mRNA_H-paniculata_contig4481.11293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4481.11293.1
Unique NamemRNA_H-paniculata_contig4481.11293.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: D8LJR5_ECTSI (Elongator complex protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJR5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.980e-52
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPCS+VPWT+IDKWHREGSY PYPEDQLFELIL+VK ++HPWIRLNRVIRDIPNQYITGGCSVTN+RQ+L QTL KRGL CRCMRCREVK
Sbjct:  350 KIYPCSIVPWTVIDKWHREGSYNPYPEDQLFELILSVKVRVHPWIRLNRVIRDIPNQYITGGCSVTNMRQILLQTLSKRGLRCRCMRCREVK 441
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A836CEU0_9STRA (Elongator complex protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU0_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.690e-43
Identity = 64/92 (69.57%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPCSVVPWT+I+KWHREG+Y+PY +  L E+++ VK+++HPWIRLNRVIRDIPNQYI+GGC+ TN+RQ+LQQ + KRG  C+CMRCREV+
Sbjct:  347 KIYPCSVVPWTVIEKWHREGTYIPYADSDLLEMLMRVKSRVHPWIRLNRVIRDIPNQYISGGCATTNMRQMLQQRMAKRGEFCKCMRCREVR 438
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A7S3UVY7_HETAK (Elongator complex protein 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY7_HETAK)

HSP 1 Score: 144 bits (362), Expect = 1.110e-39
Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCR 252
            KIYPCSVVPWT+I+KWH EG+Y PY +++LFELI+ VKA++HPWIRLNRVIRDIPN YITGGC  TN+RQ+LQ  ++KRG+ CR
Sbjct:  151 KIYPCSVVPWTVIEKWHNEGTYKPYSDERLFELIMRVKARVHPWIRLNRVIRDIPNTYITGGCQKTNMRQILQDEMKKRGVKCR 234
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A7S0DDD5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DDD5_9EUKA)

HSP 1 Score: 138 bits (347), Expect = 4.540e-38
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC  VPWT+I+KW +EGSYVP+  ++L ++++ VK+++HPWIRLNRVIRDIPN+YI GG  VTNLRQ++  T+  +GL CRC+RCRE K
Sbjct:   56 KIYPCQTVPWTVIEKWFKEGSYVPFKPEELMDVLVTVKSQVHPWIRLNRVIRDIPNEYIMGGNPVTNLRQMVLHTMRSKGLKCRCIRCRECK 147
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A2P4X7Y1_9STRA (Elongator complex protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7Y1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.080e-37
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC + PWT+I KW+ EGSYVPY +D+L EL++ VKA++HPWIRLNRVIRDIP+QYI GG    NLRQV+   +  RG  C+C+RCREVK
Sbjct:   31 KIYPCEITPWTVIKKWYDEGSYVPYADDKLIELLMDVKAQVHPWIRLNRVIRDIPSQYILGGMDEPNLRQVINNKMIARGTPCKCIRCREVK 122
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: F0WNB5_9STRA (Elongator complex protein 3 n=2 Tax=Albugo TaxID=65356 RepID=F0WNB5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 8.060e-37
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC + PWT+I KWH  GSY+PY +  L EL++ VKAK+HPWIRLNRVIRDIP+QYI GG    NLRQVL + +E+RG  C C+RCREVK
Sbjct:  379 KIYPCEITPWTVIKKWHDSGSYIPYSDQDLIELLIEVKAKVHPWIRLNRVIRDIPSQYILGGMDEPNLRQVLTKKMEERGTFCPCIRCREVK 470
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A8J5M9M6_9STRA (Radical_SAM_C domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M9M6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.750e-36
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC + PWT+I KW+ EGSYVPY +D+L EL++ VKA++HPWIRLNRVIRDIP+QYI GG    NLRQV+   + +RG  C+C+RCREVK
Sbjct:  308 KIYPCEITPWTVIKKWYDEGSYVPYSDDKLIELLMDVKAEVHPWIRLNRVIRDIPSQYILGGMDEPNLRQVIGNKMIERGTPCKCIRCREVK 399
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BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A6A3P1H2_9STRA (Elongator complex protein 3 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P1H2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.730e-36
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC + PWT+I KW+ EGSYVPYP+D+L +L++ VKA++HPWIRLNRVIRDIP+QYI GG    NLRQV+   +  RG  C+C+RCREVK
Sbjct:  407 KIYPCEITPWTVIKKWYDEGSYVPYPDDKLIDLLMDVKAEVHPWIRLNRVIRDIPSQYILGGMDEPNLRQVICNKMIARGTPCKCIRCREVK 498
[Close]
BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: W2QYY1_PHYPN (Elongator complex protein 3 n=13 Tax=Phytophthora TaxID=4783 RepID=W2QYY1_PHYPN)

