mRNA_H-paniculata_contig4482.11294.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4482.11294.1
Unique NamemRNA_H-paniculata_contig4482.11294.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: D7G3V4_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.470e-16
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   31 HNVHEVATLLKMFFRELPDPVVPTSHYHSMLDASSRSLQEFVDTAKRCVAEFPPVNAT 204
            H+VHEVATLLKM+FRELP+PVVPT+ Y+ ML+AS + L EFV+T +  VA+ P +N T
Sbjct:  236 HDVHEVATLLKMYFRELPEPVVPTAFYYPMLEASVKDLTEFVETVRVLVAQLPEINRT 293          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A6H5JGP2_9PHAE (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.550e-15
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   22 QQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDASSRSLQEFVDTAKRCVAEFPPVNAT 204
            ++ H+VHEVATLLKM+FRELP+PVVPT+ YH ML+AS   L EFV+T +  VA+ P +N T
Sbjct:  294 ERIHDVHEVATLLKMYFRELPEPVVPTAFYHPMLEASD--LPEFVETVRVLVAQLPEINRT 352          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A6F8ZLP7_9TELE (Rho-GAP domain-containing protein n=9 Tax=Salmonidae TaxID=8015 RepID=A0A6F8ZLP7_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 5.330e-7
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 CSLSPCTQQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDAS---SRSLQEFVDTAKRCVAEFPPVN 198
            C   P    + +VH VA+LLK++FRELP+PVVP S Y   L  +   ++ ++E V    + V+  PP N
Sbjct:  139 CGDKPLFDSNTDVHTVASLLKLYFRELPEPVVPFSMYEDFLSCAQLLAKDVEEGVQELGKQVSNLPPAN 207          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A158PMR8_ANISI (Rho-GAP domain-containing protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A158PMR8_ANISI)

HSP 1 Score: 54.3 bits (129), Expect = 7.320e-7
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   40 HEVATLLKMFFRELPDPVVPTSHYHSMLDASSRSLQEFVDTAKRCVAEFPPVN 198
            H+VATLLK +FR+LP+P++   HYH+ + A+  S++E ++  K  +A  P  N
Sbjct:  449 HDVATLLKEYFRDLPEPLLSKDHYHAYITAAKTSVEERIECIKMLIALLPQPN 501          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A8C7ZFL8_9TELE (Rho GTPase activating protein 15 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7ZFL8_9TELE)

HSP 1 Score: 53.1 bits (126), Expect = 1.810e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   22 QQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDASS-RSLQEFVDTAKRCVAEFPPVN 198
            QQ  ++H V   LK+FFRELP+P+ P S +H  ++A   +  QE VD  ++ V + PP N
Sbjct:  233 QQWEDIHVVTGALKLFFRELPEPLFPFSFFHPFVEAIKIKDHQEKVDAVRKLVQQLPPPN 292          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: H2LXL4_ORYLA (Rho GTPase-activating protein 15 n=4 Tax=Oryzias TaxID=8089 RepID=H2LXL4_ORYLA)

HSP 1 Score: 53.1 bits (126), Expect = 1.840e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   22 QQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDASS-RSLQEFVDTAKRCVAEFPPVN 198
            QQ  ++H V   LK+FFRELP+P+ P S +H  ++A   +  QE VD  ++ V + PP N
Sbjct:  330 QQWEDIHVVTGALKLFFRELPEPLFPFSFFHPFVEAIKIKDHQEKVDAVRKLVQQLPPPN 389          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: UPI001877BAA9 (rho GTPase-activating protein 22 isoform X2 n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=UPI001877BAA9)

HSP 1 Score: 52.8 bits (125), Expect = 2.550e-6
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    1 CSLSPCTQQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDAS---SRSLQEFVDTAKRCVAEFPPVN 198
            C   P    + +VH VA+LLK++ RELP+PVVP S Y   L  +   ++ ++E V    + V+  PP N
Sbjct:  125 CGDKPLFDSNTDVHTVASLLKLYLRELPEPVVPFSKYEDFLSCAQLLAKDVEEGVQELVKQVSNLPPAN 193          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A8C5QPF6_9ANUR (Rho GTPase activating protein 22 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QPF6_9ANUR)

HSP 1 Score: 52.8 bits (125), Expect = 2.550e-6
Identity = 28/69 (40.58%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    1 CSLSPCTQQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDAS---SRSLQEFVDTAKRCVAEFPPVN 198
            C   P    S +VH VA+LLK++ RELP+PVVP S Y   +  +   SR  +E  +   R V   PP N
Sbjct:  210 CGGKPQFDVSTDVHTVASLLKLYLRELPEPVVPFSRYQEFVACAHILSRDSEEGTEELSRMVNSLPPAN 278          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A1S3NFF0_SALSA (rho GTPase-activating protein 22-like isoform X2 n=10 Tax=Salmoninae TaxID=504568 RepID=A0A1S3NFF0_SALSA)

