prot_H-paniculata_contig44774.11286.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig44774.11286.1
Unique Name	prot_H-paniculata_contig44774.11286.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	92

Homology

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BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.230e-9
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0

Query:    2 NYGGEFDGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            N G  F GDF    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++++PYE
Sbjct:  163 NGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 258

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.390e-9
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++++PYE
Sbjct:  384 GGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 478

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.590e-9
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++++PYE
Sbjct:   50 GGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 144

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.660e-9
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++++PYE
Sbjct:  317 GGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 411

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.160e-9
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++ +PYE
Sbjct:  400 GGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYE 494

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.230e-8
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  +++ PYE
Sbjct:  262 GGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYE 356

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.700e-8
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++ +PYE
Sbjct:  796 GGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYE 890

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.700e-8
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0

Query:    4 GGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            GGEF  G+F    +E  I  E T   +PQY GVAER LGL+ +  +A  +Q +   G      ++KLWAEAM++AC+  N +  S+  ++ +PYE
Sbjct:  503 GGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYE 597

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: B1PJ47_PHATR (Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B1PJ47_PHATR)

HSP 1 Score: 60.1 bits (144), Expect = 1.710e-8
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0

Query:   16 DEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIALMQ--DQTEGGSEKLWAEAMNYACDIANMS 77
            D+ G+  ELT PDTPQ  GV ERR+ +L+Q+  A+M   D T      LWAEA+N A D+ N+S
Sbjct:  709 DKKGMTLELTAPDTPQQNGVVERRIAVLQQRANAMMMAADLTPEARALLWAEALNTANDLENIS 772

[Close]

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.280e-8
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0

Query:    2 NYGGEFDGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYE 90
            N GG F G+F    +E  I  E T   +P++ GVAER LGL  +  +A  +Q +   G      +++LWAEAM++AC+  N +  S+  ++ +PYE
Sbjct:  196 NGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYE 291

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVR5_9PHAE	2.230e-9	39.58	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	6.390e-9	40.00	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KKK1_9PHAE	6.590e-9	40.00	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	6.660e-9	40.00	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JB16_9PHAE	9.160e-9	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3Y0_9PHAE	1.230e-8	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	1.700e-8	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	1.700e-8	40.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
B1PJ47_PHATR	1.710e-8	48.44	Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornu...	[more]
A0A6H5J594_9PHAE	4.280e-8	36.46	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..91 e-value: 1.2E-5 score: 26.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..91 score: 11.923
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig44774	contig	H-paniculata_contig44774:345..620 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig44774.11286.1	mRNA_H-paniculata_contig44774.11286.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig44774 150..749 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig44774.11286.1 ID=prot_H-paniculata_contig44774.11286.1|Name=mRNA_H-paniculata_contig44774.11286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MNYGGEFDGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL
MQDQTEGGSEKLWAEAMNYACDIANMSCISSIEENVTPYEK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf