mRNA_H-paniculata_contig44803.11292.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44803.11292.1
Unique NamemRNA_H-paniculata_contig44803.11292.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5KJN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.420e-20
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            + + E+ + D+IN  R+  RG   RE++NKLL+LK +A GG+ ++    +   F  N + WY RFRKRN FSIRR TS  Q+LP+GY+  +WA+V+KLR
Sbjct:   97 TVDAEQVLVDYINEQRKQHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVNFNPWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLR 195
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BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5KFQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.280e-19
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:   55 GGRTTGSAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            GG+ +     E+ + D+IN  R+  RG   RE++NKLLQLK +A GG+ ++    +   F    + WY +FRKRN FSIRR TS  Q+LP+GY+  +WA+V+ LR
Sbjct:  154 GGKASTVDAAEQALVDYINEQRKQHRGCGNREVINKLLQLKPDALGGMPANAKPEEALAFKIKFNSWYQQFRKRNGFSIRRRTSVGQKLPKGYEGTAWATVMNLR 258
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.710e-19
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            + + E+ + D+IN  R+L RG   RE++NKLL+LK +A GG+ ++    +   F    + WY RFRKRN FSIRR  S  Q+LP+GY+  +WA+V KLR
Sbjct:  128 TVDAEQALVDYINEQRKLHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLR 226
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.980e-19
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            + + E+ + D++N  R+  R    RE++NKLL+LK +A GG+S++    +   F    + WY RFRKRN FSIRR TS  Q+LP+GY+  +WA+V+KLR
Sbjct:  156 TVDAEQALVDYMNEQRKQHRDCGNREVMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLR 254
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5JYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.440e-18
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKL 366
            + + E+ + D+IN  R+  RG   RE++NKLL+LK +A GG+ ++    +   F    + WY RF KRN FSIRR  S  Q+LP+GY+  +WA+V+KL
Sbjct:   81 TVDAEQALVDYINKQRKQHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFGKRNGFSIRRRNSVGQKLPKGYEGMAWATVMKL 178
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5K4S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.100e-18
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            +A++EE + ++IN  R+   G     ++NKLL+LK +A GGL++     +   F S    WY RFRKRN+FSIRR TS  Q+LP+G++  +WA+++KLR
Sbjct:  116 TADIEEALVEFINDQRKHHVGCGSMAVMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHESMAWATLMKLR 214
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5KI61_9PHAE (BrkDBD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI61_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.820e-18
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            + + E+ + D IN  R+  RG   RE++NKLL+LK +A GG++++    +   F    + WY RFRKRN FSIRR  S  ++LP GY   +WA+V+KLR
Sbjct:  182 TVDAEQSLVDHINEQRKQHRGCGNREVMNKLLELKPDALGGMAANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRVSVGEKLPNGYKGMAWATVMKLR 280
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5L819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L819_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.510e-18
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   79 EVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            + E+ + D+IN   +  RG   RE++NKLL+LK +A GG+ ++    +   F    + WY RFRKRN F IRR TS  Q+LP+GY+  +WA+V+KLR
Sbjct:  127 DAEQALVDYINERHKQHRGCGNREVMNKLLELKPDALGGVPANAKPEEALAFKVKFNSWYQRFRKRNGFRIRRRTSVGQKLPKGYEGMAWATVMKLR 223
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.130e-17
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   76 AEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            A++EE + ++IN  R+   G     ++NKLL+LK +A GGL++     +   F S    WY RFRKRN+FSIRR TS  Q+LP+G++  +WA+++KLR
Sbjct:  124 ADIEEALVEFINDQRKHHVGCGSMAVMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLR 221
[Close]
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Match: A0A6H5JXB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-17