HSP 1 Score: 52.8 bits (125), Expect = 2.560e-6
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    1 CSLSPCTQQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDAS---SRSLQEFVDTAKRCVAEFPPVN 198
            C   P    + +VH VA+LLK++ RELP+PVVP S Y   L  +   ++ ++E V    + V+  PP N
Sbjct:  158 CGDKPLFDSNTDVHTVASLLKLYLRELPEPVVPFSKYEDFLSCAQLLAKDVEEGVQELGKQVSNLPPAN 226          
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Match: A0A835YT43_9STRA (Rho GTPase activation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT43_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.480e-6
Identity = 20/35 (57.14%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   31 HNVHEVATLLKMFFRELPDPVVPTSHYHSMLDASS 135
            H+VH++A LLKMFFRELP+P++P + Y + LDA++
Sbjct:  451 HSVHDIAALLKMFFRELPEPLIPAASYRAALDAAA 485          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4482.11294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3V4_ECTSI3.470e-1662.07Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JGP2_9PHAE2.550e-1560.66Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6F8ZLP7_9TELE5.330e-739.13Rho-GAP domain-containing protein n=9 Tax=Salmonid... [more]
A0A158PMR8_ANISI7.320e-741.51Rho-GAP domain-containing protein n=1 Tax=Anisakis... [more]
A0A8C7ZFL8_9TELE1.810e-641.67Rho GTPase activating protein 15 n=1 Tax=Oryzias s... [more]
H2LXL4_ORYLA1.840e-641.67Rho GTPase-activating protein 15 n=4 Tax=Oryzias T... [more]
UPI001877BAA92.550e-637.68rho GTPase-activating protein 22 isoform X2 n=1 Ta... [more]
A0A8C5QPF6_9ANUR2.550e-640.58Rho GTPase activating protein 22 n=1 Tax=Leptobrac... [more]
A0A1S3NFF0_SALSA2.560e-637.68rho GTPase-activating protein 22-like isoform X2 n... [more]
A0A835YT43_9STRA3.480e-657.14Rho GTPase activation protein n=1 Tax=Tribonema mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4482contigH-paniculata_contig4482:505..711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog2880.D7G3V4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930347.3556044-CDS-H-paniculata_contig4482:504..7111622930347.3556044-CDS-H-paniculata_contig4482:504..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4482 505..711 -
1691481251.6188688-CDS-H-paniculata_contig4482:504..7111691481251.6188688-CDS-H-paniculata_contig4482:504..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4482 505..711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4482.11294.1prot_H-paniculata_contig4482.11294.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4482 505..711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4482.11294.1

>prot_H-paniculata_contig4482.11294.1 ID=prot_H-paniculata_contig4482.11294.1|Name=mRNA_H-paniculata_contig4482.11294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
CSLSPCTQQSHNVHEVATLLKMFFRELPDPVVPTSHYHSMLDASSRSLQE
FVDTAKRCVAEFPPVNAT*
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mRNA from alignment at H-paniculata_contig4482:505..711-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4482.11294.1 ID=mRNA_H-paniculata_contig4482.11294.1|Name=mRNA_H-paniculata_contig4482.11294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig4482:505..711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTCTCTTTCTCCCTGTACACAGCAGTCACATAATGTGCACGAAGTGGC TACCCTGCTCAAGATGTTCTTCCGTGAGCTGCCGGATCCAGTGGTGCCCA CAAGTCACTACCACAGCATGCTGGACGCTAGCTCAAGGAGTCTGCAAGAA TTCGTAGATACCGCGAAGCGCTGCGTCGCCGAGTTCCCACCAGTAAACGC CACGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4482:505..711-

>mRNA_H-paniculata_contig4482.11294.1 ID=mRNA_H-paniculata_contig4482.11294.1|Name=mRNA_H-paniculata_contig4482.11294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig4482:505..711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTCTCTTTCTCCCTGTACACAGCAGTCACATAATGTGCACGAAGTGGC
TACCCTGCTCAAGATGTTCTTCCGTGAGCTGCCGGATCCAGTGGTGCCCA
CAAGTCACTACCACAGCATGCTGGACGCTAGCTCAAGGAGTCTGCAAGAA
TTCGTAGATACCGCGAAGCGCTGCGTCGCCGAGTTCCCACCAGTAAACGC
CACGTAATGTTCTCTTTCTCCCTGTACACAGCAGTCACATAATGTGCACG
AAGTGGCTACCCTGCTCAAGATGTTCTTCCGTGAGCTGCCGGATCCAGTG
GTGCCCACAAGTCACTACCACAGCATGCTGGACGCTAGCTCAAGGAGTCT
GCAAGAATTCGTAGATACCGCGAAGCGCTGCGTCGCCGAGTTCCCACCAG
TAAACGCCACGTAA
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