mRNA_H-paniculata_contig44789.11289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44789.11289.1
Unique NamemRNA_H-paniculata_contig44789.11289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44789.11289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44789contigH-paniculata_contig44789:386..866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size191
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44789.11289.1prot_H-paniculata_contig44789.11289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44789 386..842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930346.5470774-CDS-H-paniculata_contig44789:385..4831622930346.5470774-CDS-H-paniculata_contig44789:385..483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44789 386..483 -
1691481251.224091-CDS-H-paniculata_contig44789:385..4831691481251.224091-CDS-H-paniculata_contig44789:385..483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44789 386..483 -
1622930346.5613194-CDS-H-paniculata_contig44789:775..8421622930346.5613194-CDS-H-paniculata_contig44789:775..842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44789 776..842 -
1691481251.2347739-CDS-H-paniculata_contig44789:775..8421691481251.2347739-CDS-H-paniculata_contig44789:775..842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44789 776..842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930346.5733259-UTR-H-paniculata_contig44789:842..8661622930346.5733259-UTR-H-paniculata_contig44789:842..866Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44789 843..866 -
1691481251.243579-UTR-H-paniculata_contig44789:842..8661691481251.243579-UTR-H-paniculata_contig44789:842..866Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44789 843..866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44789.11289.1

>prot_H-paniculata_contig44789.11289.1 ID=prot_H-paniculata_contig44789.11289.1|Name=mRNA_H-paniculata_contig44789.11289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MGYRCLAVCICKWITAAVRTRTDTFPCSVPVSNICKEISQELAKAQESIN
DDGED
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mRNA from alignment at H-paniculata_contig44789:386..866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44789.11289.1 ID=mRNA_H-paniculata_contig44789.11289.1|Name=mRNA_H-paniculata_contig44789.11289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=481bp|location=Sequence derived from alignment at H-paniculata_contig44789:386..866- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATCTCTTGAAGCGGCAAGCCAATGGGGTACCGCTGCCTCGCCGTCTG
TATCTGCAAATGGATAACTGCGGCCGTGAGAACAAGAACAGGTGGGGCTC
ACCAGTGTGTAGGATGTGCTTTCTAAAGGTACAGTTGTTGTATTGGTCCA
GACCAGGAAGTTCTCAGTGGTTGCTTTGGTGAGTATCATGGAAACAAAAG
GCGGCCGTCAACCAACGTAGTAGTAGGGTTCTGGCGAAGATCACTGTTCA
CGATTTATTTGTGCTTCTGTCTCTACCAACACTTGGTTGTAGGTTAATAC
CAAGGCTGATGATACGCTTGTGACGCAAGGAAAGACTTGCACGAAACTCA
CGAGAAGTCTCTCAACTATCATGCTGGGGGCAGATACTTTTCCATGCAGC
GTCCCGGTCTCCAATATCTGTAAAGAAATCTCACAGGAGCTAGCAAAGGC
ACAAGAGAGCATCAACGATGATGGCGAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig44789:386..866-

>mRNA_H-paniculata_contig44789.11289.1 ID=mRNA_H-paniculata_contig44789.11289.1|Name=mRNA_H-paniculata_contig44789.11289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig44789:386..866- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTACCGCTGCCTCGCCGTCTGTATCTGCAAATGGATAACTGCGGC
CGTGAGAACAAGAACAGATGGGGTACCGCTGCCTCGCCGTCTGTATCTGC
AAATGGATAACTGCGGCCGTGAGAACAAGAACAGATACTTTTCCATGCAG
CGTCCCGGTCTCCAATATCTGTAAAGAAATCTCACAGGAGCTAGCAAAGG
CACAAGAGAGCATCAACGATGATGGCGAGGATATACTTTTCCATGCAGCG
TCCCGGTCTCCAATATCTGTAAAGAAATCTCACAGGAGCTAGCAAAGGCA
CAAGAGAGCATCAACGATGATGGCGAGGAT
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