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:   73 SAEVEEEMCDWINHNRQLSRGVSGREILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRCTSFRQRLPQGYDRKSWASVLKLR 369
            + + ++ + ++IN   +  RG   RE++NKLL+LK +A GG+ ++    +   F    + W  RFRKRN FSIRR TS RQ+LP+GY+   WA+V+KLR
Sbjct:   94 TVDADQALVEYINEQHKQHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWCQRFRKRNGFSIRRRTSVRQKLPKGYESMPWATVMKLR 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44803.11292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN9_9PHAE3.420e-2046.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ9_9PHAE2.280e-1943.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE2.710e-1945.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE6.980e-1944.44DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JYC3_9PHAE1.440e-1842.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S0_9PHAE2.100e-1843.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI61_9PHAE2.820e-1843.43BrkDBD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L819_9PHAE3.510e-1844.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYG9_9PHAE1.130e-1743.88DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JXB6_9PHAE1.170e-1742.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44803contigH-paniculata_contig44803:206..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930347.2037215-CDS-H-paniculata_contig44803:205..5891622930347.2037215-CDS-H-paniculata_contig44803:205..589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44803 206..589 -
1691481251.5849037-CDS-H-paniculata_contig44803:205..5891691481251.5849037-CDS-H-paniculata_contig44803:205..589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44803 206..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44803.11292.1prot_H-paniculata_contig44803.11292.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44803 206..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44803.11292.1

>prot_H-paniculata_contig44803.11292.1 ID=prot_H-paniculata_contig44803.11292.1|Name=mRNA_H-paniculata_contig44803.11292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MKAQLKSAKGEGNLRGNNGGRTTGSAEVEEEMCDWINHNRQLSRGVSGRE
ILNKLLQLKRNAFGGLSSSDLAAKFEQFNSNLDKWYARFRKRNRFSIRRC
TSFRQRLPQGYDRKSWASVLKLRAINKK
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mRNA from alignment at H-paniculata_contig44803:206..589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44803.11292.1 ID=mRNA_H-paniculata_contig44803.11292.1|Name=mRNA_H-paniculata_contig44803.11292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig44803:206..589- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCGCAACTGAAGAGCGCTAAAGGCGAAGGCAACCTTCGGGGCAA
TAACGGAGGACGTACGACCGGCAGCGCTGAGGTGGAGGAGGAAATGTGCG
ACTGGATCAACCACAATCGTCAATTGTCCCGCGGCGTCAGTGGGCGGGAG
ATCTTGAACAAGCTCTTACAGCTTAAGCGCAACGCCTTCGGTGGGCTGTC
GAGTAGTGATCTTGCTGCCAAGTTCGAACAGTTCAACAGCAACCTTGACA
AATGGTATGCGCGGTTTCGCAAGAGGAACAGGTTTTCCATCCGTCGCTGC
ACCAGCTTCCGCCAAAGGCTCCCGCAGGGTTATGATAGAAAGTCTTGGGC
GTCGGTGCTGAAACTTCGCGCCATCAACAAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig44803:206..589-

>mRNA_H-paniculata_contig44803.11292.1 ID=mRNA_H-paniculata_contig44803.11292.1|Name=mRNA_H-paniculata_contig44803.11292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig44803:206..589- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCGCAACTGAAGAGCGCTAAAGGCGAAGGCAACCTTCGGGGCAA
TAACGGAGGACGTACGACCGGCAGCGCTGAGGTGGAGGAGGAAATGTGCG
ACTGGATCAACCACAATCGTCAATTGTCCCGCGGCGTCAGTGGGCGGGAG
ATCTTGAACAAGCTCTTACAGCTTAAGCGCAACGCCTTCGGTGGGCTGTC
GAGTAGTGATCTTGCTGCCAAGTTCGAACAGTTCAACAGCAACCTTGACA
AATGGTATGCGCGGTTTCGCAAGAGGAACAGGTTTTCCATCCGTCGCTGC
ACCAGCTTCCGCCAAAGGCTCCCGCAGGGTTATGATAGAAAGTCTTGGGC
GTCGGTGCTGAAACTTCGCGCCATCAACAAGAAGATGAAGGCGCAACTGA
AGAGCGCTAAAGGCGAAGGCAACCTTCGGGGCAATAACGGAGGACGTACG
ACCGGCAGCGCTGAGGTGGAGGAGGAAATGTGCGACTGGATCAACCACAA
TCGTCAATTGTCCCGCGGCGTCAGTGGGCGGGAGATCTTGAACAAGCTCT
TACAGCTTAAGCGCAACGCCTTCGGTGGGCTGTCGAGTAGTGATCTTGCT
GCCAAGTTCGAACAGTTCAACAGCAACCTTGACAAATGGTATGCGCGGTT
TCGCAAGAGGAACAGGTTTTCCATCCGTCGCTGCACCAGCTTCCGCCAAA
GGCTCCCGCAGGGTTATGATAGAAAGTCTTGGGCGTCGGTGCTGAAACTT
CGCGCCATCAACAAGAAG
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