HSP 1 Score: 137 bits (344), Expect = 1.200e-35
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC + PWT+I KW+ EGSYVPY +D+L EL++ VKA++HPWIRLNRVIRDIP+QYI GG    NLRQV+   + +RG  C+C+RCREVK
Sbjct:  403 KIYPCEITPWTVIKKWYDEGSYVPYGDDKLIELLMDVKAEVHPWIRLNRVIRDIPSQYILGGMDEPNLRQVIGNKMIERGTPCKCIRCREVK 494
[Close]
BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Match: A0A225WDX9_9STRA (Elongator complex protein 3 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDX9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.200e-35
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRVIRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK 276
            KIYPC + PWT+I KW+ EGSYVPY ED+L EL++ VK ++HPWIRLNRVIRDIP+QYI GG    NLRQV+   +  RG  C+C+RCREVK
Sbjct:  401 KIYPCEITPWTVIKKWYDEGSYVPYAEDKLIELLMDVKTQVHPWIRLNRVIRDIPSQYILGGMDEPNLRQVINNKMIARGTPCKCIRCREVK 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4481.11293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR5_ECTSI3.980e-5286.96Elongator complex protein 3 n=2 Tax=Ectocarpus Tax... [more]
A0A836CEU0_9STRA2.690e-4369.57Elongator complex protein 3 n=1 Tax=Tribonema minu... [more]
A0A7S3UVY7_HETAK1.110e-3971.43Elongator complex protein 3 (Fragment) n=1 Tax=Het... [more]
A0A7S0DDD5_9EUKA4.540e-3861.96Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A2P4X7Y1_9STRA1.080e-3764.13Elongator complex protein n=1 Tax=Phytophthora pal... [more]
F0WNB5_9STRA8.060e-3765.22Elongator complex protein 3 n=2 Tax=Albugo TaxID=6... [more]
A0A8J5M9M6_9STRA1.750e-3664.13Radical_SAM_C domain-containing protein n=1 Tax=Ph... [more]
A0A6A3P1H2_9STRA4.730e-3664.13Elongator complex protein 3 n=9 Tax=Phytophthora T... [more]
W2QYY1_PHYPN1.200e-3564.13Elongator complex protein 3 n=13 Tax=Phytophthora ... [more]
A0A225WDX9_9STRA1.200e-3564.13Elongator complex protein 3 n=1 Tax=Phytophthora m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4481contigH-paniculata_contig4481:14561..15608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D8LJR5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.radical SAM domain protein
EggNOG OGsCOG1243@1,KOG2535@2759
Ec32 ortholog descriptionELP3-like GNAT family acetyltransferase
Ec32 orthologEc-12_002990.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930347.2769997-CDS-H-paniculata_contig4481:14560..146261622930347.2769997-CDS-H-paniculata_contig4481:14560..14626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4481 14561..14626 -
1691481251.5970685-CDS-H-paniculata_contig4481:14560..146261691481251.5970685-CDS-H-paniculata_contig4481:14560..14626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4481 14561..14626 -
1622930347.292837-CDS-H-paniculata_contig4481:15398..156081622930347.292837-CDS-H-paniculata_contig4481:15398..15608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4481 15399..15608 -
1691481251.6077423-CDS-H-paniculata_contig4481:15398..156081691481251.6077423-CDS-H-paniculata_contig4481:15398..15608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4481 15399..15608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4481.11293.1prot_H-paniculata_contig4481.11293.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4481 14561..15608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4481.11293.1

