mRNA_H-paniculata_contig44774.11286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.380e-25 Identity = 72/210 (34.29%), Postives = 113/210 (53.81%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLK--IGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++ DLGG + S+GG Y I+ DD +R + F++ KSDA +A ++++A + G+ + +R + GG+F GDF +E I E T +PQY GVAER LGL+ + +A +Q + G ++KLWAEAM++AC+ N + S+ ++++PYE YG P PF Y R K+ P GE C + S +
Sbjct: 95 VFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFSKPAYCRW-QRPSKLLPKGESCFYVGPSRD 301
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR) HSP 1 Score: 112 bits (280), Expect = 3.550e-25 Identity = 72/197 (36.55%), Postives = 106/197 (53.81%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLKIGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIALMQDQTEGGSEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPC-GEKCIML 585
++ DL GPMQV SLGGSSY ++ DD SR V F+ +KS+A + + A+ G KI +R + GGEF DF +E G+ LT P TP+ GVAER+ +++ +++ +G SE W EA+ A I N S ++E TPYE G + H + FG+VGY K ++ + EKC+ +
Sbjct: 591 VHADLCGPMQVKSLGGSSYFFLLTDDYSRMSWVFFLSQKSEAFDKFKVFKARVEMESGKKIVNLRTDRGGEFCSKDFTKFCNECGVQRSLTAPYTPEQNGVAERKNRTVKEMMRSMIH--AKGLSEMFWGEAVATAVYILNRSPTKAVEGK-TPYEVWTGRKPSVRHFKIFGSVGYYVKPRSQRRALDSKSEKCVFM 784
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 111 bits (278), Expect = 6.720e-25 Identity = 75/210 (35.71%), Postives = 113/210 (53.81%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLK--IGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++VDLGG V S+GG Y I+ DD +R + F++ KSDA +A +S++A + G+ + +R + GGEF G+F +E I E T +PQY GVAER LGL+ + +A +Q + G ++KLWAEAM++AC+ N + S+ ++ +PYE YG P PF Y K K+ P GE C + S +
Sbjct: 331 VFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLAS-VRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYC-KWQRPSKLFPKGESCFYVGPSRD 537
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 109 bits (273), Expect = 2.200e-24 Identity = 75/211 (35.55%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKY---ITPKGLKIGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++VDLGG + S+GG Y I+ DD +R + F+K +SDA A ++++A I P ++I +R + GGEF G+F +E I E T +PQY GVAER LGL+ + +A +Q + G ++KLWAEAM++AC+ N + S+ ++++PYE YG P PF Y R K+ P GE C + S +
Sbjct: 315 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRW-QRPTKLLPKGESCFYVGPSRD 521
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.160e-24 Identity = 73/210 (34.76%), Postives = 114/210 (54.29%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLK--IGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++VDLGG + S+GG Y I+ DD +R + F++ KSDA +A ++++A + G+ + +R + GGEF G+F +E I E T +PQY GVAER LGL+ + +A +Q + G ++KLWAEAM++AC+ N + S+ ++++PYE YG P PF Y R K+ P GE C + S +
Sbjct: 248 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFLKPAYCRW-QRPTKLLPKGESCFYVGPSRD 454
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 108 bits (271), Expect = 5.680e-24 Identity = 76/210 (36.19%), Postives = 112/210 (53.33%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLK--IGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++VDLGG V S+GG Y I+ DD +R + F+K KSDA A +S++A + G+ + +R + GGEF G+F +E I E T +PQY GVAER LGL+ + +A +Q + G ++KLWAEAM++AC+ N + S+ ++ +PYE YG P PF Y R K+ P GE C + S +
Sbjct: 727 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRW-QRPSKLLPKGESCFYVGPSRD 933
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 108 bits (271), Expect = 5.730e-24 Identity = 76/210 (36.19%), Postives = 112/210 (53.33%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLK--IGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++VDLGG V S+GG Y I+ DD +R + F+K KSDA A +S++A + G+ + +R + GGEF G+F +E I E T +PQY GVAER LGL+ + +A +Q + G ++KLWAEAM++AC+ N + S+ ++ +PYE YG P PF Y R K+ P GE C + S +
Sbjct: 434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY-PFLKPAYCRW-QRPSKLLPKGESCFYVGPSRD 640
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 107 bits (266), Expect = 2.640e-23 Identity = 62/176 (35.23%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLKIGAIRMNYGGEFD-GDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIALMQDQTEGGSEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGY 525
++ D+ GPM TSL GS Y + +DD +R V F+KKKSD A + GL++ +R + G E+ G+F ++ GI H+LT+P TPQ GV+ER+ + + L+ ++ G + WAEA+N + + N+ +++ N TP+E +G T +EHL+ FG V Y
Sbjct: 458 VHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEK--GLPKTFWAEAVNTSVYLLNLLPTKALKGN-TPFEAWHGRTPSVEHLKVFGCVCY 630
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.590e-23 Identity = 73/210 (34.76%), Postives = 113/210 (53.81%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYITPKGLK--IGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQTEGG------SEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIMLSISHN 600
++VDLGG V S+GG Y I+ DD +R + F++ KSDA +A +S++A + G+ I +R + GGEF G+F +E I E T +P++ GVAER LGL+ + +A +Q + G +++LWAEAM++AC+ N + S+ ++ +PYE YG P PF Y K K+ P GE C + S +
Sbjct: 478 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYC-KWQRPSKLLPKGESCFYVGPSRD 684
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.670e-23 Identity = 71/204 (34.80%), Postives = 107/204 (52.45%), Query Frame = 1
Query: 1 LYVDLGGPMQVTSLGGSSYMTIIVDD*SRFWAVKFIKKKSDATAALQSYIAKYIT---PKGLKIGAIRMNYGGEF-DGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIAL-MQDQT----EGGSEKLWAEAMNYACDIANMSCISSIEENVTPYEK*YGNTAPLEHLQPFGTVGYMRKILTEHKMAPCGEKCIML 585
++VDL G +V SLGG Y I+ DD +R+ V F+K KSDA A + Y+A+ P + + +R + GGEF +G+F ++ I E T +P+Y GVAER LGL++ +A +Q T LWAEA+ ++C+ N + +S E +PYE +G+ P PF + K+ HK P +KC L
Sbjct: 736 VFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYL 936 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44774.11286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44774.11286.1 >prot_H-paniculata_contig44774.11286.1 ID=prot_H-paniculata_contig44774.11286.1|Name=mRNA_H-paniculata_contig44774.11286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MNYGGEFDGDFHLKLDEHGIGHELTLPDTPQYKGVAERRLGLLRQKTIALback to top mRNA from alignment at H-paniculata_contig44774:150..749+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44774.11286.1 ID=mRNA_H-paniculata_contig44774.11286.1|Name=mRNA_H-paniculata_contig44774.11286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig44774:150..749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44774:150..749+ >mRNA_H-paniculata_contig44774.11286.1 ID=mRNA_H-paniculata_contig44774.11286.1|Name=mRNA_H-paniculata_contig44774.11286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig44774:150..749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |