mRNA_H-paniculata_contig44902.11305.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44902.11305.1
Unique NamemRNA_H-paniculata_contig44902.11305.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig44902.11305.1 vs. uniprot
Match: D8LJK6_ECTSI (CID domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.010e-7
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 VPEGDKGPVFRVIREWHEKGIFQGLEAFASGG 99
            VP+GDK PVFRVIREWHEKG+F+GLEAFAS G
Sbjct:  106 VPDGDKPPVFRVIREWHEKGMFKGLEAFASTG 137
[Close]
BLAST of mRNA_H-paniculata_contig44902.11305.1 vs. uniprot
Match: A0A6H5JF85_9PHAE (CID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF85_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.770e-7
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 VPEGDKGPVFRVIREWHEKGIFQGLEAFASGG 99
            VP+GDK PVFRVIREWHEKG+F+GLEAFAS G
Sbjct:  106 VPDGDKPPVFRVIREWHEKGMFKGLEAFASTG 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44902.11305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJK6_ECTSI2.010e-784.38CID domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5JF85_9PHAE6.770e-784.38CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44902contigH-paniculata_contig44902:418..1510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog2880.D8LJK6
Preferred nameSCAF8
KEGG koko:K05747,ko:K13167,ko:K13191,ko:K15560,ko:K16847
KEGG Pathwayko04062,ko04144,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016363,GO:0018130,GO:0019438,GO:0019899,GO:0019904,GO:0031974,GO:0031981,GO:0032774,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070063,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.RNA binding
EggNOG OGsKOG0132@1,KOG0132@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03041,ko04131,ko04812
Exons2
Model size1064
Cds size1062
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.0998585-CDS-H-paniculata_contig44902:417..10371622930349.0998585-CDS-H-paniculata_contig44902:417..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44902 418..1037 +
1691481252.4180238-CDS-H-paniculata_contig44902:417..10371691481252.4180238-CDS-H-paniculata_contig44902:417..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44902 418..1037 +
1622930349.1165955-CDS-H-paniculata_contig44902:1067..15091622930349.1165955-CDS-H-paniculata_contig44902:1067..1509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44902 1068..1509 +
1691481252.4309492-CDS-H-paniculata_contig44902:1067..15091691481252.4309492-CDS-H-paniculata_contig44902:1067..1509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44902 1068..1509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44902.11305.1prot_H-paniculata_contig44902.11305.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44902 418..1509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44902.11305.1

>prot_H-paniculata_contig44902.11305.1 ID=prot_H-paniculata_contig44902.11305.1|Name=mRNA_H-paniculata_contig44902.11305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=354bp
QVPEGDKGPVFRVIREWHEKGIFQGLEAFASGGGGAGTTGTTSNTHAPIS
STTLPLPDHLNSHRTDGPYGGAYPNGDGAAGSIQPYAPTYGGGGGSWGAV
TLGEGLDEPLSDSRFVPKEPPLPPEGDSVGPGEGDDAAGEDGGVEVSQQQ
EKEQEQYPPPPPPPGPPPSAQTAIDVAVNGGSVLERHRLFLQQQEQLQQQ
QQQQQQQQMQQQQQQQQQQQQQQQQDSNNLDQPPPPPPPPGTAAPQDEDQ
DNNVDMDEGEEEEPPPPPPPPPENGNGDGNNGDGGGSGKIMELWSLLHEA
NTSSAAAPATSTDASSSVNVDLATAVAPPPPPIPTSSPPTVEGSSVGAEG
HAAP
back to top

mRNA from alignment at H-paniculata_contig44902:418..1510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44902.11305.1 ID=mRNA_H-paniculata_contig44902.11305.1|Name=mRNA_H-paniculata_contig44902.11305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-paniculata_contig44902:418..1510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTACCAGAGGGAGACAAGGGTCCCGTATTCCGCGTAATCCGGGAGTG
GCACGAGAAAGGCATTTTCCAGGGGCTCGAGGCTTTTGCGAGTGGGGGCG
GTGGCGCCGGCACCACTGGCACCACCAGCAATACTCACGCGCCGATCTCT
AGCACCACTCTTCCCCTCCCCGACCACCTAAATTCACATCGCACAGATGG
GCCTTACGGCGGGGCTTATCCGAACGGAGATGGCGCAGCGGGATCGATAC
AACCCTACGCCCCTACCTACGGTGGCGGCGGCGGAAGCTGGGGTGCTGTT
ACGCTAGGTGAAGGGCTGGATGAACCCTTATCGGACTCGAGGTTTGTACC
GAAAGAACCCCCGTTGCCGCCCGAGGGCGACTCGGTGGGACCCGGGGAGG
GCGACGACGCGGCGGGAGAAGATGGAGGTGTGGAGGTGAGTCAGCAGCAG
GAGAAGGAGCAAGAGCAGTATCCGCCCCCGCCCCCGCCGCCTGGGCCGCC
CCCGTCTGCGCAGACGGCGATAGATGTGGCGGTGAACGGGGGCTCGGTGT
TAGAGCGGCATAGGCTGTTCCTTCAGCAGCAAGAACAGTTGCAGCAGCAG
CAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAAAAAG
GCAAATGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAACAGC
AACAGGACTCGAATAATTTAGATCAGCCGCCCCCGCCTCCGCCCCCGCCG
GGAACGGCGGCCCCGCAAGACGAAGACCAGGACAACAATGTCGACATGGA
CGAGGGCGAGGAGGAGGAGCCACCGCCGCCTCCGCCACCGCCGCCCGAGA
ACGGAAATGGGGACGGGAACAACGGCGACGGCGGTGGCAGCGGGAAGATC
ATGGAGCTGTGGAGTTTGTTGCACGAGGCCAACACGTCGAGCGCCGCCGC
GCCGGCGACCTCCACGGACGCGAGCAGCAGTGTGAACGTTGACCTCGCGA
CTGCTGTGGCGCCACCGCCACCGCCGATTCCTACTTCTTCGCCGCCTACG
GTAGAAGGCTCTTCGGTCGGAGCTGAAGGTCATGCTGCCCCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig44902:418..1510+