>prot_H-paniculata_contig4481.11293.1 ID=prot_H-paniculata_contig4481.11293.1|Name=mRNA_H-paniculata_contig4481.11293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
KIYPCSVVPWTIIDKWHREGSYVPYPEDQLFELILAVKAKMHPWIRLNRV
IRDIPNQYITGGCSVTNLRQVLQQTLEKRGLVCRCMRCREVK
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mRNA from alignment at H-paniculata_contig4481:14561..15608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4481.11293.1 ID=mRNA_H-paniculata_contig4481.11293.1|Name=mRNA_H-paniculata_contig4481.11293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-paniculata_contig4481:14561..15608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATCTACCCGTGCAGCGTTGTACCTTGGACGATCATCGACAAGTGGCA
CCGCGAGGGATCGTACGTGCCATACCCGGAAGATCAGCTGTTTGAGCTTA
TCCTGGCGGTGAAGGCAAAGATGCATCCGTGGATCCGCCTGAACCGGGTT
ATCCGTGATATCCCGAACCAGTACATCACCGGCGGGTGCTCTGTGACCAA
CTTGCGCCAGGTCTGTATCTTGTTCGATATTCAGTTGAGAAATATGTTCT
AATGTTCTTCGTTTTTTCATTATTCAAATCGCTCGTTAAAATCACGTGAA
ATAGATCAGATGAGGTATATCGGCCCGTTTTTGGACTGAAACTGGTACAA
GTACGATGCTGTCGTGACATGATAAAGTAACATTGACTTTACTTAAGAGT
TGCATGTGCACCATTGCTAAAGTAAGAACAGTAGGTTCAAACTAACTCTC
GAGAGCATCAGGTATTGCAATTAATACGCCCTCACCATCATAGTGTTTGG
CAAGAAGTTGCACATTGCAAAAAGAAGCAGTCCCCAGCCTAGAAGCTTGA
TTATGGACGTGGCAGACTGTTTTGGAACAACCGAAATCTGCCAATGAACA
TCGAGTATTGTTACTTTAAAATTCCTTTGACTAGCCATAAACTGCTCCAT
TCGTAACAGGAAGTGTACGTGTGTTGTATTCCAGCGCCGGGTTGTACTCC
AGCATATACGACAATCACTCTGATGTCGGGTGCTATGAAGCACGATTGGC
AAGCGAGTCCTGTGCTCTCTCTCGAGGGACTGTTTTCGTGGGATACAGTC
GATTAAACCTGCCTTGGTTGGCTCGTGAAGCAATATTCGACGCCTCTCTC
CCGCGTGTCTGCTTGATTGACACGTGACTGGAGAAAACCGTTACTTGAGC
GCCCCTCCCTCCCCCTCTTGCGAACATGTCGAATTGTGATACACAAAACA
ATACGCGGCTGTATATTATTGATGGAGTATAGGTTTTGCAACAGACGCTG
GAGAAACGGGGGTTGGTGTGTCGCTGCATGCGGTGTCGCGAGGTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4481:14561..15608-

>mRNA_H-paniculata_contig4481.11293.1 ID=mRNA_H-paniculata_contig4481.11293.1|Name=mRNA_H-paniculata_contig4481.11293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig4481:14561..15608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATCTACCCGTGCAGCGTTGTACCTTGGACGATCATCGACAAGTGGCA
CCGCGAGGGATCGTACGTGCCATACCCGGAAGATCAGCTGTTTGAGCTTA
TCCTGGCGGTGAAGGCAAAGATGCATCCGTGGATCCGCCTGAACCGGGTT
ATCCGTGATATCCCGAACCAGTACATCACCGGCGGGTGCTCTGTGACCAA
CTTGCGCCAGAAGATCTACCCGTGCAGCGTTGTACCTTGGACGATCATCG
ACAAGTGGCACCGCGAGGGATCGTACGTGCCATACCCGGAAGATCAGCTG
TTTGAGCTTATCCTGGCGGTGAAGGCAAAGATGCATCCGTGGATCCGCCT
GAACCGGGTTATCCGTGATATCCCGAACCAGTACATCACCGGCGGGTGCT
CTGTGACCAACTTGCGCCAGGTTTTGCAACAGACGCTGGAGAAACGGGGG
TTGGTGTGTCGCTGCATGCGGTGTCGCGAGGTGAAGGTTTTGCAACAGAC
GCTGGAGAAACGGGGGTTGGTGTGTCGCTGCATGCGGTGTCGCGAGGTGA
AG
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