mRNA_H-paniculata_contig44966.11315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44966.11315.1
Unique NamemRNA_H-paniculata_contig44966.11315.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 88.2 bits (217), Expect = 7.580e-20
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    4 PRNHQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDF 342
            P   +EA  SP+ E W+ A E E++ L  N  W  V RP+ + VV    ++KRK+++DG+VE+YK RLVA G  Q++GI Y+E  SP     S + +L+ +  QDW++  + +
Sbjct:   31 PETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQLGY 143          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-18
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   13 HQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            ++EA A PE EDW+ A E E+  +   G +  VE+PK   VV  + + ++K DE+ +V K+K RL A G  Q+ G+ Y + ++P+   AS ++VL+LAA  DWE+  +DF+ A
Sbjct:  223 YREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNA 335          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-18
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   49 WQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            W+ A + E + L   G W  V  P+N+ V+ +  +YK K D+DGKV +YK RLVA G  Q  G+ Y E  SP     + ++VLSLAA   W+LR +D + A
Sbjct:   65 WRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNA 165          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 89.0 bits (219), Expect = 3.200e-18
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   19 EAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            EA+  P+W  WQ A   E+  L   G WT V RP  + VV    + + K +  G++EKYK RLVA G  Q++G+ Y E  +P+   AS ++VL++AA  DW++   DF  A
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSA 1177          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 88.6 bits (218), Expect = 4.260e-18
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 EPRNHQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            EP+ ++EA AS E E W+RA E E   LI N  WT+ + P  +  ++  +I+K+K D DGKV +YK RLV  G  Q  GI Y E  +P     S + + SLAA +D+E+   D + A
Sbjct:  564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTA 680          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 87.8 bits (216), Expect = 8.090e-18
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 EPRNHQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            EPR+  EAQASPEW +W++A + E   L   G W   + PK++  V    +++RK +++G+V KYK RLVA G  QI G+ + E  +P     S + +L+LA   +WE+  +D + A
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGA 1022          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-17
Identity = 44/113 (38.94%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   13 HQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            ++EA A PE +DW+ A + E+  +   G +  VE PK+  +V ++ + K+K DE   V K+K RL A G  Q+ GI Y E ++P+ + +S ++VL+LAA  DWE+  +DF+ A
Sbjct:  719 YREAMAGPECDDWKIAMQEELAKIEAMGTYELVEPPKDVNIVGSVWVLKKKRDEHNNVAKFKARLCAQGFSQVYGIDYVETAAPTASLSSLRLVLALAAANDWEIHQIDFKNA 831          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA)

HSP 1 Score: 85.5 bits (210), Expect = 1.200e-17
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   43 EDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            EDW+ A + E   L   G W  V  P ++ V+ +  +YK K D+DGKV +YK RLVAHG  Q +G+ Y E  S      + ++VLSLAA + WELR +D + A
Sbjct:  149 EDWRNAMKEEFVSLQKQGTWELVPPPVDRNVIGSKWVYKIKKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWELRQLDVKNA 251          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 86.7 bits (213), Expect = 2.000e-17
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 EPRNHQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            EP N  EA  SP W     A + EM+ +  NG WT V RP N+  V    +YK K D  G + KYK RLVA G  Q +G+ Y E  +P     + +++L+LAA +DW++ H+D + A
Sbjct:  669 EPANFVEASKSPSWT---HAMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSA 782          
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 85.1 bits (209), Expect = 6.460e-17
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    4 PRNHQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLSLAAFQDWELRHVDFEQA 351
            P NH +A   P   +W  A   E   LI  G W  V RPKN  ++ +M +YK K D +G++ +YK RLVA+GN Q+ G+   E  SP    A+ + VL +A   DW LR +D + A
Sbjct:  408 PLNHIQAARDP---NWNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYDWPLRQLDVKNA 520          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44966.11315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015A81C6A7.580e-2038.94uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A8H7NVE6_9APHY1.200e-1839.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540NMU0_MALBA1.420e-1841.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H565_MYCCL3.200e-1839.64Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A0J7K690_LASNI4.260e-1841.03Retrovirus-related pol polyprotein from transposon... [more]
A0A401GYH9_9APHY8.090e-1838.46Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A8H7TXH5_9APHY1.100e-1738.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A540MBJ7_MALBA1.200e-1742.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8I6XHP4_HORVV2.000e-1740.17Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
UPI00090104FD6.460e-1739.66uncharacterized protein LOC104779870 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44966contigH-paniculata_contig44966:2..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue3.3e-16
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.9812262-CDS-H-paniculata_contig44966:1..3521622930349.9812262-CDS-H-paniculata_contig44966:1..352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44966 2..352 -
1691481252.7182674-CDS-H-paniculata_contig44966:1..3521691481252.7182674-CDS-H-paniculata_contig44966:1..352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44966 2..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44966.11315.1prot_H-paniculata_contig44966.11315.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44966 2..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44966.11315.1

>prot_H-paniculata_contig44966.11315.1 ID=prot_H-paniculata_contig44966.11315.1|Name=mRNA_H-paniculata_contig44966.11315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
EPRNHQEAQASPEWEDWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMM
IYKRKIDEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPSPTAASTKMVLS
LAAFQDWELRHVDFEQA
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mRNA from alignment at H-paniculata_contig44966:2..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44966.11315.1 ID=mRNA_H-paniculata_contig44966.11315.1|Name=mRNA_H-paniculata_contig44966.11315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig44966:2..352- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCCAGGAATCACCAGGAGGCGCAGGCGTCGCCGGAGTGGGAAGACTG GCAAAGAGCGGAGGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGCTT GGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCACGATGATG ATCTACAAAAGAAAAATCGACGAGGACGGAAAAGTGGAGAAATATAAGTG CCGCCTGGTCGCCCATGGAAACCGTCAGATCAAGGGCATCCACTACCAGG AAGCTTCGTCCCCTTCACCCACAGCGGCCAGCACAAAAATGGTGTTGTCG CTCGCGGCATTCCAGGACTGGGAGCTACGGCACGTCGACTTTGAACAAGC G
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Coding sequence (CDS) from alignment at H-paniculata_contig44966:2..352-

>mRNA_H-paniculata_contig44966.11315.1 ID=mRNA_H-paniculata_contig44966.11315.1|Name=mRNA_H-paniculata_contig44966.11315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig44966:2..352- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCCAGGAATCACCAGGAGGCGCAGGCGTCGCCGGAGTGGGAAGACTG
GCAAAGAGCGGAGGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGCTT
GGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCACGATGATG
ATCTACAAAAGAAAAATCGACGAGGACGGAAAAGTGGAGAAATATAAGTG
CCGCCTGGTCGCCCATGGAAACCGTCAGATCAAGGGCATCCACTACCAGG
AAGCTTCGTCCCCTTCACCCACAGCGGCCAGCACAAAAATGGTGTTGTCG
CTCGCGGCATTCCAGGACTGGGAGCTACGGCACGTCGACTTTGAACAAGC
GGAACCCAGGAATCACCAGGAGGCGCAGGCGTCGCCGGAGTGGGAAGACT
GGCAAAGAGCGGAGGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGCT
TGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCACGATGAT
GATCTACAAAAGAAAAATCGACGAGGACGGAAAAGTGGAGAAATATAAGT
GCCGCCTGGTCGCCCATGGAAACCGTCAGATCAAGGGCATCCACTACCAG
GAAGCTTCGTCCCCTTCACCCACAGCGGCCAGCACAAAAATGGTGTTGTC
GCTCGCGGCATTCCAGGACTGGGAGCTACGGCACGTCGACTTTGAACAAG
CG
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