prot_H-paniculata_contig44914.11307.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44914.11307.1
Unique Nameprot_H-paniculata_contig44914.11307.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length162
Homology
[Close]
BLAST of mRNA_H-paniculata_contig44914.11307.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-7
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0 
Query:    2 WTALGKKYLNSSMQGRRLLMRQLDSKVMAPNQDPDEYLTEIFHLRDELEYIGETFSEGRITDIILEGLTDDYDQIKFAAERDLDFSL 88
            W  L  K+  +    RR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIIL+GL  +Y  I  A+   LD  L
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGASGHYLDSEL 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44914.11307.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE4.180e-736.78Integrase catalytic domain-containing protein n=1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 104..159
e-value: 7.2E-7
score: 31.0
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..99
e-value: 6.8E-11
score: 42.0
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 2..153
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 131..146
score: 8.532
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 128..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44914contigH-paniculata_contig44914:326..811 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44914.11307.1mRNA_H-paniculata_contig44914.11307.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44914 326..811 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44914.11307.1 ID=prot_H-paniculata_contig44914.11307.1|Name=mRNA_H-paniculata_contig44914.11307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
AWTALGKKYLNSSMQGRRLLMRQLDSKVMAPNQDPDEYLTEIFHLRDELE
YIGETFSEGRITDIILEGLTDDYDQIKFAAERDLDFSLKDMEATMRNRYA
NRIARGQISSSRRKGRESAMMALSSAFKDICNYCHKPGHIKSECRELKRR
QRSAAPSSANTA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf