mRNA_H-paniculata_contig4484.11299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4484.11299.1 vs. uniprot
Match: D7G691_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G691_ECTSI) HSP 1 Score: 335 bits (859), Expect = 6.830e-109 Identity = 179/302 (59.27%), Postives = 224/302 (74.17%), Query Frame = 1
Query: 1 AQVGGMLACDPFEEISLSSQSYLATVCPRTALDGAAASEQTSVVPARTAFRVVKVTDPRLKDTVTQMQLYRDRQTSLPDGDGEPVRLGEEFHLVCDPGLRVCDAGNMRKPDLFLVSAPKSQSLASRVSNNQAVFLRASASSGSVWFFQKTTHGKDGSLNRILAKGSPVLVDTEIVLQHRDTMMALSCERENIEPTNFGTEFEVCCGNKTTRGKTLQLVAEQKGSKTAAAAAKAELRSNRWIVRQGTERKE-----GERSYQDRKIPPEMTAGNVLQEASTKQLLLFG----FKCIRYALQCI 879
A+VGG+LACDPFEEISL SQ+YLATVCP S PAR AF+VV V DPRLKD TQ+Q++++ + LPD +G+PV G+ FHLV DPGLRVC++ NMR+P L+L S K+Q+L+S+VSN QAVFLRA ASSG+VW FQK THGKDG ++RIL GSPV VDTE+VLQHRDT+MALSCER NIEPT+FG EFEVCC N+TT GK LQL++E +G TAAAAAKAELR+NRW+VR G G +R++PPEMTA N+L++A QL++ G +C+R AL+ +
Sbjct: 83 AEVGGILACDPFEEISLGSQTYLATVCP---------CPPQSPSPARMAFKVVAVNDPRLKDMATQVQMHKEMRDKLPDVEGQPVGYGDLFHLVGDPGLRVCESVNMRRPPLYLTSDLKTQNLSSKVSNKQAVFLRAGASSGTVWQFQKATHGKDGRVDRILGVGSPVCVDTEVVLQHRDTLMALSCERANIEPTDFGAEFEVCCDNRTTNGKCLQLLSETQGRTTAAAAAKAELRANRWMVRLGARDTANAGGGGSEEAGERRLPPEMTAENLLKKA---QLVIHGRVAGIQCLRNALRSV 372 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4484.11299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4484.11299.1 >prot_H-paniculata_contig4484.11299.1 ID=prot_H-paniculata_contig4484.11299.1|Name=mRNA_H-paniculata_contig4484.11299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp MLACDPFEEISLSSQSYLATVCPRTALDGAAASEQTSVVPARTAFRVVKVback to top mRNA from alignment at H-paniculata_contig4484:7472..15274- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4484.11299.1 ID=mRNA_H-paniculata_contig4484.11299.1|Name=mRNA_H-paniculata_contig4484.11299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7803bp|location=Sequence derived from alignment at H-paniculata_contig4484:7472..15274- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4484:7472..15274- >mRNA_H-paniculata_contig4484.11299.1 ID=mRNA_H-paniculata_contig4484.11299.1|Name=mRNA_H-paniculata_contig4484.11299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig4484:7472..15274- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |