGATGGCGGATCGTTCGTTTGCTGC
CAGAGCCGCTGGCAGCGTTTGCCGCCATTGACGATGCTTCCGCGACGGTT
GCCGTGACTGGTGCTTCGGTACCGAAGTCAGTGTGGTTATTAATGTGGCT
CAGGGTGTCAATGCTGAAGTCGAACCCCTCGCTCTGCATAGATTTG
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