>mRNA_H-paniculata_contig44902.11305.1 ID=mRNA_H-paniculata_contig44902.11305.1|Name=mRNA_H-paniculata_contig44902.11305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2124bp|location=Sequence derived from alignment at H-paniculata_contig44902:418..1510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTACCAGAGGGAGACAAGGGTCCCGTATTCCGCGTAATCCGGGAGTG
GCACGAGAAAGGCATTTTCCAGGGGCTCGAGGCTTTTGCGAGTGGGGGCG
GTGGCGCCGGCACCACTGGCACCACCAGCAATACTCACGCGCCGATCTCT
AGCACCACTCTTCCCCTCCCCGACCACCTAAATTCACATCGCACAGATGG
GCCTTACGGCGGGGCTTATCCGAACGGAGATGGCGCAGCGGGATCGATAC
AACCCTACGCCCCTACCTACGGTGGCGGCGGCGGAAGCTGGGGTGCTGTT
ACGCTAGGTGAAGGGCTGGATGAACCCTTATCGGACTCGAGGTTTGTACC
GAAAGAACCCCCGTTGCCGCCCGAGGGCGACTCGGTGGGACCCGGGGAGG
GCGACGACGCGGCGGGAGAAGATGGAGGTGTGGAGGTGAGTCAGCAGCAG
GAGAAGGAGCAAGAGCAGTATCCGCCCCCGCCCCCGCCGCCTGGGCCGCC
CCCGTCTGCGCAGACGGCGATAGATGTGGCGGTGAACGGGGGCTCGGTGT
TAGAGCGGCATAGGCTGTTCCTTCAGCAGCAAGAACAGTTGCAGCAGCAG
CAGCAGCAGCAACAGCAGCACAGGTACCAGAGGGAGACAAGGGTCCCGTA
TTCCGCGTAATCCGGGAGTGGCACGAGAAAGGCATTTTCCAGGGGCTCGA
GGCTTTTGCGAGTGGGGGCGGTGGCGCCGGCACCACTGGCACCACCAGCA
ATACTCACGCGCCGATCTCTAGCACCACTCTTCCCCTCCCCGACCACCTA
AATTCACATCGCACAGATGGGCCTTACGGCGGGGCTTATCCGAACGGAGA
TGGCGCAGCGGGATCGATACAACCCTACGCCCCTACCTACGGTGGCGGCG
GCGGAAGCTGGGGTGCTGTTACGCTAGGTGAAGGGCTGGATGAACCCTTA
TCGGACTCGAGGTTTGTACCGAAAGAACCCCCGTTGCCGCCCGAGGGCGA
CTCGGTGGGACCCGGGGAGGGCGACGACGCGGCGGGAGAAGATGGAGGTG
TGGAGGTGAGTCAGCAGCAGGAGAAGGAGCAAGAGCAGTATCCGCCCCCG
CCCCCGCCGCCTGGGCCGCCCCCGTCTGCGCAGACGGCGATAGATGTGGC
GGTGAACGGGGGCTCGGTGTTAGAGCGGCATAGGCTGTTCCTTCAGCAGC
AAGAACAGTTGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAATGCAG
CAGCAGCAGCAGCAACAACAACAGCAACAACAGCAACAGCAACAGGACTC
GAATAATTTAGATCAGCCGCCCCCGCCTCCGCCCCCGCCGGGAACGGCGG
CCCCGCAAGACGAAGACCAGGACAACAATGTCGACATGGACGAGGGCGAG
GAGGAGGAGCCACCGCCGCCTCCGCCACCGCCGCCCGAGAACGGAAATGG
GGACGGGAACAACGGCGACGGCGGTGGCAGCGGGAAGATCATGGAGCTGT
GGAGTTTGTTGCACGAGGCCAACACGTCGAGCGCCGCCGCGCCGGCGACC
TCCACGGACGCGAGCAGCAGTGTGAACGTTGACCTCGCGACTGCTGTGGC
GCCACCGCCACCGCCGATTCCTACTTCTTCGCCGCCTACGGTAGAAGGCT
CTTCGGTCGGAGCTGAAGGTCATGCTGCCCCCGCAAATGCAGCAGCAGCA
GCAGCAACAACAACAGCAACAACAGCAACAGCAACAGGACTCGAATAATT
TAGATCAGCCGCCCCCGCCTCCGCCCCCGCCGGGAACGGCGGCCCCGCAA
GACGAAGACCAGGACAACAATGTCGACATGGACGAGGGCGAGGAGGAGGA
GCCACCGCCGCCTCCGCCACCGCCGCCCGAGAACGGAAATGGGGACGGGA
ACAACGGCGACGGCGGTGGCAGCGGGAAGATCATGGAGCTGTGGAGTTTG
TTGCACGAGGCCAACACGTCGAGCGCCGCCGCGCCGGCGACCTCCACGGA
CGCGAGCAGCAGTGTGAACGTTGACCTCGCGACTGCTGTGGCGCCACCGC
CACCGCCGATTCCTACTTCTTCGCCGCCTACGGTAGAAGGCTCTTCGGTC
GGAGCTGAAGGTCATGCTGCCCCC
back to top