mRNA_H-paniculata_contig44914.11307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44914.11307.1
Unique NamemRNA_H-paniculata_contig44914.11307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44914.11307.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-7
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    4 WTALGKKYLNSSMQGRRLLMRQLDSKVMAPNQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLTDDYDQIKFAAERDLDFSL 264
            W  L  K+  +    RR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIIL+GL  +Y  I  A+   LD  L
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGASGHYLDSEL 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44914.11307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE4.180e-736.78Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44914contigH-paniculata_contig44914:326..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.3729737-CDS-H-paniculata_contig44914:325..8111622930349.3729737-CDS-H-paniculata_contig44914:325..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44914 326..811 -
1691481252.5005808-CDS-H-paniculata_contig44914:325..8111691481252.5005808-CDS-H-paniculata_contig44914:325..811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44914 326..811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44914.11307.1prot_H-paniculata_contig44914.11307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44914 326..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44914.11307.1

>prot_H-paniculata_contig44914.11307.1 ID=prot_H-paniculata_contig44914.11307.1|Name=mRNA_H-paniculata_contig44914.11307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
AWTALGKKYLNSSMQGRRLLMRQLDSKVMAPNQDPDEYLTEIFHLRDELE
YIGETFSEGRITDIILEGLTDDYDQIKFAAERDLDFSLKDMEATMRNRYA
NRIARGQISSSRRKGRESAMMALSSAFKDICNYCHKPGHIKSECRELKRR
QRSAAPSSANTA
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mRNA from alignment at H-paniculata_contig44914:326..811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44914.11307.1 ID=mRNA_H-paniculata_contig44914.11307.1|Name=mRNA_H-paniculata_contig44914.11307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig44914:326..811- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGACAGCATTAGGCAAGAAATATCTGAACTCGTCCATGCAGGGCCG
CCGTCTACTTATGCGCCAGCTAGACAGCAAGGTCATGGCGCCTAATCAAG
ACCCTGATGAGTACCTGACCGAGATATTCCATCTGCGCGACGAGCTCGAG
TACATCGGGGAAACTTTCTCGGAAGGGCGCATCACGGATATCATTCTTGA
AGGGCTCACAGACGATTACGACCAGATCAAATTTGCCGCCGAGAGGGACC
TCGATTTTTCCCTGAAAGACATGGAAGCCACGATGAGAAATAGGTACGCC
AACCGCATTGCGCGTGGTCAAATCTCATCCTCACGCAGGAAGGGTCGTGA
GTCAGCTATGATGGCCTTGTCGTCGGCTTTCAAAGACATCTGTAATTACT
GCCACAAACCTGGACATATCAAGAGCGAGTGTAGAGAGCTGAAGCGGCGG
CAAAGGTCTGCAGCACCTTCGTCCGCTAACACTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig44914:326..811-

>mRNA_H-paniculata_contig44914.11307.1 ID=mRNA_H-paniculata_contig44914.11307.1|Name=mRNA_H-paniculata_contig44914.11307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig44914:326..811- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGACAGCATTAGGCAAGAAATATCTGAACTCGTCCATGCAGGGCCG
CCGTCTACTTATGCGCCAGCTAGACAGCAAGGTCATGGCGCCTAATCAAG
ACCCTGATGAGTACCTGACCGAGATATTCCATCTGCGCGACGAGCTCGAG
TACATCGGGGAAACTTTCTCGGAAGGGCGCATCACGGATATCATTCTTGA
AGGGCTCACAGACGATTACGACCAGATCAAATTTGCCGCCGAGAGGGACC
TCGATTTTTCCCTGAAAGACATGGAAGCCACGATGAGAAATAGGTACGCC
AACCGCATTGCGCGTGGTCAAATCTCATCCTCACGCAGGAAGGGTCGTGA
GTCAGCTATGATGGCCTTGTCGTCGGCTTTCAAAGACATCTGTAATTACT
GCCACAAACCTGGACATATCAAGAGCGAGTGTAGAGAGCTGAAGCGGCGG
CAAAGGTCTGCAGCACCTTCGTCCGCTAACACTGCAGCCTGGACAGCATT
AGGCAAGAAATATCTGAACTCGTCCATGCAGGGCCGCCGTCTACTTATGC
GCCAGCTAGACAGCAAGGTCATGGCGCCTAATCAAGACCCTGATGAGTAC
CTGACCGAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGGGGAAAC
TTTCTCGGAAGGGCGCATCACGGATATCATTCTTGAAGGGCTCACAGACG
ATTACGACCAGATCAAATTTGCCGCCGAGAGGGACCTCGATTTTTCCCTG
AAAGACATGGAAGCCACGATGAGAAATAGGTACGCCAACCGCATTGCGCG
TGGTCAAATCTCATCCTCACGCAGGAAGGGTCGTGAGTCAGCTATGATGG
CCTTGTCGTCGGCTTTCAAAGACATCTGTAATTACTGCCACAAACCTGGA
CATATCAAGAGCGAGTGTAGAGAGCTGAAGCGGCGGCAAAGGTCTGCAGC
ACCTTCGTCCGCTAACACTGCA
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